LOCUS NC_027631 6258 bp RNA linear VRL 28-JUL-2015 DEFINITION Bee Macula-like virus isolate France 878V, complete genome. ACCESSION NC_027631 VERSION NC_027631.1 DBSOURCE BioProject accession PRJNA291249 KEYWORDS RefSeq. SOURCE Bee Macula-like virus ORGANISM Bee Macula-like virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales; Tymoviridae; unclassified Tymoviridae. REFERENCE 1 (bases 1 to 6258) AUTHORS de Miranda,J.R., Cornman,R.S., Evans,J.D., Semberg,E., Haddad,N., Neumann,P. and Gauthier,L. TITLE Genome Characterization, Prevalence and Distribution of a Macula-Like Virus from Apis mellifera and Varroa destructor JOURNAL Viruses 7 (7), 3586-3602 (2015) PUBMED 26154017 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 6258) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (28-JUL-2015) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 6258) AUTHORS de Miranda,J.R., Cornman,R.S., Evans,J.D., Semberg,E., Haddad,N., Neumann,P. and Gauthier,L. TITLE Direct Submission JOURNAL Submitted (15-JUN-2015) Ecology, Swedish University of Agricultural Sciences, 16-18 Ullsvag, Uppsala, Uppland 75007, Sweden COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to KT162924. ##Assembly-Data-START## Assembly Method :: VELVET v. 2014; OASES v. 2014 Assembly Name :: BeeMLV Coverage :: >10x Sequencing Technology :: 454; Illumina; Sanger dideoxy sequencing ##Assembly-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..6258 /mol_type="genomic RNA" /country="France" /collected_by="L. Gauthier" /collection_date="01-Oct-2002" /host="Apis mellifera" /db_xref="taxon:1682186" /isolate="France 878V" /organism="Bee Macula-like virus" 5'UTR 1..28 gene 29..5452 /locus_tag="AFL71_gp1" /db_xref="GeneID:25102675" CDS 29..5452 /locus_tag="AFL71_gp1" /db_xref="GeneID:25102675" /codon_start=1 /protein_id="YP_009160324.1" /translation="MSNSSSSAVQALSASIHRDAYLNPVLQHAAPELCSALDRYPYQL ESSLVDKLRAFGIGASHLATKAHPHPYHKTLELFYHHSVLPNLLTQPTTVLFMKPSKF EALARLHPELTELRCQVLTGRDLSRYTSTQAXKINTPMAYLDYALMFYTPAQVASLFL RNPQLHTLYATLIVPAESSFTDYSFEPSIYHFTRSEDGTLLHYYLERSANGHYEQPSS ALDWLSINHITSNDGLDLTVTLHSTHASHHLLIISRQSAKFTDVERAFDTPDAVMLPQ PDDVHLPDAHRLVPRAVYDSLFSYVRSVRTLRESDPSGLIRQHRNKPEFAWVSPAAWD ALIQYAHATYAYRPGLRFTLKETWFSQLRCRXARWLDPRWNLYSGVXYIALAGGAFYY LKYCAKKGSFILPTXQLFXKXPSXCKRYCMPFADILPERPTGXELLPRIWWPVRNCHW LLLDRLHSRLHPAPTXXLWPHFQLXFIPATFQWFSLRTHLLAVSLPPIXHALFRRFGP XHSYQAYTQLAHPKPYQLLIPCHGVHVXPSAFDFVPGLPYHRALSPPTVPEXTXTPLX XTPAPAPKAEVSLXPFINSIMEDSDVXEAACXAXQPRAATEIXXQXZAPXDSXXPTEL GASXSPRPAQXXPPSSPLPQSPPSQPPVPMAMGTEPNRFSLPEFXASAPTGVQAVSAA PFCSPVGPPTSAPXLDAPISPLDSDPSGAPGIAQPFHLIHNYPPSSDIMWPSKRRVLP ASTLPIPANRCLLDAMADVIPHRSASSLWALLCGMLPDCQLDNDEIRTIGLSTEHLSA LAWRLQAHFTVVSDHTATYGNPRAQADRHFTIYHGSNHFSSTPVKRGARTPGXRAVRH SDYAALHKFVTESGHRLPFQKFHKYTTHRDRAKNLISNMKNLHDGVLLSTDATNLHER MLQLDRCIDVSRDRSVSLIHLSGAPGCGKTAPLAZAIXXLGWXHRXRVAVPTTNLRPE WRHHLRLEESQGYRVSTWETALTKTAEILIIDEVYRLPNGYVDLAILSDPNVRLVILL GDPVQAHYHSTHPASTNSLIQPEYKHLAPYRDFYCAYSYRLPRQLSRLLGLGAFGKNE XMLVTXTNHPDVRHRILVLSQHVARALSDMGYHAITWASSQGLDLEGPAVLHIDRNIR LTSENIILVALTRSKTGVIFTGDISHLRQSSGLLHALLTNQPYSYVTAFSEFIGSSNX LYEPLPARFVGATSXPPPLLPRGAKVDHLSTFDVLFQREPLRSERRRQSGPPPHSSSL LPPSRAPLHHAIAPVIPSETSXTASGIESPPITTVIPGECFETLASSFMPAHDPSSRE RLFRGELTRQFPYLNREFTLGXQPLSLLAPIHSPSQDPTLLPSSIDKRLRFRHSHVPY EITANDEFLGQQLFQAWSXLQRLPDSVPFDPHLFAECINLNEYAQLTNKTKNVIANNA DRSDPDWRYTWVRIFAKAQHKVNAASIFTDYKACQTLALMHDYVILTLGPVKKYQRVI HARYRPGNIYIHAAHSPQGLSEYCQRHLKSQLALTNDYTAFDQSQHGEAVVFEREKMA QLGIPQQLIDLHVFLKTNVETQFGPLTCMRLTGEPGTYDDNTDYNLAILSLRYLLTHQ HVVFVSGDDSAIFPPPSDNPRWKVIEPLIALRFKIQIDRYPLFCGYYLGPAGACRDPL ALFAKFAIAYDANELELKMPSYIAEFSIGHLLGDAVSSLLPPSHILFXSAVFDLICRR ATVDQKTILNIHTAPEHRLLRFLQRARYFTYTAARILQAALGXTPIVNASGDLPLEPT VEGELLLPGHDGTPARGARSXAH" /product="polyprotein" /note="non-structural proteins" gene 5400..6258 /locus_tag="AFL71_gs1" /db_xref="GeneID:25102673" misc_RNA 5400..6258 /locus_tag="AFL71_gs1" /db_xref="GeneID:25102673" /note="sub-genomic RNA" gene 5412..6089 /locus_tag="AFL71_gp3" /db_xref="GeneID:25102672" CDS 5412..6089 /locus_tag="AFL71_gp3" /db_xref="GeneID:25102672" /codon_start=1 /protein_id="YP_009160325.1" /translation="MELLLEALAPLLTKTASSLTAPSPTPSTEPSANTELKPAAPQSN AIVASTARIPATPSLVATPLSRDPSLKIPFQFALGRVSSADDKGIDYVFSSIPQFTKL VAPYRRARLCSLEAVLEPLAPLSNGYSIILCWTQANNVVVGADSLAVPGAQLFSATKY AVLTQSQVLPAPLHALNPMVKDSVTYTDSPRLHIAPFKLDDPGAALLVLRGVLEVSSP ALVANTT" /product="coat protein" gene 5788..6198 /locus_tag="AFL71_gp2" /db_xref="GeneID:25102674" CDS 5788..6198 /locus_tag="AFL71_gp2" /db_xref="GeneID:25102674" /codon_start=1 /protein_id="YP_009160326.1" /translation="MATPSSSAGLRLTTSLLALXLLLSPAPSSSQRPSTPXSPSPKFS QLLSTPLTQWSRIPLPIPTLQDCTSPPSNWTTREXPCSFSEASLKSLLRLLLPILHDH GYIPKSCRTCFNYWGLPPIPNLNTLTFPDATGNV" /product="P15" 3'UTR 6199..6244 /locus_tag="AFL71_gs1" ORIGIN 1 accttgttca atactcaacc agaacagcat gtccaactct tcttcgtctg ctgtccaggc 61 gctcagcgcc agcatccacc gcgatgctta tctcaaccca gtgctgcaac atgcagctcc 121 tgagctctgc tccgctctcg atcgttaccc ctatcaacta gagtctagcc tggttgataa 181 attacgcgcc ttcggtatag gcgcttctca ccttgccacc aaagctcatc cccaccccta 241 tcacaaaacc ctcgaactct tctatcatca ctcggttctc ccgaacctcc tcacccagcc 301 cacaacagtt ctcttcatga aaccctccaa gttcgaggct ctagcccgcc tccacccgga 361 gctcactgag ctgcgctgcc aagttctcac cggtcgggac ctctcccgct acacctcrac 421 tcaggccatr aagatcaaca caccyatggc ctatctcgac tacgccctya tgttctacac 481 gcccgctcaa gtggcctcac tctttctgag gaatccacaa ctccacaccc tctatgccac 541 rcttatagtc ccggcggagt cctctttcac agactaytcc tttgagcctt ccatctatca 601 tttcacccgc tccgaagayg gcaccctcct ccattactay ytggaacgct ccgctaacgg 661 rcactatgaa caaccctcct ccgccctaga ttggctttcc attaaccaca tyacttcgaa 721 tgacggctta gacctcacag tcactctaca ctccacacac gcgtcccacc acctcctcat 781 aatctcacga caatcggcwa aattyacaga tgtggaacgc gcyttcgaca cgcccgacgc 841 ggtcatgctg cctcagcctg atgacgtcca cctcccggac gcccaccgcc tggttccccg 901 agcggtgtat gattccctct tctcctatgt ccgctcagtg cgcacattgc gcgagtcgga 961 cccctccgga ctcattcggc aacaccgtaa yaaacctgag ttcgcctggg tctcacctgc 1021 cgcatgggac gcgctcattc aatacgcaca cgcaacctac gcctaccgcc ccggactacg 1081 gttcactctc aaggagactt ggttctccca gctccgytgc cgcytcgccc gmtggctcga 1141 cccycgctgg aacctctayt ctggcgtcrc ytacatcgcc ttagccggag gagcyttcta 1201 ttacctcaaa tactgcgcaa agaagggctc attcatcctt ccaactrttc agctcttcma 1261 aaaawtcccy tcgrcatgca aacgctattg catgcccttc gcagatattc tccccgaacg 1321 gcccactggc yccgaactrc tccctcgaat ytggtggccg gtgcgaaatt gccactggyt 1381 gctcctcgat cgcctgcact cgcggcttca ccccgcaccc accdacskac tytggccaca 1441 tttccagctg crgttcatcc crgccacctt ccagtggttc tcyctccgca cgcacctact 1501 cgctgtctcc cttcctccca tcytccacgc ccttttccgc cgtttcggcc ccrctcacag 1561 ttaccaggcg tacactcagc ttgcccaccc taaaccttat caattgctca taccttgcca 1621 tggcgtgcac gtggytccca gtgccttyga tttcgtgcca gggcttccat accatcgcgc 1681 actctctcct cccaccgtcc ctgaggasac ckcyacacct ctccycttsa ctccagcccc 1741 ggccccaaaa gccgaggttt cycttycccc cttcataaac tcyatcatgg aggactccga 1801 cgtcyccgag gcggcctgcr ctgcwgrgca accccgggca gctacggaga tcycaycyca 1861 agytsargcg ccryyggact cgcycyctcc aactgagcts ggagcttcgr tytcaccgmg 1921 gccggctcag cytyttccac cctcttcacc gytaccacag agtcccccat cccagccccc 1981 agttccaatg gccatgggaa ccgaacccaa ccgcttctct ctcccagaat ttrtcgcttc 2041 cgctcccact ggagtccagg ccgtatctgc cgcgcctttc tgctctcccg ttgggcctcc 2101 tacgagcgcc cctgycctcg acgccccaat ctccccactt gattcggatc ccagtggcgc 2161 tccaggyatc gcacagccct tccacctcat ycacaactat cccccaagct cagacatcat 2221 gtggccttcc aaaaggagag tgctccccgc ctccaccctc ccaatacctg ccaacagatg 2281 cctgttggac gcwatggctg acgtcattcc acatcgttcg gcttcttcgc tbtgggccct 2341 gctbtgcgga atgctgcccg actgccagct tgayaacgac gagatccgca cgatcgggct 2401 tagcaccgag catctytccg cacttgcctg gcgcctccag gcccacttca cggtagtttc 2461 agaccacact gccacgtatg ggaaycctcg cgcccaggcy gaccgacatt tyaccatcta 2521 tcatggctcc aatcacttyt cctccacgcc cgtcaaaaga ggcgctcgya crccgggycy 2581 tcgtgcggtt cgccactcag actacgccgc gctccacaag ttcgtcaccg agagcggtca 2641 ccgtctyccc ttccaaaaat ttcacaagta caccacccac agggaccgcg cgaagaacct 2701 yatttccaac atgaagaacc tccatgatgg cgtgcttctc tcgacygacg ccaccaatct 2761 tcacgagcgc atgcttcagc tcgatcgctg cattgacgty agccgagatc gttctgtytc 2821 ccttatccac ctttcaggcg ccccyggttg cggraaaacc gcrcctctcg ccsaggcyat 2881 yygcwcyctc gggtggcrac accgcgytcg cgtggcygtc cckaccacca acctacgacc 2941 agartggcga catcacctcc gtcttgaaga gagccaaggc taccgygttt caacttggga 3001 aaccgcrctc accaagactg cmgagatcct catyatagac gaggtctacc gcctcccgaa 3061 tggctatgtg gacctcgcca ttctttctga ccccaatgtg cgyctcgtca tactcctggg 3121 cgayccrgtt caggcccayt aycattcyac tcaccccgct tccacraact ccctmatcca 3181 gccygagtac aagcatctyg ckccctaccg agatttttay tgcgcctact crtaycgctt 3241 gccccgacag ctcagccgcy tactgggcct aggcgctttc ggcaaaaacg agarsatgct 3301 cgtcacgrcy acaaatcatc cggaygtgcg acaycgcatt cttgtgctca gycagcacgt 3361 cgcacgcgcr ctsagtgaca tgggttatca cgccatyacc tgggcctctt cccaggggct 3421 tgacttggar ggaccagcgg tycttcacat cgaccgcaac atccgcctca cytccgagaa 3481 catyattctc gttgctctca cccgctcaaa aactggygtc attttcacag gcgatatatc 3541 tcatcttcgc caatccagcg grctcytgca ygccctcctt accaatcagc cctattccta 3601 cgtyacagct ttctccgaat tyattggytc rtccaacrtt ctctacgagc cactaccggc 3661 mcgcttcgta ggygccacct ccarcccgcc gccccttctc cctcgaggag ccaaggtyga 3721 ccatctctcg accttcgatg tcttgttcca gcgagagcct ctcaggagcg agcggcggcg 3781 acaatccgga ccccctccac attcctcttc acttctcccy ccatctcgcg cccccctgca 3841 tcatgccaty gccccggtta tcccgagtga gacctcayyc acggcgtcag gcatcgaatc 3901 cccccccata actacrgtca ttcccggaga gtgcttcgag actctcgctt ccagtttcat 3961 gcccgcccac gaccccagca gtcgtgagcg cctcttycgc ggggagctca cacgccaatt 4021 cccctatctc aaccgagart tcacgctcgg cscccagccc ctttctctsc tcgcaccaat 4081 ccacagcccy tcccaggacc caacattact gccctcrtcc atcgacaaac ggctgcgttt 4141 tcgtcactcc catgttccyt acgagattac cgccaatgat gagttyctcg ggcagcagct 4201 cttccaggcy tggtccrgac ttcagaggct tcccgattca gtvcccttcg atccycacct 4261 tttygccgaa tgcatcaatc tcaacgarta cgcccagctt accaacaaaa ccaagaacgt 4321 catygccaac aaygctgacc gttccgaycc ggactggcgc tacacctggg tccgaatytt 4381 ygccaaggcc carcacaaag tcaacgcggc tagcatcttc accgaytaca aggcctgyca 4441 gaccctcgcc ctcatgcatg attacgtgat cctcactctt ggtccagtca agaagtacca 4501 acgtgtcatc cacgccagat atcgtccagg caacatctay atccatgcgg ctcattcccc 4561 ccaaggcctt tccgagtatt gccagcgaca cttgaagagy caactggcac tcactaacga 4621 ttatacsgcc ttcgaccaga gccaacatgg agaggccgtg gtgttcgaac gcgagaagat 4681 ggcccaactg ggcatcccgc aacagctcat cgacctacat gttttcctca agaccaacgt 4741 cgagactcaa ttcggscccc tcacctgcat gagacttact ggcgagccrg gcacctacga 4801 tgacaacacw gactacaatc tcgccatcct ttccctccgc tacctgctta cccatcaaca 4861 cgtggtcttc gtsagcggag acgactcrgc cattttccca cccccgtctg acaacccgag 4921 gtggaaggtc atcgagccac tcatagccct gcgcttcaaa atacagatcg atcgttaccc 4981 gctcttctgc ggatactacc tcgggccggc aggagcttgc cgtgayccac tcgccctttt 5041 ygccaaattc gctatcgcat atgacgcraa cgagcttgaa ctcaagatgc cctcctacat 5101 agccgaattc tccatcggcc acttgctcgg ggaygccgtc tcctcacttc ttccrccctc 5161 ccacatcctc ttcyactcag cggtcttcga cctcatytgc cgccgcgcga cggtcgacca 5221 gaagacaatc ttraacatcc acacagctcc ggagcaccgc cttctccgct tccttcaacg 5281 cgcccgctac ttcacttaca cagcrgcccg yatactccag gcggctctcg gcrtcactcc 5341 catygtcaac gcttccggcg atctcccgct ggagccaacg gtagagggtg aattgcttct 5401 ccctggccac gatggaactc ctgctcgagg cgctcgctcc rctgctcact aagaccgcrt 5461 cctcactcac cgctcccagc cccactccat caaccgaacc ctccgccaac actgaactca 5521 aaccagccgc tcctcaatct aatgccatcg ttgcgagtac tgctcgcatt cctgctactc 5581 cttctctggt cgctactcct ctatctcgtg accctagcct taagatccct tttcagttcg 5641 ctcttggcag ggtctcctcc gccgacgaca aaggyatcga ctacgtcttc tccagcattc 5701 cccagttcac aaagctcgtc gctccttacc grcgtgcccg tctctgctct cttgaggccg 5761 tgctcgagcc cctcgcgccc ctaagyaatg gctactccat catcctctgc tggactcagg 5821 ctaacaacgt cgttgttggc gctgaytctc ttgctgtccc cggcgcccag ctcttctcag 5881 cgaccaagta cgccgtyctc acccagtccc aagttctccc agctcctctc cacgccctta 5941 acccaatggt caaggattcc gttacctata ccgactctcc aagattgcac atcgccccct 6001 tcaaactgga cgacccggga gcygccctgc tcgttctccg aggcgtcctt gaagtctctt 6061 ctccggctct tgttgccaat actacatgat cacggctaca tcccaaaatc atgccgcacc 6121 tgcttcaatt attggggcct cccccccatc ccaaacctta ataccctcac attccccgat 6181 gccacgggaa atgtctaggc ctttgggtcg caagaccgcc gggcctggag tttccaagtt 6241 ctcyaaaaaa aaaaaaaa //