LOCUS FN543421 3644 bp RNA linear VRL 20-JAN-2010 DEFINITION Beet black scorch virus complete genome, isolate Ir-Ksh1, genomic RNA. ACCESSION FN543421 VERSION FN543421.2 KEYWORDS complete genome. SOURCE Beet black scorch virus ORGANISM Beet black scorch virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; Betanecrovirus. REFERENCE 1 AUTHORS Mehrvar,M. and Bragard,C. TITLE Beet black scorch virus satellite is linked with a single 3' untranslated region and contain a partial Argonaute sequence JOURNAL Unpublished REFERENCE 2 (bases 1 to 3644) AUTHORS Mehrvar,M. TITLE Direct Submission JOURNAL Submitted (18-AUG-2009) Mehrvar M., Phytopathology (FYMY), UCL University, SE/AGRO:BAPA/FYMY, Croix du sud, 2, bte.03, Louvain-la-Neuve/1348, BELGIUM FEATURES Location/Qualifiers source 1..3644 /mol_type="genomic RNA" /country="Iran:Kermanshah, Dolah" /collected_by="Mohsen Mehrvar" /collection_date="Sep-2006" /host="Beta vulgaris" /db_xref="taxon:196375" /isolate="Ir-Ksh1" /organism="Beet black scorch virus" CDS join(36..644,648..2210) /db_xref="GOA:D2TGC4" /db_xref="InterPro:IPR002166" /db_xref="InterPro:IPR007094" /db_xref="InterPro:IPR013707" /db_xref="UniProtKB/TrEMBL:D2TGC4" /ribosomal_slippage /codon_start=1 /protein_id="CBH40100.1" /translation="MDSIPYVILRILDFIFHSIFFPSLLFIIKHNTTILWACLCTYGF YRTFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPT HKDIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHI AHAVPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGKGGLLCTSGFTTPTWR GNPEGLLVKRGPPLAKPRKLYRFSGFGTHIRYGVHDHSLGNVRRGLVERLFMVETKDG LAPTPKPTPGVYAKLSRFHDLVSANLTSTTRLTYEQFLGFYSGRKLERCQQAVESLAI RPIGVQDAWLSTFVKAEKLNISAKPDPAPRVIQPRSPRYNVEVGRFLRHAEEHLFDAI NRVYGGRTVFKGLNADQAGMEMQAMWQEFDNPVGIGMDASRFDQHVSKEALEFEHKIW LSMYHGSDRKTLAKLLGMQIHNRGLARCPDGEIRYTVEGCRMSGDINTSSGNCYIMCA TVHNYCSRLGVKRFRLANNGDDCMLVVEAKDEARVRQGLIEYYRELGFTMKVEPTVYE LEHLEFCQTRPVLVDGAYRMVRNLHQGMSKDLHSLHDLGSRKAAEAWVSAVGSGGRVM NDGVPVLKSFFMQFPLSAAPKTRSDMSIALQEDWKYKFNRTGCFRNLAPTPQSRYSFW RAFGVLPDEQIALENGFSRLSFDKLDQDIQEEVSLLQFSGA" /product="RNA-dependent RNA polymerase, p82" /note="ORF2; produced by translational readthrough of ORF1" CDS 36..647 /db_xref="GOA:D2TGC5" /db_xref="InterPro:IPR013707" /db_xref="UniProtKB/TrEMBL:D2TGC5" /codon_start=1 /protein_id="CBH40101.1" /translation="MDSIPYVILRILDFIFHSIFFPSLLFIIKHNTTILWACLCTYGF YRTFRLVFKIKVEVHPATRAVFKDMVTRFQRESMFSPDDEVPEGIPIHEDVDLVSDPT HKDIKRVRASRRVSYAVRVAHVAKSKVGLLANTKANELVYSRLCRDEMVTHGVRPSHI AHAVPLAVAACFIPLDSDFLAASIRNCQEMEERRAVLGPSYGK" /product="RNA polymerase, p23" /note="ORF1" CDS 2228..2419 /db_xref="UniProtKB/TrEMBL:Q8B5R7" /codon_start=1 /protein_id="CBH40102.1" /translation="MEQQRSEQRRERRVRSRSEDRKSMSDVGQSAVNREADVKKDMGP SVSMTVVGENVEFTQHFHF" /product="7K protein A, p7a" /note="ORF3" CDS 2421..2618 /db_xref="UniProtKB/TrEMBL:B3U3L9" /codon_start=1 /protein_id="CBH40103.1" /translation="MGTIYVVREEPSGFLVWAFVVAIVCIIGLLSYTPPERLNHSYHE NNQKTQYITIGGASTSKVSTN" /product="7K protein B, p7b" /note="ORF4" CDS 2434..2577 /db_xref="UniProtKB/TrEMBL:D2TGC8" /codon_start=1 /protein_id="CBH40104.1" /translation="MLFAKNPQGSSCGHSLLQLCVSSDSYRTPHLKDLTTLITKIIRR RNT" /product="5K protein A, p5a" /note="ORF5" CDS 2647..3345 /db_xref="GOA:D2TGC9" /db_xref="InterPro:IPR000937" /db_xref="UniProtKB/TrEMBL:D2TGC9" /codon_start=1 /protein_id="CBH40105.1" /translation="MAPKRNKGGRKIRMSDETVRAPAAGGVIQRTPGIPPRIRSTTIG TRVSNTELLAGVNVAAAGAFSVVGAGLFPSNLGWLNGIASNYSKFRWLSIKLIYIPIV PTTTAGAMTMALSYDPADATPTSFQQVQQMYNSITAPVWAGFDGATVQLLGDRPTTGA VCIDVDVNRFGFTWYRYATLAAITALTANDRNLYIPSVCNVATSGGSAATNVGNLMIK YSIELIEPIPAAIN" /product="coat protein, p25" /note="ORF6" CDS 3410..3547 /db_xref="UniProtKB/TrEMBL:D1GV46" /codon_start=1 /protein_id="CBH40106.1" /translation="MEDCLHDAGMLSHTVRYRCWILVNRLDRFGWFQTDVSLEIFIVL S" /product="5K hypothetical protein B, p5" /note="ORF7" ORIGIN 1 aagaaaccta accagtttct cgttgatcag cgatcatgga ttctatcccg tacgtgatcc 61 tgcgcatact tgattttatc tttcactcca tcttctttcc atcccttctc tttatcatca 121 aacacaacac caccatccta tgggcttgtc tatgtaccta tgggttctac cgtactttcc 181 gcctagtctt caagatcaag gttgaggtac acccagccac ccgtgctgtc tttaaggaca 241 tggtcacccg tttccagcgg gagagtatgt tctcacccga cgatgaagtg cctgagggca 301 tccctatcca cgaggacgta gaccttgtta gcgaccccac acacaaagat attaagaggg 361 tccgagctag caggcgagtc tcatacgctg tgagggttgc tcatgtagcc aagtcaaagg 421 tgggactact cgcgaacacc aaggcaaatg agctggtgta ttctcggctt tgtcgagatg 481 agatggttac ccacggtgtg cgcccatcac acattgcgca tgcagtgccg ctcgctgtcg 541 cggcctgctt tattccactg gacagtgatt tcttggcagc atcaattaga aactgccagg 601 agatggaaga gcggagggcc gttttagggc cctcatatgg aaaataggga ggcctactct 661 gcaccagcgg gtttaccaca ccaacttggc gtggtaatcc agagggtttg ctggtgaaga 721 gaggaccacc tctggccaaa cccagaaaac tgtaccgttt ttctggattt gggactcata 781 tacggtacgg agtgcacgat cactccttgg gcaatgttcg gaggggactt gtcgagcggc 841 tattcatggt agagaccaag gatggtcttg ctccgacacc aaagcccacc cctggcgtgt 901 atgccaagtt atcccggttc catgaccttg ttagtgctaa tctaacctcg accaccagat 961 taacatacga gcaattcctc ggattttatt ctggtcgcaa attggagagg tgccaacagg 1021 ctgtggagtc gttagcaatc cgccctatag gggtccagga tgcttggctc agcacgttcg 1081 ttaaggctga aaaactcaac atctcagcta aacccgaccc ggcacctagg gtcattcagc 1141 ccaggtcgcc gcggtacaat gtggaggttg gacggttcct cagacatgct gaggaacatc 1201 tgttcgatgc tattaaccgt gtgtatggtg gacggacagt attcaagggg ttgaatgctg 1261 atcaggctgg catggagatg caagccatgt ggcaagaatt tgacaatcct gtcggtattg 1321 gcatggacgc ctctcggttt gatcaacacg tttccaagga ggcgttggag ttcgaacaca 1381 agatatggtt gtccatgtac catggctctg acaggaaaac attggcaaag ctgttgggga 1441 tgcaaatcca caatcgcggt cttgctagat gtcctgatgg ggaaatcagg tacacggttg 1501 aagggtgtcg tatgtctgga gacattaaca cctcttccgg caactgttat ataatgtgcg 1561 caactgtgca caattattgc agccggttgg gtgttaagag gttcaggctt gccaacaatg 1621 gtgatgattg catgctagtc gtggaagcta aggatgaagc gcgtgtaagg caagggctta 1681 ttgaatacta tagggagttg ggattcacaa tgaaagtgga acccactgtc tatgaacttg 1741 agcatcttga gttttgccaa acccgcccag tcctggttga tggggcttac agaatggtgc 1801 gcaatctaca ccagggcatg tcgaaggacc tacactcctt gcatgatctt ggaagtagga 1861 aagctgccga ggcatgggtc tcagcagttg gcagtggggg acgagtgatg aatgacgggg 1921 tgcctgtact caagtcgttc tttatgcagt ttcccctttc tgctgctcct aaaaccaggt 1981 ctgatatgag tatagcgttg caggaagatt ggaaatacaa attcaatcgg actgggtgtt 2041 ttagaaattt agcacccact ccacaatccc gctactcatt ttggcgtgca tttggagtgt 2101 tgccagatga acagattgcc ctggaaaacg gattttctcg tctgagtttt gataaactag 2161 accaggatat ccaggaggag gttagccttc tccagttttc tggggcatga aaacctaacc 2221 acttttcatg gaacaacagc gtagtgaaca gcgtcgtgaa cgtagggtga gaagcagatc 2281 ggaggacagg aagtctatgt ctgatgtggg acagtctgca gtcaataggg aagcagacgt 2341 caagaaagac atgggtccat cggtctctat gacggtggtg ggggagaacg tggagttcac 2401 acaacatttc cacttctgaa atgggcacaa tctatgttgt tcgcgaagaa ccctcagggt 2461 tcctcgtgtg ggcattcgtt gttgcaattg tgtgtatcat cggactctta tcgtacaccc 2521 cacctgaaag acttaaccac tcttatcacg aaaataatca gaagacgcaa tacataacta 2581 ttggaggagc atccactagt aaggtttcca cgaactgaat ttactgcttt ctagtataga 2641 taataaatgg cacctaaacg caacaaagga ggtaggaaga tccgcatgtc cgatgagacg 2701 gtgcgagctc ctgctgctgg tggtgtgata caacgcacac ccggtattcc cccacgtatt 2761 aggtccacca ctattggtac gcgagtatcc aacacagaat tacttgctgg tgtcaatgtt 2821 gcagcagcag gtgcattttc tgtcgttgga gccggtcttt tccctagcaa ccttggttgg 2881 cttaatggga ttgcttccaa ttacagcaag tttagatggc tttctataaa gctcatctat 2941 attcccattg tccctacaac cactgctggc gctatgacca tggctttatc atacgacccg 3001 gctgatgcta cacctaccag cttccaacaa gtgcaacaga tgtataacag cataactgca 3061 cctgtatggg ctggatttga tggagctact gttcagctat tgggggatcg cccaacaact 3121 ggtgccgtgt gtatcgacgt tgatgtcaat cgatttggat tcacatggta caggtacgca 3181 accttagccg ctatcacagc actcactgca aacgacagga atctgtatat tcctagcgtt 3241 tgcaatgtgg ctacttctgg cggatcagct gcgactaatg ttggcaactt aatgataaag 3301 tacagcattg agctcattga gcccataccc gctgccatca attagacccc acatcctggt 3361 gtggttaatc cagtgaaaaa tattaggaaa tccatgggat tcacacccca tggaggattg 3421 cttgcatgat gcaggtatgc ttagtcacac tgtgaggtat cgatgctgga tcctggtaaa 3481 caggcttgac aggtttgggt ggttccaaac cgatgtatca ctcgagatat tcatagtact 3541 aagctagaaa acatcatgcg tgcgcacacg gccggctacg tcctatcgta gtcgggggct 3601 ccggagtgcg aaaccctctt atatacctgg tcttccaggt gccc //