LOCUS MBGCG1Z 2646 bp ss-DNA circular VRL 11-MAR-2003 DEFINITION Bean golden yellow mosaic virus-[Puerto Rico] DNA1, complete sequence. ACCESSION M10070 VERSION M10070.1 KEYWORDS . SOURCE Bean golden yellow mosaic virus-[Puerto Rico] ORGANISM Bean golden yellow mosaic virus-[Puerto Rico] Viruses; ssDNA viruses; Geminiviridae; Begomovirus. REFERENCE 1 (bases 1 to 2646) AUTHORS Howarth,A.J., Caton,J., Bossert,M. and Goodman,R.M. TITLE Nucleotide sequence of bean golden mosaic virus and a model for gene regulation in geminiviruses JOURNAL Proc. Natl. Acad. Sci. U.S.A. 82 (11), 3572-3576 (1985) PUBMED 16593562 COMMENT Draft entry and sequence in computer readable form kindly provided by A.J.Howarth (26-SEP-1985). Bean golden mosaic virus consists of two circular ss-DNA molecules, DNA 1 and DNA 2. The sense of the strand below is identical to that of the viral ss-DNA. The 'common regions', positions 1-205, are identical in DNA 1 and DNA 2. There is no sequence homology in the regions flanking these areas. A repeat is located at nucleotides 18-37 and 40-59 and an inverted repeat at 149-184. This inverted repeat may form a stable stem-loop structure with a 12 bp stem and a 12 bp loop. 'at' rich regions are found at positions 220-240 and 320-340. REFERENCE 1 suggests that late genes are expressed in a clockwise and early genes in a counterclockwise direction. Four ORFs (see FEATURES) on DNA 1 compare favorably with the ORFs of tomato golden mosaic virus and cassava latent virus with respect to length, position and partial homology. REFERENCE 1 noted additional ORFs also. FEATURES Location/Qualifiers source 1..2646 /mol_type="genomic DNA" /db_xref="taxon:222448" /segment="DNA1" /organism="Bean golden yellow mosaic virus-[Puerto Rico]" /note="ICTV7 type organism" CDS complement(join(1591..2646,1..6)) /codon_start=1 /protein_id="AAA46318.1" /translation="MPPPQRFRVQSKNYFLTYPRCTIPKEEALSQLQKIHTTTNKKFI KVCEERHDNGEPHLHALIQFEGKFICTNKRLFDLVSTTRSAHFHPNIQGAKSSSDVKE YIDKDGVTIEWGQFQVDGRSARGGQQSANDSYAKALNADSIESALTILKEEQPKDYVL QNHNIRSNLERIFFKVPEPWVPPFPLSSFVNIPVVMQDWVDDYFGRGSAARPERPISI IVEGDSRTGKTMWARALGPHNYLSGHLDFNSLVYSNSVEYNVIDDITPNYLKLKDWKE LIGEQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKDFLNKEEKPALHNWTIHNA IFVTLTAPLYQSTAQDCQT" /product="40.2 kDa protein" repeat_region 1..205 /note="common region repeat" CDS 399..1124 /codon_start=1 /protein_id="AAA46319.1" /translation="MAGTSKVSRSGNYSPSGGMGSKSNKANAWVNRPMYRKPRIYRMY KSPDVPKGCEGPCKVQSYEQRHDISHVGKVMCISDITRGNGITHRVGKRFCVKSVYIL GKIWMDENIMLKNHTNSVIFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDFRDR YQVMHRFNAKVSGGQYASNDQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMAC THASNPVYATLKIRIYVYDSITN" /product="putative coat protein" /note="27.7 kDa protein" CDS complement(1121..1519) /codon_start=1 /protein_id="AAA46320.1" /translation="MDSRTGENITAHQAENSVFIWEVPNPLYFKIMRVEDPAYTRTRI YHIQIRFNHNLRKALDLHKAFLNFQVWTTSIQASGTTYLNRFRLLVLLYLHRLGVIGI NNVIRAVQFATNKSYVNTVLENHDIKYKFY" /product="15.6 kDa protein" CDS complement(1266..1784) /codon_start=1 /protein_id="AAA46321.1" /translation="MESRFKLKEEYHQSCCAIQVRVPVIKTSSTKRKNQLYTTGPFIM RSSSPSQPPSIKAQHRIAKHKAIRRRRIDLNCGCSIFYHIKCADHGFTHRGEHHCASG REFRFYLGGTKSPLFQDHAGGRSSIHTDKDIPHPNQVQSQPQESTGSPQSIPELPSLD DIDSSFWDDIFK" /product="19.6 kDa protein" ORIGIN 1 tggcatattt gtaaatatgc gagtgtctcc aaatgagttt gcgagtgtct ccaattgagg 61 ctcctcaaac tctcgctatg caattggaga ctggagtaca atatatacta gaaccctcaa 121 tctcttgaat tatcacatcc atacacgtgg cggccatccg atataatatt accggatggc 181 cgcccgcgcc cctttatatc cgtactgcta cacgtggtgc tttaatttaa attaaagatg 241 tctatttttg actgaccaat gcttttgcat gtgagaagct tagatatttg tgtaaaactt 301 ggcgactaag ttttaccttc gtttataaat ttaaattaaa tgtatgccca ttccacgtgt 361 aagtccagaa tgcctaagcg tgatgcgccg tggctcatat ggcgggaacc tccaaggttt 421 cccgttctgg caattattct ccaagtggtg gaatgggctc aaaatccaac aaggccaatg 481 catgggtcaa caggcccatg tatagaaagc caaggatata tcggatgtac aaaagcccag 541 atgtgccaaa gggatgtgaa ggaccttgca aggtccaatc atatgaacaa cgccatgata 601 tatctcatgt tggtaaggtt atgtgtatat ccgatatcac acgtggtaat ggtattactc 661 atcgtgttgg taaacgtttt tgtgtgaagt ctgtgtatat tttaggtaag atatggatgg 721 atgaaaacat catgcttaag aaccatacca atagtgtcat tttttggttg gttcgtgacc 781 gtagaccata tggaacccct atggattttg gtcaagtttt taacatgttt gacaatgaac 841 ctagtactgc tacggtcaag aacgattttc gtgatcgtta tcaagttatg cataggttca 901 atgcaaaggt ttctggtggt caatatgcaa gcaacgatca agccttggta aggcgttttt 961 ggaaggtgaa caaccatgtc gtctataacc accaggaagc aggaaaatac gagaatcata 1021 cggagaatgc gttattgttg tatatggcat gtacacatgc ctctaatcct gtatatgcga 1081 cattgaaaat tcggatctat gtctatgatt cgataaccaa ttaataaaat ttatatttta 1141 tatcatgatt ctcaagtaca gtatttacat atgatttgtt tgttgcgaac tgaacagctc 1201 taatgacatt gtttattcct attacgccta acctatgtaa atacaataaa actaagagtc 1261 taaatctatt taaatatgtc gtcccagaag cttgaatcga tgtcgtccag acttggaagt 1321 tcaggaatgc tttgtggaga tccagtgctt tcctgaggtt gtgattgaac ctgatttgga 1381 tgtggtatat ccttgtccgt gtgtatgctg gatcttccac ccgcatgatc ttgaaataaa 1441 ggggatttgg tacctcccaa ataaaaacgg aattctctgc ctgatgcgca gtgatgttct 1501 cccctgtgcg tgaatccatg atctgcgcac ttgatatggt aaaatatgga acagccgcag 1561 ttcaagtcaa tgcgtcgtcg acgaatggct ttatgtttgg caatcctgtg ctgtgctttg 1621 atagaggggg gctgtgaggg tgacgaagat cgcattatga atggtccagt tgtgtaaagc 1681 tggtttttcc tctttgttga ggaagtcttt ataactggaa ccctcacctg gattgcacag 1741 cacgattgat ggtattcctc ctttaatttg aaccggcttt ccatatttac agttggattg 1801 ccagtccttt tgttccccaa ttagctcttt ccagtccttt aacttcaaat aattcggggt 1861 tatgtcatca atgacgttgt attccactga gttcgaatag acaagtgaat taaagtccaa 1921 atgaccgctc aaataattat gtgggcctaa tgcacgagcc cacattgtct ttccagttcg 1981 tgaatcacct tcgacgatga tactaatagg tctttctggc cgcgcagcgg aaccccttcc 2041 gaaatagtcg tcaacccagt cttgcataac aaccggaata ttgacgaatg atgacaacgg 2101 aaatggagga acccatggtt ccggcacttt gaagaagatc cgttcgagat tagaacggat 2161 gttgtgattt tgaaggacgt aatctttcgg ttgttcttcc ttcaatattg tcaaggcaga 2221 ttcaattgaa tctgcgttta atgcctttgc gtatgagtcg ttggcagact gctgacctcc 2281 tcttgcagat ctgccgtcga cttggaattg tccccattcg attgtgactc catctttgtc 2341 gatgtattct ttgacgtcgg aacttgattt agctccctga atgttcggat ggaaatgtgc 2401 tgacctggtt gtggatacca ggtcgaacaa tcttttattt gtgcagatga atttaccttc 2461 gaactgaata agcgcatgaa gatggggttc accattatcg tgacgttcct cacagacctt 2521 gatgaatttc ttattcgtcg ttgtatgaat cttttgaagt tgcgaaagag cttcttcttt 2581 cggtatagtg caacgaggat aagtgaggaa atagtttttg gactgaactc taaatctttg 2641 aggtgg //