LOCUS NC_004452 3644 bp RNA linear VRL 11-MAR-2010 DEFINITION Beet black scorch virus, complete genome. ACCESSION NC_004452 VERSION NC_004452.3 DBSOURCE BioProject accession PRJNA14949 KEYWORDS RefSeq. SOURCE Beet black scorch virus ORGANISM Beet black scorch virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; Betanecrovirus. REFERENCE 1 (bases 1 to 3644) AUTHORS Yuan,X., Cao,Y., Xi,D., Guo,L., Han,C., Li,D., Zhai,Y. and Yu,J. TITLE Analysis of the subgenomic RNAs and the small open reading frames of Beet black scorch virus JOURNAL J. Gen. Virol. 87 (PT 10), 3077-3086 (2006) PUBMED 16963767 REFERENCE 2 (bases 1 to 3644) AUTHORS Cao,Y., Cai,Z., Ding,Q., Li,D., Han,C., Yu,J. and Liu,Y. TITLE The complete nucleotide sequence of Beet black scorch virus (BBSV), a new member of the genus Necrovirus JOURNAL Arch. Virol. 147 (12), 2431-2435 (2002) PUBMED 12491108 REFERENCE 3 (bases 1 to 3644) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (09-JUL-2004) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 4 (bases 1 to 3644) AUTHORS Cao,Y., Yu,J. and Cai,Z. TITLE Direct Submission JOURNAL Submitted (08-JUL-2004) State Key Laboratory for Agrobiotechnology, China Agricultural University, 2 Yuanmingyuan West Road, Beijing, Beijing 100094, China REMARK Sequence update by submitter REFERENCE 5 (bases 1 to 3644) AUTHORS Cao,Y., Yu,J. and Cai,Z. TITLE Direct Submission JOURNAL Submitted (30-DEC-2002) State Key Laboratory for Agrobiotechnology, China Agricultural University, 2 Yuanmingyuan West Road, Beijing, Beijing 100094, China REMARK Sequence update by submitter REFERENCE 6 (bases 1 to 3644) AUTHORS Cao,Y., Yu,J. and Cai,Z. TITLE Direct Submission JOURNAL Submitted (28-NOV-2001) State Key Laboratory for Agrobiotechnology, China Agricultural University, 2 Yuanmingyuan West Road, Beijing, Beijing 100094, China COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AF452884. On Jul 9, 2004 this sequence version replaced gi:27436729. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3644 /mol_type="genomic RNA" /db_xref="taxon:196375" /organism="Beet black scorch virus" gene 36..2210 /locus_tag="Bbsvgp1" /db_xref="GeneID:956212" CDS 36..2210 /locus_tag="Bbsvgp1" /protein_id="NP_758810.3" /note="RNA polymerase; ORF2; produced by translational readthrough of ORF1" /db_xref="GeneID:956212" /codon_start=1 /product="82K protein" /translation="MDSIPYVILRILDFIFHSIFFPSLLFIINHNTTILWACACAYGF YRAFRLIFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPT HKDIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHI AHAVPLAVAACFIPLDSDFLAASIRNCDEMEERRAVLGPSYGKXGGLLCTSGFTTPTW RGNPEGLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKD GLAPTPQPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERYQQAVESLA IRPIGVQDAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDA INRVYGGRTVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHKI WLSMYRGADRKTLSKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMC ASVHNYCSQLGVKRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVY ELEHLEFCQTRPVLVDGAYRMVRNLHQGMSKDLHSLHDLGSRKAAEAWVSAVGSGGRV MNDGVPVLKSFFMQFPLSSGPKTKSDMSVALQEDWKYKFNRTGCFKNLAPTPQSRYSF WRAFGVLPDEQIALENGFSRLSFDKLDQDTQEEVSLLQFSGA" /transl_except=(pos:645..647,aa:OTHER) gene 36..647 /locus_tag="Bbsvgp2" /db_xref="GeneID:956211" CDS 36..647 /locus_tag="Bbsvgp2" /db_xref="GeneID:956211" /codon_start=1 /protein_id="NP_758811.1" /translation="MDSIPYVILRILDFIFHSIFFPSLLFIINHNTTILWACACAYGF YRAFRLIFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPT HKDIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHI AHAVPLAVAACFIPLDSDFLAASIRNCDEMEERRAVLGPSYGK" /product="22K protein" /note="RNA polymerase; ORF1" gene 2107..2244 /locus_tag="Bbsvgp3" /db_xref="GeneID:956213" CDS 2107..2244 /locus_tag="Bbsvgp3" /db_xref="GeneID:956213" /codon_start=1 /protein_id="NP_758812.3" /translation="MNRLPWRMGFLVSALISWTRTPRRRSASSSSLGHENLTTFHGTT A" /product="5K protein" /note="ORF3" gene 2228..2419 /locus_tag="Bbsvgp4" /db_xref="GeneID:956215" CDS 2228..2419 /locus_tag="Bbsvgp4" /db_xref="GeneID:956215" /codon_start=1 /protein_id="NP_758813.2" /translation="MEQQRSEQRRERRVRSRSEDRKSMSDVGQSAVNREADVKKDMGP SVSMTVVGENVEFTQHFHF" /product="7K protein A" /note="ORF4" gene 2421..2618 /locus_tag="Bbsvgp5" /db_xref="GeneID:956210" CDS 2421..2618 /locus_tag="Bbsvgp5" /db_xref="GeneID:956210" /codon_start=1 /protein_id="NP_758814.2" /translation="MSIIYVVQEKPSGFLVWALVVAIVCIIGLLSYTPPERLNHSYHE NNQKTQYITIGGASTSKVSTN" /product="7K protein B" /note="ORF5" gene 2647..3345 /locus_tag="Bbsvgp6" /db_xref="GeneID:956214" CDS 2647..3345 /locus_tag="Bbsvgp6" /db_xref="GeneID:956214" /codon_start=1 /protein_id="NP_758815.2" /translation="MAPKRNKGGKKSRMSDETVRAPAAGGVIQRTPGIPPRIRSTTIG TRVTNTELLAGVNVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLAIKLIYIPIV PTTTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGERPTTGA VCIDVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGTAATNVGNLMIK YSIELIEPIPAAIN" /product="coat protein" /note="virus shell; ORF6" ORIGIN 1 aagaaaccta accagtttct cgttgatcag cgatcatgga ttcaatcccg tatgtgatcc 61 tgcgcatact cgattttatc ttccactcca tcttctttcc atctttactc tttatcatca 121 accacaacac caccatcctg tgggcatgtg cctgtgccta tgggttctac cgtgcattcc 181 gcctcatctt caagataaag gtggaagtac acccagccac ccgagccgtc ttcaaggata 241 tggtcactcg cttccagcgg gagagtatgt tctcacctga cgacgaagtg ccggagggca 301 tccctatcca cgaggatgtt gaccttgtta gcgaccccac acacaaagat attaagcggg 361 tccgtgctag caggcgagtc tcttatgccg tgagggttgc ccatgtagcc aagtctaagg 421 tgggattgct cgccaatacc aaggcgaatg agctggtgta ctcccgtctt tgccgagacg 481 agatggttac ccacggtgtg cgcccatcgc acattgcaca cgcagtgccg cttgctgtcg 541 cggcctgctt cataccgttg gacagtgatt tccttgcagc ttctattaga aactgcgatg 601 agatggagga gcggagggcc gtactagggc cctcatatgg aaaataggga ggcctactct 661 gcaccagcgg gtttaccacg cctacttggc gtggtaatcc agagggtttg ctggtgaaga 721 gaggaccacc tctggctaaa cctaggaaac tgtaccgttt ttctgggttt gggactcata 781 tacggtacgg agtgcacgat cactcattgg gcaatgttcg gaggggactt gttgagcggc 841 tattcatggt tgaaaccaag gatggcttag ctccaacacc acagcccacc cctggcgtgt 901 acgccaagtt atcccggttt catgaccttg ttagtgccaa cctaacctcg accaccagat 961 taacatacga gcaattcctc ggattttatt ctggtcgcaa attagagagg taccaacagg 1021 ccgtggagtc gttagcaatc cgcccaatag gggtacagga tgcttggctt agcacgtttg 1081 ttaaggctga aaaattaaac atctcagcca aacccgaccc ggcacctagg gttattcagc 1141 ctaggtcgcc gaggtacaat gtggaagttg gacggttcct cagacacgct gaggaacatc 1201 tgttcgacgc catcaaccgt gtgtatggtg ggcgaacggt attcaagggg ttgaatgccg 1261 atcaggctgg catggagatg caagctatgt ggcaagaatt cgacaatcct gtgggtattg 1321 gtatggatgc ctctcgtttc gaccaacacg tctctaagga ggcgttggag tttgaacaca 1381 aaatctggct atccatgtac cgtggggctg acaggaaaac attgtcgaag ctgttgggga 1441 tgcaaatcca caaccgcggt cttgccagat gccctgatgg agaaatcagg tacacggttg 1501 aggggtgtcg tatgtctggg gacatcaaca catcttctgg aaactgctat atcatgtgtg 1561 cttcggtgca caattattgc agccagttgg gtgtcaagag attcaggctt gccaacaatg 1621 gtgatgattg catgcttgtc gtcgaagcca aggatgaagc acgtgtcagg cagggactca 1681 tcgagtatta tagggaattg ggtttcacca tgaaagtgga acctacagtc tatgaactcg 1741 agcacttgga gttttgccag acacgtccag tccttgtcga tggggcatat cgaatggtgc 1801 gcaatcttca ccagggcatg tctaaggatc ttcactcctt gcacgatctt ggtagtagga 1861 aagctgctga agcttgggtt tcagcggttg gtagtggagg ccgcgtgatg aatgatggag 1921 taccagtgct caaatcattc ttcatgcagt ttcccctatc ttctggacct aaaaccaagt 1981 ctgacatgag tgtagcgttg caggaagatt ggaaatacaa attcaatcgg actgggtgtt 2041 tcaagaactt ggcacccact ccacaatccc gctactcatt ttggcgtgcg tttggagtgc 2101 taccagatga acagattgcc ctggagaatg ggttttctcg tctcagcttt gataagctgg 2161 accaggacac ccaggaggag gtcagcctcc tccagttctc tggggcatga aaacctaacc 2221 acttttcatg gaacaacagc gtagtgaaca acgtcgtgag cgtagagtga gaagtagatc 2281 ggaggacagg aagtctatgt ctgatgtagg gcaatctgct gtcaataggg aagcagatgt 2341 caagaaagat atgggtccat cggtttctat gacggtggtg ggggagaacg tagagtttac 2401 acaacatttc cacttctgaa atgagcatca tttatgtcgt acaggagaag ccctctgggt 2461 ttctcgtgtg ggcattggtt gttgcaattg tgtgcattat tggactctta tcgtacactc 2521 cacctgaaag acttaaccac tcttatcacg aaaacaatca gaagacgcaa tacataacta 2581 ttggaggagc atccactagt aaagtttcca cgaactgaat tttctgcttt ctagtatagt 2641 caataaatgg cacctaagcg caataaagga ggcaagaagt cccgcatgtc cgatgagaca 2701 gtgcgggctc ctgctgcagg gggcgttata caacgcacac ctggcattcc tccccgcatt 2761 aggtccacca ctattggtac gcgtgtcacc aacactgagc tgctcgctgg agtgaatgtc 2821 gctgcggcgg gagctttctc agttgttggc gctggtcttt tccccagcaa ccttggttgg 2881 ctcaatggga ttgcttccaa ttatagcaaa tttagatggc ttgctatcaa gctcatctac 2941 attcccattg ttcctaccac gaccgctggg gcaatgacca tggctttatc gtatgatcct 3001 gctgatgcta cgccaactag tttccaacaa gtgcaacaga tgtataacag catcacagca 3061 cctgtctggg ctggatttga tggagctact gttcagctgc taggggagag accaacaact 3121 ggggctgtgt gcattgatgt ggatgtaaat cggtttggat ttacatggta cagatatgct 3181 acgcttgctg ccattaccgc actcactgca aatgatagga atctttatat tcctagtgtt 3241 tgcaatgtgg ctacgtctgg tggtactgca gccaccaatg ttggcaatct gatgataaag 3301 tacagcattg agctcattga gccaatacct gctgccatta attagatccc acatcctggt 3361 gtggttaatc cagtgaaaaa tattaggaaa tccttgggat tcacacccca gggaggattg 3421 cttgcatagt gcaggtatgt tgagttacac tatgaggtat tggtgctgaa tcctggtaaa 3481 caggcttgac aggtttgggt ggttccagac cgatgtatta cccaagatac tcatggtact 3541 ctactagaaa acactatgcg tgcgcacacg gctggctatg tcctatcata gctgggggcc 3601 ccggagtgcg aaaccctctt atatacctgg tcttccaggt gccc //