LOCUS MBGCG2Z 2587 bp ss-DNA circular VRL 11-MAR-2003 DEFINITION Bean golden yellow mosaic virus-[Puerto Rico] DNA2, complete sequence. ACCESSION M10080 VERSION M10080.1 KEYWORDS . SOURCE Bean golden yellow mosaic virus-[Puerto Rico] ORGANISM Bean golden yellow mosaic virus-[Puerto Rico] Viruses; ssDNA viruses; Geminiviridae; Begomovirus. REFERENCE 1 (bases 1 to 2587) AUTHORS Howarth,A.J., Caton,J., Bossert,M. and Goodman,R.M. TITLE Nucleotide sequence of bean golden mosaic virus and a model for gene regulation in geminiviruses JOURNAL Proc. Natl. Acad. Sci. U.S.A. 82 (11), 3572-3576 (1985) PUBMED 16593562 COMMENT Draft entry and sequence in computer readable form kindly provided by A.J.Howarth (26-SEP-1985). Bean golden mosaic virus consists of two circular ss-DNA molecules, DNA 1 and DNA 2. The sense of the strand below is the same as that of the viral ss-DNA. The 'common regions', positions 1-205, are identical in DNA 1 and DNA 2. There is no sequence homology in the regions flanking these areas. A repeat is located at nucleotides 18-37 and 40-59 and an inverted repeat at 149-184. This inverted repeat may form a stable stem-loop structure with a 12 bp stem and a 12 bp loop. REFERENCE 1 suggests that late genes are expressed in a clockwise and early genes in a counterclockwise direction. Two ORFs (see FEATURES) on DNA 2 compare favorably with the ORFs of tomato golden mosaic virus and cassava latent virus with respect to length, position and partial homology. REFERENCE 1 identified additional ORFs as well. FEATURES Location/Qualifiers source 1..2587 /mol_type="genomic DNA" /db_xref="taxon:222448" /segment="DNA2" /organism="Bean golden yellow mosaic virus-[Puerto Rico]" /note="ICTV7 type organism" repeat_region 1..205 /note="common region repeat" CDS 510..1280 /codon_start=1 /protein_id="AAA46322.1" /translation="MYASKYKRGSSNYQRRGYSRYQGFRRTAIVTRHDGKRRQHQSNK SNEDPKMLVQCIRENQFGPDFVMSHNTAISTFINYPQLGKIEPNRCRSYIKLKRLRFK GTVKIERMHTDVNMDGLSPKIEGVFSIVIVVDRKPHLSPSGCLHTFDELFGARINSHG NLAVMPSLKDRFYIRHLLKRVLSVDKDTTMIDVEGSTLLSNKRYNMWSTFNDFDHDSC NGVYANIAKNALLVYYCWMSDIMSKASTFVSYDLDYVG" /product="putative insect transmission product" /note="29.7 kDa protein" CDS complement(1314..2195) /codon_start=1 /protein_id="AAA46323.1" /translation="MDSQLANPPNAFNYIESQRDEYQLSHDLTEIILQFPSTASQLSA RFSRSCMKIDHCVIEYRQQVPINATGSVVVEIHDKRMTDNESLQASWTFPIRCNIDLH YFSSSFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVK ILSKQFSNKDIDFSHVDYGKWERKLIRSASLSKYGLQGPIELKPGESWASKSTIGVSH LDADSDLDSAIHPYKNLNRLGSSVLDPGDSASIIGAQRAQSNITLSIAQLNEIVRSTV NECINNNCIHVQPKSLK" /product="33.1 kDa protein" ORIGIN 1 tggcatattt gtaaatatgc gagtgtctcc aaatgagttt gcgagtgtct ccaattgagg 61 ctcctcaaac tctcgctatg caattggaga ctggagtaca atatatacta gaaccctcaa 121 tctcttgaat tatcacatcc atacacgtgg cggccatccg atataatatt accggatggc 181 cgcccgcgcc cctttatatc cgtacgccgc atttcgattc cagaaatgcc cttcccacgc 241 tttatacacg gtattctata ccgttggata aagcttattg cactctatca ttgaattttg 301 aattattgtc attgcttttg tgtttcgata tttatggatg ggtctgacac attactgaca 361 ttgtacaatt cgaccaatca aaattcacga tagaagtcta gttaaatcgt ttattaatat 421 gagatcctta taagtaaaca tatttgataa agaaaaaacg atcatcgttt ttaatgtttg 481 tcttgttatt ttaggcaaac gatttaacaa tgtatgcgtc taaatataaa cgtggttcgt 541 ctaactatca acgacgaggt tattcacgtt atcaaggttt tcgacgaacg gcaattgtta 601 cacgacacga tggtaagcgt cgacaacatc aatctaataa gtctaatgaa gatcctaaga 661 tgttagtgca atgtatacgt gaaaatcagt ttggtcctga ttttgttatg tcccataata 721 ctgcaatatc gacgttcatt aattatcctc aacttggtaa gatcgaacct aatcgatgta 781 ggtcatatat caagttgaaa cgcttgcgtt tcaaagggac ggttaagatt gaacgcatgc 841 acactgatgt taacatggat ggattatctc ctaagattga aggcgtattt agtattgtta 901 ttgtggttga tcggaaacca catttaagtc ctagtggatg tctccataca tttgacgaat 961 tgtttggagc aaggataaat agccatggaa acctagctgt gatgccttct ttgaaagata 1021 gattttacat acggcatttg ttgaagcgtg ttttatctgt ggacaaagac acgactatga 1081 tagacgttga gggttctact ttgttgtcta ataagcgtta taatatgtgg tctacattta 1141 atgattttga tcatgactca tgtaatggtg tttatgctaa tattgctaag aacgctttat 1201 tagtctatta ttgctggatg tcagatatta tgtctaaggc atccacattt gtatcatatg 1261 atcttgatta tgttggttga acgtcgatct aacacaagaa taaatatacg tatttatttc 1321 aaagactttg gttgaacatg aatacaattg ttgttgatac attcatttac cgttgatcgc 1381 acaatttcgt ttaattgtgc aattgacagt gttatgtttg attgggctct ctgagccccg 1441 ataattgacg ctgaatctcc cgggtccaaa acactgcttc ccagtctgtt taaattcttg 1501 tatggatgta ttgcgctatc taagtccgag tccgcatcta aatgagatac accgattgta 1561 ctttttgagg cccatgactc acccggcttt aattcgattg ggccttgtag tccatacttt 1621 gataatgatg cggatcgtat caatttcctt tcccacttcc cgtagtcgac atgtgagaag 1681 tcgatgtcct tattggaaaa ctgctttgat aatattttta ctgttggtgc ccggaagggg 1741 atatctaccg aatgtttagc cgttgataat ttcagttttc ccttgaattt tgcgaaatgt 1801 gtcctttgat gaacgttggt gtctgaaact ctgtaataga gtttccatgg tatcgggtct 1861 tttaacgaga aaaatgacga agagaagtag tggagatcta tgttgcatct tatgggaaac 1921 gtccatgatg cttgtaatga ttcattgtct gtcatccttt tgtcgtgaat ctccactaca 1981 accgatcctg tcgcgtttat aggcacctgt tgcctatact caattacaca atgatcgatc 2041 ttcatacaac tgcgactgaa tcgtgctgat agttgagacg ctgtggaagg aaattgaagg 2101 attatctcag ttagatcatg agacaattga tattcgtctc tctgagactc tatgtaatta 2161 aatgcatttg gaggatttgc taactgagaa tccatttaag aataaatggc cgcgcagcgg 2221 aattgctcag agagataagg tccactcaac taatggatag ctaacaaata agaactatat 2281 ttgtgaaaca ctcatacaac tgatatactg acaaggagaa tgtgaaatag attatagtga 2341 gatagagaag cattgttgta acttatatag acagttgtat gcgattaaag ctctttttga 2401 aaaagaacat attatttaag taatgatcat gaaatatata tcttatatat atatattgta 2461 tgaattggac atgattattg ttatactaaa tgtcgtacga tgatcagaag ttaatatgga 2521 ttatattgtt ttttatgaat tatttgaagg ttaataagca aaacgaagcc gttttgaact 2581 tattcgt //