TAXID NAME SOURCE LOCATION HOST DISEASE 46125 Abiotrophia defectiva Human clinical samples Homo sapiens endocarditis 32002 Achromobacter denitrificans nasopharynx USA:Kansas Bos taurus; Homo sapiens bacteremia; infections 72556 Achromobacter piechaudii Human clinical samples Homo sapiens bacteremia; infections 562971 Achromobacter xylosoxidans C54 non-cystic fibrosis bronchiectasis sputum Homo sapiens bacteremia; infections 85698 Achromobacter xylosoxidans Broviac blood; sputum; lung;pus USA:DC; USA: Minneapolis; Japan Homo sapiens bacteremia; infections 905 Acidaminococcus fermentans Human clinical samples Capra hircus; Homo sapiens Unknown 397945 Acidovorax citrulli AAC00-1 fruit NA Cucurbitaceae Bacterial fruit blotch 696749 Acinetobacter baumannii 1656-2 Human clinical samples NA Homo sapiens Nosocomial infections 470 Acinetobacter baumannii Bodily fluid; human clinical samples Colombia; UK; Canada; US; Malaysia; India; Australia; South Korea; China Homo sapiens Nosocomial infections 480119 Acinetobacter baumannii AB0057 bloodstream infection of a patient at Walter Reed Army Medical Center Walter Reed Army Medical Center Homo sapiens Nosocomial infections 1413216 Acinetobacter baumannii AB07 wound infection of a hospitalized patient India: Pondicherry Homo sapiens Nosocomial infections 557600 Acinetobacter baumannii AB307-0294 the blood of a hospitalized patient USA: Buffalo NY Homo sapiens Nosocomial infections 405416 Acinetobacter baumannii ACICU outbreak Rome Homo sapiens Nosocomial infections 400667 Acinetobacter baumannii ATCC 17978 case of meningitis NA Homo sapiens Nosocomial infections 509173 Acinetobacter baumannii AYE Human clinical samples NA Homo sapiens Nosocomial infections 1096995 Acinetobacter baumannii BJAB07104 Blood China: Beijing Homo sapiens Nosocomial infections 1096996 Acinetobacter baumannii BJAB0715 cerebrospinal fluid China: Beijing Homo sapiens Nosocomial infections 1096997 Acinetobacter baumannii BJAB0868 ascites China: Beijing Homo sapiens Nosocomial infections 1455315 Acinetobacter baumannii LAC-4 unavailable USA: Los Angeles County; California Homo sapiens Bacterial infection 497978 Acinetobacter baumannii MDR-ZJ06 Human clinical samples NA Homo sapiens Nosocomial infections 509170 Acinetobacter baumannii SDF body lice collected from hoMeless people living France Pediculus humanus Nosocomial infections 106648 Acinetobacter berezinae Human clinical samples Homo sapiens Bloodstream infection 471 Acinetobacter calcoaceticus Human clinical samples Apis mellifera; Avena sativa; Betula pendula; Culex quinquefasciatus; Gynura procumbens; Helicoverpa armigera; Homo sapiens; Lantana camara; Musca domestica; Phaseolus vulgaris; Plantago lanceolata; Plectranthus barbatus; Solanum nigrum; Sorbus aucuparia; Turbo kenwilliamsi; Zingiber officinale infections 29430 Acinetobacter haemolyticus Human clinical samples Anopheles stephensi; Homo sapiens; Leptinotarsa decemlineata; Musca domestica; Phaseolus vulgaris Bloodstream infection 40214 Acinetobacter johnsonii Human clinical samples Anopheles stephensi; Beta vulgaris; Homo sapiens; Populus euphratica; Takifugu rubripes; Taxus globosa; Tectona grandis; Ulva rigida Bloodstream infection 40215 Acinetobacter junii Human clinical samples Acipenser schrenckii; Apocynum venetum; Culex quinquefasciatus; Cyprinus carpio; Homo sapiens; Ictalurus punctatus; Kareius bicoloratus; Nicotiana attenuata; Oreochromis niloticus; Pandora neoaphidis; Pandora nouryi; Ulva rigida Bloodstream infection 28090 Acinetobacter lwoffii Human clinical samples Anopheles stephensi; Culex quinquefasciatus; Dendroctonus rhizophagus; Dendroctonus valens; Echinacea angustifolia; Homo sapiens; Moschus berezovskii; Musa acuminata; Populus euphratica; Takifugu rubripes; Taxus globosa; Ulva australis; Zea mays Bloodstream infection 134533 Acinetobacter parvus Human clinical samples Homo sapiens Bloodstream infection 40216 Acinetobacter radioresistens Human clinical samples Anopheles stephensi; Culex quinquefasciatus; elaeis guineensis; Homo sapiens; Phaseolus vulgaris Bloodstream infection 465797 Acinetobacter septicus Human clinical samples Homo sapiens Bloodstream infection 108980 Acinetobacter ursingii Human clinical samples Homo sapiens; Labeo rohita Bloodstream infection 106654 Acinetobacter nosocomialis strain 6411 Excreted bodily substance Colombia Homo sapiens infections 1324350 Acinetobacter sp. 114 Equus caballus dung Germany:Minsleben Equus caballus infections 202947 Actinobacillus equuli subsp. equuli 19392 NA NA Equus caballus; Sus scrofa sleepy foal disease 719 Actinobacillus hominis Homo sapiens infections 720 Actinobacillus lignieresii Bos taurus; Homo sapiens; Ovis aries Unknown 434271 Actinobacillus pleuropneumoniae serovar 3 str. JL03 NA NA Sus scrofa Fibrinous pleuropneumonia; Necrotizing pleuropneumonia 416269 Actinobacillus pleuropneumoniae serovar 5b str. L20 NA NA Sus scrofa Fibrinous pleuropneumonia; Necrotizing pleuropneumonia 537457 Actinobacillus pleuropneumoniae serovar 7 str. AP76 Sus scrofa lung NA Sus scrofa Fibrinous pleuropneumonia; Necrotizing pleuropneumonia 754345 Actinobacillus pleuropneumoniae serovar 8 Sus scrofa lung NA Sus scrofa Fibrinous pleuropneumonia; Necrotizing pleuropneumonia 696748 Actinobacillus suis H91-0380 Sus scrofa with septicemia NA Sus scrofa Septicemia 723 Actinobacillus ureae Homo sapiens infections 59505 Actinobaculum schaalii strain CCUG 27420 Human blood; chronic pyelonephritis;64-yr-old man Sweden: Kristianstad Homo sapiens infections 240840 Actinomadura meyerae Human clinical samples Homo sapiens infections 1993 Actinomadura madurae Human clinical samples Homo sapiens infections 111805 Actinomadura pelletieri Human clinical samples Homo sapiens infections 181487 Actinomyces cardiffensis Human clinical samples Homo sapiens actinomycosis 272548 Actinomyces dentalis Human clinical samples Homo sapiens dental abcesses 52767 Actinomyces denticolens Human clinical samples Homo sapiens abcesses 132933 Actinomyces funkei Human clinical samples Homo sapiens actinomycosis 52768 Actinomyces georgiae Human clinical samples Homo sapiens actinomycosis 52769 Actinomyces gerencseriae Human clinical samples Homo sapiens actinomycosis 55565 Actinomyces graevenitzii Human clinical samples Homo sapiens actinomycosis 1659 Actinomyces israelii Human clinical samples Homo sapiens actinomycosis 461393 Actinomyces massiliensis Human clinical samples Homo sapiens infections 52773 Actinomyces meyeri strain W712 curette United Kingdom: London Homo sapiens actinomycosis; brain abcesses 1655 Actinomyces naeslundii human oral cavity Homo sapiens actinomycosis; periodontitis 33007 Actinomyces neuii Human clinical samples Homo sapiens actinomycosis 1660 Actinomyces odontolyticus Human clinical samples Homo sapiens actinomycosis 206043 Actinomyces oricola dental abcess Homo sapiens dental abcesses 544580 Actinomyces oris strain T14V human oral cavity USA: Boston; MA Homo sapiens periodontitis 111015 Actinomyces radicidentis strain CCUG 36733 human oral cavity Sweden Homo sapiens periodontitis 131110 Actinomyces radingae Human clinical samples Homo sapiens actinomycosis 131111 Actinomyces turicensis Human clinical samples Homo sapiens infections 103621 Actinomyces urogenitalis Human clinical samples Homo sapiens bacteremia 1656 Actinomyces viscosus Human clinical samples Canis lupus familiaris; Homo sapiens actinomycosis 712122 Actinomyces sp. oral taxon 414 strain F0588 curette USA: Boston; MA Homo sapiens periodontitis 1384484 Adlercreutzia equolifaciens DSM 19450 human faeces NA Homo sapiens Unknown 87541 Aerococcus christensenii strain CCUG28831 Human vagina USA: Washington Homo sapiens bacterial vaginosis 119206 Aerococcus sanguinicola strain CCUG43001 Human blood Denmark: Esbjerg Homo sapiens bacteremia; UTI 866775 Aerococcus urinae ACS-120-V-Col10a Human clinical samples NA Homo sapiens bacteremia; UTI 1376 Aerococcus urinae strain CCUG36881 Human urine Denmark: Copenhagen Homo sapiens bacteremia; UTI 51665 Aerococcus urinaeequi strain CCUG28094 Equus caballusurine Not applicable Equus caballus bacteremia; UTI 51665 Aerococcus urinaeequi strain USDA-ARS-USMARC-56713 nasopharynx USA:Kansas Bos taurus bacteremia; UTI 128944 Aerococcus urinaehominis strain CCUG42038B Human urine Sweden: Linkoping Homo sapiens bacteremia; UTI 1377 Aerococcus viridans Human clinical samples Bos taurus; Homo sapiens bacteremia 642 Aeromonas aquariorum Human clinical samples Homo sapiens septicemia 105751 Aeromonas bestiarum Human clinical samples Anguilla Anguilla; Homo sapiens; Onchorhynchus mykiss; Petromyzon marinus; Salmo salar infections 648 Aeromonas caviae strain FDAARGOS_72 Stool USA Homo sapiens traveler's diarrhea 648 Aeromonas caviae strain FDAARGOS_75 Stool USA Homo sapiens traveler's diarrhea 29489 Aeromonas enteropelogenes Human clinical samples Anopheles stephensi; Culex quinquefasciatus; Homo sapiens; Parastromateus niger; Procambarus clarkii infections 1418110 Aeromonas hydrophila AL09-71 NA USA: Alabama Ictalurus punctatus Wound infection; abscesses; septicaemia; meningitis; leech-bite infection; alligator-bite infection; acute diarrhoea 1288394 Aeromonas hydrophila ML09-119 disease outbreak on a commercial catfish farm; it is representative of a clonal group of A USA: Alabama Ictalurus punctatus Wound infection; abscesses; septicaemia; meningitis; leech-bite infection; alligator-bite infection; acute diarrhoea 644 Aeromonas hydrophila strain D4 diseased Megalobrama amblycephala China: Dong xihu; Wuhan Megalobrama amblycephala Wound infection; abscesses; septicaemia; meningitis; leech-bite infection; alligator-bite infection; acute diarrhoea 644 Aeromonas hydrophila strain JBN2301 Blood of diseased crucian carp China: Guanqiao fishery farm Carassius Carassius Wound infection; abscesses; septicaemia; meningitis; leech-bite infection; alligator-bite infection; acute diarrhoea 380703 Aeromonas hydrophila subsp. hydrophila ATCC 7966 canned milk from the United States NA Homo sapiens Gastroenteritis; Septicemia 382245 Aeromonas Salmonicida subsp. Salmonicida A449 brown trout with furunculosis NA Salmo trutta Furunculosis 652 Aeromonas schubertii strain WL1483 NA China: Foshan city;Guangdong Province Ophiocephalus argus Wound infection; abscesses; septicaemia; meningitis; leech-bite infection; alligator-bite infection; acute diarrhoea 646 Aeromonas sobria Anopheles stephensi; Carassius Carassius; Carassius gibelio; Ctenopharyngodon idella; Cyprinus carpio; Homo sapiens; Ictalurus punctatus; Leiocassis longirostris; Misgurnus anguillicaudatus; ompok bimaculatus; Onchorhynchus mykiss; Ovis aries; parabramis pekinensis; pelodiscus sinensis; Salmo trutta; squalius cephalus Wound infection; abscesses; septicaemia; meningitis; leech-bite infection; alligator-bite infection; acute diarrhoea 324617 Aeromonas tecta Homo sapiens Wound infection; abscesses; septicaemia; meningitis; leech-bite infection; alligator-bite infection; acute diarrhoea 654 Aeromonas veronii Homo sapiens Wound infection; abscesses; septicaemia; meningitis; leech-bite infection; alligator-bite infection; acute diarrhoea 754507 Aggregatibacter Actinomycetemcomitans ANH9381 Aggregatibacter Actinomycetemcomitans cultivated from a subgingival plaque sample of a periodontally non-diseased subject NA Homo sapiens Periodontitis 668336 Aggregatibacter Actinomycetemcomitans D11S-1 subject with aggressive periodontitis NA Homo sapiens Periodontitis 272556 Aggregatibacter Actinomycetemcomitans HK1651 Subgingival plaque of patients with aggressive periodontitis USA Homo sapiens periodontitis 1407647 Aggregatibacter Actinomycetemcomitans NUM4039 human periodontal pockets with chronic periodontitis (Mol Oral Microbiol 25(6): 200-206; 2010 Homo sapiens periodontitis 634176 Aggregatibacter aphrophilus NJ8700 An oral isolate from a healthy individual USA Homo sapiens abcesses 732 Aggregatibacter aphrophilus strain W10433 NA United Kingdom: London Homo sapiens brain abcesses 358 Agrobacterium radiobacter Homo sapiens bacteremia 739 Aggregatibacter segnis Homo sapiens; pelodiscus sinensis infections 160699 Agrobacterium larrymoorei Anthyllis vulneraria; Brassica rapa; Ficus benjamina; Homo sapiens; Oryza sativa; Phaseolus vulgaris Unknown 359 Agrobacterium rhizogenes Calliandra houstoniana; cytisus striatus; erythrophleum fordii; glycine soja; Homo sapiens; leucaena leucocephala; Phaseolus vulgaris; prunus persica; robinia pseudoacacia; vaccinium corymbosum bacteremia 358 Agrobacterium tumefaciens acacia longifolia; acacia seyal; Anthyllis vulneraria; bistorta vivipara; boehmeria nivea; Brassica rapa; bursaphelenchus mucronatus; bursaphelenchus xylophilus; caragana korshinskii; carica papaya; citrullus lanatus; crotalaria pallida; euonymus alatus; flacourtia indica; glycine max; glycine soja; gossypium hirsutum; Homo sapiens; humulus lupulus; lablab purpureus; lemna minor; lotus corniculatus; medicago lupulina; medicago polymorpha; medicago sativa; moringa oleifera; Musa acuminata; Nicotiana tabacum; Oryza sativa; paeonia ostii; panax ginseng; parthenium hysterophorus; Phaseolus vulgaris; phyla canescens; Populus alba; prosopis juliflora; prunus cerasifera; prunus cerasus; prunus dulcis; prunus persica; pyrus communis; raphanus sativus; robinia pseudoacacia; rubus idaeus; rubus ursinus; salvia miltiorrhiza; senna surattensis; Solanum lycopersicum; Solanum nigrum; sophora alopecuroides; vaccinium corymbosum; vicia cracca; vigna unguiculata; vitis vinifera Endocarditis; CAPD peritonitis; UTI; line sepsis 311402 Agrobacterium vitis S4 NA NA various plants Crown gall 153730 Agrococcus baldri Homo sapiens Unknown 32001 Alcaligenes odorans Human clinical samples various Homo sapiens septicemia; urinary tract infections 511 Alcaligenes faecalis Human clinical samples various Homo sapiens septicemia; urinary tract infections 316275 Aliivibrio salmonicida LFI1238 NA NA Salmonid fish Hitra disease 679935 Alistipes finegoldii DSM 17242 Human appendix tissue USA Homo sapiens Appendicitis; peritonitis; abdominal abscess 328813 Alistipes onderdonkii Homo sapiens Appendicitis; peritonitis; abdominal abscess 717959 Alistipes shahii WAL 8301 NA NA Homo sapiens infections 1652 Alloiococcus otitis Homo sapiens Otitis media 33032 Anaerococcus lactolyticus Human clinical samples Homo sapiens infections; abcesses 525919 Anaerococcus prevotii DSM 20548 human plasma NA Homo sapiens infections; abcesses 33036 Anaerococcus tetradius Homo sapiens infections; abcesses 156456 Anaeroglobus geminatus Homo sapiens infections 105841 Anaerostipes caccae Homo sapiens Unknown 574556 Anaplasma centrale str. Israel NA NA Homo sapiens Anaplasmosis 1412841 Anaplasma marginale str. Dawn blood NA Bos taurus Unknown 320483 Anaplasma marginale str. Florida pooled blood samples from naturally infected cattle Florida Bos taurus Anaplasmosis 1412840 Anaplasma marginale str. Gypsy Plains blood; Gypsy Plains Australia Bos taurus Unknown 234826 Anaplasma marginale str. St. Maries acutely infected cow from Northern Idaho and bears an msp1a genotype of JBB Northern Idaho Bos taurus Anaplasmosis 142058 Anaplasma Ovis Argas persicus; Bos taurus; Capra hircus; Capreolus Capreolus; Cervus elaphus; Dermacentor niveus; Haemaphysalis concinna; Haemaphysalis punctata; Homo sapiens; Ixodes ricinus; Odocoileus hemionus; Ovis aries; Ovis canadensis; rhipicephalus sanguineus Anaplasmosis 212042 Anaplasma phagocytophilum HZ patient New York USA Homo sapiens Human granulocytic anaplasmosis 1359152 Anaplasma phagocytophilum str. ApMUC09 NA Netherlands Canis lupus familiaris Anaplasmosis 1359153 Anaplasma phagocytophilum str. ApNP NA Austria Canis lupus familiaris Anaplasmosis 1359155 Anaplasma phagocytophilum str. ApWI1 NA USA Homo sapiens Anaplasmosis 1359159 Anaplasma phagocytophilum str. HGE2 NA USA Homo sapiens Anaplasmosis 1359162 Anaplasma phagocytophilum str. Webster NA USA Homo sapiens Anaplasmosis 59561 Arcanobacterium bernardiae Homo sapiens infections 28264 Arcanobacterium haemolyticum Equus caballus; Homo sapiens; Meles Meles Tonsillitis; cellulitis; lymphadenopathy; brain abscess; septicaemia; osteomyelitis 1661 Arcanobacterium pyogenes Bison bonasus; Bos taurus; Equus caballus; gazella subgutturosa; Homo sapiens; Naemorhedus goral; Odocoileus virginianus; Sus scrofa; Sus scrofa domesticus wound infection 367737 Arcobacter butzleri RM4018 human patient with gastroenteritis NA Homo sapiens Gastroenteritis; Bacteremia 28198 Arcobacter cryaerophilus Bos taurus; Homo sapiens; Sus scrofa; Sus scrofa domesticus Abdominal cramps; diarrhoea 162496 Arthrobacter creatinolyticus Culex quinquefasciatus; Homo sapiens UTI; bacteraemia; skin infection 257984 Arthrobacter mysorens Human clinical sample Homo sapiens skin infection 156980 Arthrobacter woluwensis Homo sapiens UTI; bacteraemia; skin infection 91915 Asaia bogorensis Homo sapiens; Mangifera indica; Michelia champaca; Tetraponera rufonigra peritonitis; bacteremia 415421 Asaia lannaensis Homo sapiens peritonitis; bacteremia 322098 Aster yellows witches'-broom phytoplasma AYWB NA NA plants Aster yellows phytoplasma 521095 Atopobium parvulum DSM 20469 the gingival crevices of the human oral cavity NA Homo sapiens UTI; dental abscesses; pelvic abscesses; wound infection 1383 Atopobium rimae Homo sapiens bacteremia 82135 Atopobium vaginae Homo sapiens bacterial vaginosis 370622 Aurantimonas altamirensis Human clinical samples Homo sapiens infections 1423138 Bacillus amyloliquefaciens SQR9 cucumber NA cucumber cucumber wilt disease 1458206 Bacillus amyloliquefaciens subsp. plantarum NJN6 NA NA plants plant disease 1392 Bacillus anthracis dead cow; human clinical samples USA; South Africa; Pakistan; Italy: Pollino National Park; Basilicata; Turkey: Yozgat; Argentina: Buenos Aires; China: Liaoning; Greece; Germany: Saxony-Anhalt Sus scrofa; Bos taurus; Homo sapiens; Ovis aries; Felis catus Anthrax 261594 Bacillus anthracis str. 'Ames Ancestor' NA NA Homo sapiens Anthrax 592021 Bacillus anthracis str. A0248 NA Ohio Homo sapiens Anthrax 743835 Bacillus anthracis str. A16 NA NA Homo sapiens Anthrax 673518 Bacillus anthracis str. A16R NA NA Homo sapiens Anthrax 198094 Bacillus anthracis str. Ames NA USA: Texas Bos taurus Anthrax 568206 Bacillus anthracis str. CDC 684 NA NA Homo sapiens Anthrax 768494 Bacillus anthracis str. H9401 Korean cutaneous anthrax patient Korea Homo sapiens Anthrax 1392837 Bacillus anthracis str. SVA11 the Swedish anthrax outbreak Sweden Bos taurus Anthrax 260799 Bacillus anthracis str. Sterne NA NA Homo sapiens Anthrax vaccine strain 1452727 Bacillus anthracis str. Turkey32 skin Turkey: Yozgat Homo sapiens Anthrax 189382 Bacillus aquimaris Citrus limon; Gymnanthemum amygdalinum; Homo sapiens; Musa acuminata; Takifugu oblongus Unknown 572264 Bacillus cereus 03BB102 Human blood USA: Texas: San Antonio Homo sapiens Pneumonia 1396 Bacillus cereus 03BB87 Clinical sample (blood) USA Homo sapiens Anthrax-like illness 405534 Bacillus cereus AH187 vomit NA Homo sapiens Food poisoning 405535 Bacillus cereus AH820 the periodontal pocket of a 76 year old female patient with marginal periodontitis and was further analyzed Norway: Akershus Homo sapiens Periodontitis 222523 Bacillus cereus ATCC 10987 NA Canada Homo sapiens Food poisoning 226900 Bacillus cereus ATCC 14579 NA NA Homo sapiens Food poisoning 405532 Bacillus cereus B4264 case of fatal pneumonia NA Homo sapiens Pneumonia 288681 Bacillus cereus E33L Animal; carcass of dead zebra Namibia: Etosha National Park Zebra Unknown 347495 Bacillus cereus F837/76 NA NA Homo sapiens Gastroenteritis 1217984 Bacillus cereus FRI-35 NA NA Homo sapiens Anthrax-like illness 269801 Bacillus cereus G9241 Human clinical sample USA: Louisiana Homo sapiens Anthrax-like illness 405531 Bacillus cereus G9842 stool samples from an outbreak that involved three individuals Nebraska Homo sapiens Food poisoning 637380 Bacillus cereus biovar anthracis str. CI NA NA Homo sapiens Anthrax 1397 Bacillus circulans sewage Homo sapiens sepsis 315749 Bacillus cytotoxicus NVH 391-98 NA NA Homo sapiens Food poisoning 135735 Bacillus endophyticus azadirachta indica; glossina fuscipes; Homo sapiens; kobresia capillifolia; litopenaeus vannamei; Musa acuminata; Nicotiana attenuata; Nicotiana glauca; ocimum basilicum; Phaseolus vulgaris; Zea mays Unknown 86664 Bacillus flexus Ananas comosus; Apis mellifera; Citrus limon; Culex quinquefasciatus; etroplus suratensis; hevea brasiliensis; Homo sapiens; nephelium lappaceum; panax ginseng; Populus euphratica; prosopis juliflora; ricinus communis; terminalia catappa; theobroma cacao; tradescantia spathacea; Zea mays infections 279010 Bacillus licheniformis ATCC 14580 (Prj:13082) NA NA Homo sapiens Food poisoning 279010 Bacillus licheniformis DSM 13 = ATCC 14580 NA NA Homo sapiens Food poisoning 1404 Bacillus megaterium abelmoschus esculentus; acacia auriculiformis; acacia mangium; adenanthera pavonina; aedes albopictus; agave americana; agave salmiana; allamanda cathartica; aloe vera; Ananas comosus; Apis mellifera; aplysina insularis; aquilaria sinensis; artocarpus heterophyllus; artocarpus integer; azadirachta indica; bougainvillea spectabilis; Brassica rapa; bruguiera gymnorhiza; capsicum annuum; carica papaya; carludovica palmata; caryota mitis; catharanthus roseus; centella asiatica; centrosema pubescens; cinnamomum pauciflorum; Citrus limon; Citrus maxima; cocos nucifera; cordyline fruticosa; couroupita guianensis; curcuma longa; cymbopogon citratus; cyrtostachys renda; durio zibethinus; elaeis guineensis; erythrophleum fordii; escherichia coli; Ficus deltoidea; Ficus racemosa; heliconia latispatha; hevea brasiliensis; Homo sapiens; hymenocallis littoralis; isochrysis galbana; ixora coccinea; kandelia candel; Labeo rohita; lagerstroemia speciosa; Lantana camara; leucaena leucocephala; lonicera japonica; mammillaria fraileana; Mangifera indica; manihot esculenta; manilkara zapota; mimosa bimucronata; momordica charantia; murraya koenigii; Nicotiana attenuata; Nicotiana glauca; Oryza sativa; panax ginseng; pandanus amaryllifolius; perilla frutescens; Phaseolus vulgaris; philodendron bipinnatifidum; phoenix dactylifera; phoenix roebelenii; piper nigrum; pisum sativum; plumeria obtusa; polyalthia longifolia; prunus dulcis; ricinus communis; roystonea borinquena; saccharum officinarum; sansevieria trifasciata; Solanum melongena; syzygium cumini; talipariti hamabo; tamarindus indica; Taxus globosa; Tectona grandis; theobroma cacao; tradescantia spathacea; tridax procumbens; triticum aestivum; vigna umbellata; vitis vinifera; Zea mays; zenia insignis; zootermopsis angusticollis Pneumonia; septicaemia; corneal infections; meningitis; food poisoning; eye infection; lung infection 72360 Bacillus mojavensis bistorta vivipara; gentiana macrophylla; gossypium barbadense; Homo sapiens; phoenix dactylifera; punica granatum; sophora alopecuroides; vigna mungo; Zea mays Food poisoning 1405 Bacillus mycoides Ictalurus punctatus Pneumonia; septicaemia; corneal infections; meningitis; food poisoning; eye infection; lung infection 1408 Bacillus pumilus strain GR-8 Soil China Ginger plant Ginger rhizome rot 1408 Bacillus pumilus Homo sapiens Food poisoning; wound infection; cutaneous lesions; bacteraemia; endocarditis; eye infection 1421 Bacillus sphaericus Homo sapiens bacteremia 370439 Bacillus thioparans environmental Unknown 281309 Bacillus thuringiensis serovar konkukian str. 97-27 tissue necrosis Homo sapiens sepsis 412694 Bacillus thuringiensis str. Al Hakam NA NA environmental; insects None 1428 Bacillus thuringiensis strain CTC soil China: Wuhan Invertebrate None 315730 Bacillus weihenstephanensis KBAB4 NA NA Homo sapiens Food poisoning 47678 Bacteroides caccae feces Homo sapiens commensal; sepsis; abscess or surgical infections 626929 Bacteroides clarus feces Japan Homo sapiens commensal; sepsis; abscess or surgical infections 46507 Bacteroides coagulans feces Homo sapiens commensal; sepsis; abscess or surgical infections 310298 Bacteroides coprocola feces Homo sapiens commensal; sepsis; abscess or surgical infections 823 Bacteroides distasonis feces Homo sapiens commensal; sepsis; abscess or surgical infections 357276 Bacteroides dorei stool Finland: Turku Homo sapiens commensal; sepsis; abscess or surgical infections 28111 Bacteroides eggerthii feces Homo sapiens commensal; sepsis; abscess or surgical infections 338188 Bacteroides finegoldii feces Japan Homo sapiens commensal; sepsis; abscess or surgical infections 626930 Bacteroides fluxus feces Japan Homo sapiens commensal; sepsis; abscess or surgical infections 28112 Bacteroides forsythus human oral cavity Homo sapiens periodontitis 272559 Bacteroides fragilis NCTC 9343 NA NA Homo sapiens commensal; sepsis; abscess or surgical infections 295405 Bacteroides fragilis YCH46 patient with septicemia Japan Homo sapiens commensal; sepsis; abscess or surgical infections 384639 Bacteroides galacturonicus human intestine Homo sapiens commensal; sepsis; abscess or surgical infections 28113 Bacteroides heparinolyticus periodontidis Japan Homo sapiens periodontitis 46507 Bacteroides massiliensis blood Homo sapiens commensal; sepsis; abscess or surgical infections 46503 Bacteroides merdae feces Homo sapiens commensal; sepsis; abscess or surgical infections 291645 Bacteroides nordii Human clinical samples Homo sapiens commensal; sepsis; abscess or surgical infections 626931 Bacteroides oleiciplenus feces Japan Homo sapiens commensal; sepsis; abscess or surgical infections 28116 Bacteroides ovatus strain ATCC 8483 feces USA:Woods Hole Homo sapiens commensal; sepsis; abscess or surgical infections 384638 Bacteroides pectinophilus human intestine Homo sapiens commensal; sepsis; abscess or surgical infections 310297 Bacteroides plebeius feces Homo sapiens commensal; sepsis; abscess or surgical infections 310300 Bacteroides pyogenes pig feces and abcesses Homo sapiens; Sus scrofa commensal; sepsis; abscess or surgical infections 291644 Bacteroides salyersiae Human clinical samples Homo sapiens commensal; sepsis; abscess or surgical infections 28118 Bacteroides splanchnicus crevicular spaces of canine oral cavity Canis lupus familiaris periodontitis 46506 Bacteroides stercoris feces Homo sapiens commensal; sepsis; abscess or surgical infections 310300 Bacteroides tectus pig feces and abcesses Homo sapiens; Sus scrofa commensal; sepsis; abscess or surgical infections 226186 Bacteroides thetaiotaomicron VPI-5482 the feces of a healthy adult NA Homo sapiens commensal; sepsis; abscess or surgical infections 818 Bacteroides thetaiotaomicron strain 7330 feces USA:Woods Hole Homo sapiens commensal; sepsis; abscess or surgical infections 820 Bacteroides uniformis feces Homo sapiens; mus musculus commensal; sepsis; abscess or surgical infections 827 Bacteroides ureolyticus NA Homo sapiens commensal; sepsis; abscess or surgical infections 435590 Bacteroides vulgatus ATCC 8482 NA NA Homo sapiens commensal; sepsis; abscess or surgical infections 821 Bacteroides vulgatus strain mpk healthy mouse fecal sample Germany Mus musculus commensal; sepsis; abscess or surgical infections 1094489 Bartonella australis Aust/NH1 host blood Australia Eastern grey kangaroo; Macropus giganteus Unknown 360095 Bartonella bacilliformis KC583 NA NA Homo sapiens Carrion's disease 1094491 Bartonella bovis 91-4 blood France Bos taurus Unknown 807 Bartonella elizabethae NA NA apodemus sylvaticus; Canis lupus; Canis lupus familiaris; Homo sapiens; meriones libycus; rattus norvegicus; suncus murinus endocarditis 283166 Bartonella henselae str. Houston-1 human blood Houston Texas Homo sapiens Bacillary angiomatosis; Cat scratch fever 1225179 Bartonella quintana RM-11 rhesus macaque NA Rhesus monkey; Macaca mulatta Unknown 283165 Bartonella quintana str. Toulouse human blood Toulouse France Homo sapiens Bacillary angiomatosis; Trench fever 395923 Bartonella rochalimae Human clinical sample Peru Canis lupus; Canis lupus familiaris; Homo sapiens; pulex irritans; rattus norvegicus bacteremia; fever; splenomegaly 373638 Bartonella tamiae Human clinical sample Thailand Homo sapiens bacteremia 382640 Bartonella tribocorum CIP 105476 the blood of wild rats NA Rat Bartonellosis 1094497 Bartonella vinsonii subsp. berkhoffii str. Winnie host blood USA Canis lupus familiaris Unknown 186739 Bartonella washoensis Human clinical sample NA aetheca wagneri; cediopsylla inaequalis; cynomys ludovicianus; glaucomys volans; Homo sapiens; orchopeas leucopus; oropsylla hirsuta; pulex irritans; sciurus vulgaris; spermophilus beecheyi; spermophilus columbianus; spermophilus dauricus; spermophilus richardsonii; spermophilus tridecemlineatus; tamias sibiricus; tamiasciurus hudsonicus cardiac disease; meningitis 1072685 Basilea psittacipulmonis DSM 24701 lung Switzerland: Basel Melopsittacus undulatus Unknown 1015 Bergeyella zoohelcum Human clinical samples Homo sapiens Wound infection; septicaemia; meningitis 1263829 Bibersteinia trehalosi USDA-ARS-USMARC-188 NA USA: Kansas Bos taurus bovine respiratory infections 1263831 Bibersteinia trehalosi USDA-ARS-USMARC-189 mucus USA: Nebraska Bos taurus bovine respiratory infections 1263832 Bibersteinia trehalosi USDA-ARS-USMARC-190 mucus USA: Nebraska Bos taurus bovine respiratory infections 1171377 Bibersteinia trehalosi USDA-ARS-USMARC-192 lung USA: Nebraska Bos taurus bovine respiratory infections 401473 Bifidobacterium dentium Bd1 dental caries NA Homo sapiens Dental caries 35833 Bilophila wadsworthia feces/human clinical samples California; USA Homo sapiens Appendicitis; abscesses; bacteraemia; biliary tract sepsis; mastoiditis 33035 Blautia producta feces Chicago; USA Homo sapiens septicemia 1505597 Blochmannia endosymbiont of Camponotus (Colobopsis) obliquus strain 757 ant colony in branch US: near Morehead City; North Carolina Camponotus (Colobopsis) obliquus Unknown 1505596 Blochmannia endosymbiont of Polyrhachis (Hedomyrma) turneri strain 675 ant nest on rock Australia: near Townsville Polyrhachis (Hedomyrma) turneri Unknown 360910 Bordetella avium 197N NA NA Poultry Bordetellosis 257310 Bordetella bronchiseptica RB50 rabbit NA Rabbit; Homo sapiens Respiratory tract infections 518 Bordetella bronchiseptica S798 Sus scrofa with atrophic rhinitis Japan Sus scrofa; Homo sapiens Respiratory tract infections 518 Bordetella bronchiseptica strain ATCC 10580 lung USA: Detroit; Michigan Canis lupus familiaris; Homo sapiens Respiratory tract infections 103855 Bordetella hinzii strain F582 blood USA: WA Homo sapiens bacteremia 103855 Bordetella hinzii strain H568 sputum USA: AR Homo sapiens bacteremia 1172205 Bordetella holmesii 44057 blood USA Homo sapiens bacteremia; endocarditis; respiratory disease 1247649 Bordetella holmesii ATCC 51541 blood USA Homo sapiens bacteremia; endocarditis; respiratory disease 257311 Bordetella parapertussis 12822 infected infant Germany Homo sapiens Respiratory tract infections 519 Bordetella parapertussis strain NCTC 5952 Cough plate USA: VA Homo sapiens Respiratory tract infections 520 Bordetella pertussis respiratory tract USA:NY; France; Netherlands; Sweden; Norway; Homo sapiens Respiratory tract infections 257313 Bordetella pertussis Tohama I Human clinical sample NA Homo sapiens Respiratory tract infections 94624 Bordetella petrii anaerobic bioreactor; Germany Homo sapiens Respiratory tract infections 123899 Bordetella trematum Human clinical samples Belgium Homo sapiens wounds; ulcers 411555 Borrelia afzelii K78 skin Austria Homo sapiens Lyme disease 390236 Borrelia afzelii PKo NA Europe; Asia Homo sapiens Lyme disease 1398490 Borrelia afzelii Tom3107 female Ixodes persulcatus tick Russia: Tomsk Ixodes persulcatus; Homo sapiens Lyme disease 478807 Borrelia americana ticks; birds; rodents USA Homo sapiens; Ixodes minor; Ixodes ricinus; thryothorus ludovicianus Lyme disease 42109 Borrelia andersonii NA USA amblyomma americanum; Homo sapiens; Ixodes scapularis Lyme disease 1313293 Borrelia anserina BA2 blood USA Gallus gallus Lyme disease 521010 Borrelia bissettii DN127 western blackleg Ixodes pacificus; USA: California Ixodes pacificus; Homo sapiens Lyme disease 1653832 Borrelia brasiliensis Canis lupus familiaris Lyme disease 139 Borrelia burgdorferi B31 original B31 isolate; lacking plasmids lp5 and lp56 Ixodes scapularis; Homo sapiens Lyme disease 1328311 Borrelia burgdorferi CA382 NA NA Ixodes scapularis; Homo sapiens Lyme disease 521008 Borrelia burgdorferi JD1 nymphal deer Ixodes scapularis; Ipswich Massachusetts Ixodes scapularis; Homo sapiens Lyme disease 521007 Borrelia burgdorferi N40 adult deer Ixodes dammini; New York Ixodes dammini; Homo sapiens Lyme disease 445985 Borrelia burgdorferi ZS7 NA NA Homo sapiens Lyme disease 1653833 Borrelia caucasica Homo sapiens Lyme disease 1313292 Borrelia coriaceae Co53 NA USA Ornithodoros coriaceus; Homo sapiens Lyme disease 1293575 Borrelia crocidurae DOU blood of a laboratory mouse Mali Ornithodoros sonrai; Homo sapiens Lyme disease 1155096 Borrelia crocidurae str. Achema NA NA Homo sapiens Lyme disease 412419 Borrelia duttonii Ly 2-year-old girl with tick-borne relapsing fever Tanzania Homo sapiens Lyme disease 1234596 Borrelia garinii NMJW1 tick China: Inner Mongolia Ixodes persulcatus; Homo sapiens Lyme disease 290434 Borrelia garinii PBi the cerebrospinal fluid of a patient with neuroborreliosis Germany Homo sapiens Lyme disease 1329908 Borrelia hermsii CC1 Ornithodoros hermsii tick USA: Inyo County; California Chipmunk; Homo sapiens Lyme disease 314723 Borrelia hermsii DAH Blood Washington; USA Homo sapiens Lyme disease 1313291 Borrelia hermsii MTW blood of laboratory mouse USA Ornithodoros hermsi; Homo sapiens Lyme disease 1313295 Borrelia hermsii YBT blood of laboratory mouse USA Ornithodoros hermsi; Homo sapiens Lyme disease 1293576 Borrelia hermsii YOR human blood USA Ornithodoros hermsi; Homo sapiens Lyme disease 40835 Borrelia hispanica NA NA Homo sapiens; Ornithodoros erraticus Lyme disease 34095 Borrelia japonica Ixodes ovatus Japan Homo sapiens Lyme disease 1196056 Borrelia Kurtenbachii USA Homo sapiens Lyme disease 1027767 Borrelia latyschewii Homo sapiens Lyme disease 1653837 Borrelia mazzottii Homo sapiens Lyme disease 47466 Borrelia miyamotoi CT14D4 blood Homo sapiens Lyme disease 1292392 Borrelia miyamotoi FR64b blood from a rodent; Apodemus argenteus Japan Ixodes persulcatus; Homo sapiens Lyme disease 1302858 Borrelia miyamotoi LB-2001 blood of infected SCID mice USA: CT Ixodes scapularis; Homo sapiens Lyme disease 1435045 Borrelia parkeri HR1 isolated from a burrow of Otospermophilus beecheyi USA: Carmel Valley; CA Ornithodoros parkeri; Homo sapiens Lyme disease 1313294 Borrelia parkeri SLO blood USA Ornithodoros parkeri; Homo sapiens Lyme disease 44448 Borrelia persica NA NA Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens Lyme disease 412418 Borrelia recurrentis A1 adult patient with louse-borne relapsing fever Ethiopia Homo sapiens Lyme disease 88916 Borrelia spielmanii Human clinical samples Denmark; France; Hungary Homo sapiens; Ixodes ricinus; vulpes vulpes Lyme disease 314724 Borrelia turicatae 91E135 the soft tick Ornithodoros turicatae United States Ornithodoros turicatae; Homo sapiens Lyme disease 1398491 Borrelia valaisiana Tom4006 female Ixodes persulcatus tick Russia: Tomsk Ixodes persulcatus; Homo sapiens Lyme disease 1653839 Borrelia venezuelensis Homo sapiens Lyme disease 683292 Borrelia Yangtze Homo sapiens Lyme disease 151419 Bosea massiliensis Homo sapiens Linked with ventilator-associated pneumonia 1792307 Bosea sp. PAMC 26642 NA Svalbard Stereocaulon sp. None 29522 Brachyspira aalborgi Human clinical sample Denmark Homo sapiens Intestinal spirochaetosis 565034 Brachyspira hyodysenteriae WA1 NA NA Sus scrofa Swine dysentery 526224 Brachyspira murdochii DSM 12563 Sus scrofa NA Sus scrofa Swine dysentery 759914 Brachyspira pilosicoli 95/1000 Sus scrofa NA Sus scrofa Intestinal spirochetosis 1161918 Brachyspira pilosicoli WesB Aboriginal child Australia Homo sapiens diarrhea 114615 Bradyrhizobium sp. ORS 278 Aeschynomene stem nodule NA Aeschynomene None 1393 Brevibacillus brevis NA Japan Apis mellifera; chionoecetes japonicus; Homo sapiens; theobroma cacao; vitis vinifera; zootermopsis angusticollis infections 33889 Brevibacterium casei cheese and milk UK Homo sapiens; Oreochromis niloticus; salicornia brachiata infections 479117 Brevibacterium ravenspurgense NA NA Homo sapiens Unknown 232444 Brevibacterium sanguinis Human clinical samples Belgium chionoecetes japonicus; Homo sapiens Unknown 293 Brevundimonas diminuta NA NA allium sativum; cytisus striatus; Helicoverpa armigera; Homo sapiens; phyllanthus amarus Septicaemia; endocarditis 41276 Brevundimonas vesicularis NA NA Homo sapiens; Phaseolus vulgaris Septicaemia; endocarditis 1210454 Brucella abortus 104M placenta China Bos taurus Brucellosis 1104320 Brucella abortus A13334 fetus gastric of dairy cattle Yangpyeong Korea Bos taurus Brucellosis 430066 Brucella abortus S19 NA NA Bos taurus Brucellosis 262698 Brucella abortus bv. 1 str. 9-941 NA USA:Wyoming Bos taurus Brucellosis 235 Brucella abortus strain BAB8416 blood china: baotou city of inner mongolia autonomous region Homo sapiens Brucellosis 483179 Brucella canis ATCC 23365 NA NA NA Brucellosis 1104321 Brucella canis HSK A52141 dog blood Hwaseong Korea Canis lupus familiaris Brucellosis 1408887 Brucella canis str. Oliveri infected dog Colombia: Medellin Canis lupus familiaris Brucellosis 36855 Brucella canis strain SVA13 dog Sweden Canis lupus familiaris Brucellosis 1423891 Brucella ceti TE10759-12 brain tissue Adriatic sea coasts Stenella coeruleoalba Brucellosis 1407053 Brucella ceti TE28753-12 brain Adriatic Sea Stenella coeruleoalba Brucellosis 546272 Brucella melitensis ATCC 23457 human blood and bone marrow samples NA Homo sapiens Brucellosis 703352 Brucella melitensis M5-90 NA NA Bos taurus; Homo sapiens; Ovis aries Attenuated vaccine strain 1029825 Brucella melitensis NI infected cattle Inner Mongolia; China Bos taurus Brucellosis 359391 Brucella melitensis biovar Abortus 2308 NA NA Bos taurus Brucellosis 224914 Brucella melitensis bv. 1 str. 16M infected goat NA Homo sapiens Brucellosis 29459 Brucella melitensis strain 20236 blood baotou city; Inner Mongolia Autonomous Region Homo sapiens Brucellosis 444178 Brucella ovis ATCC 25840 sheep tissue Australia Ovis aries Epididymitis; Placentitis 520461 Brucella pinnipedialis B2/94 the spleen of a common seal (Phoca vitulina) NA NA Brucellosis 981386 Brucella sp. F60 mandibular lymph nodes NA Vulpes vulpes Unknown 981387 Brucella sp. F965 mandibular lymph nodes NA Vulpes vulpes Unknown 204722 Brucella suis 1330 swine NA Sus scrofa Brucellosis 470137 Brucella suis ATCC 23445 NA NA Sus scrofa Brucellosis 645170 Brucella suis wild boar (Sus scrofa) Spain; Portugal Sus scrofa Brucellosis 29461 Brucella suis strain Human/AR/US/1981 NA USA:Arkansas Sus scrofa; Homo sapiens Brucellosis 118748 Bulleidia extructa periodontitis UK Homo sapiens Periodontitis 1265350 Buchnera aphidicola (Aphis glycines) strain BAg whole body NA Aphis glycines Unknown 372461 Buchnera aphidicola BCC cedar aphid; Cinara cedri NA Aphid; Cinara cedri Unknown 1005090 Buchnera aphidicola str. Ak (Acyrthosiphon kondoi) isofemale line of Acyrthosiphon kondoi (blue alfalfa aphid) NA Blue alfalfa aphid; Acyrthosiphon kondoi Unknown 224915 Buchnera aphidicola str. Bp (Baizongia pistaciae) aphid; Baizongia pistaciae NA Aphid; Baizongia pistaciae Unknown 1009859 Buchnera aphidicola str. F009 (Myzus persicae) NA NA Green peach aphid; Myzus persicae Unknown 1009858 Buchnera aphidicola str. G002 (Myzus persicae) NA NA Green peach aphid; Myzus persicae Unknown 198804 Buchnera aphidicola str. Sg (Schizaphis graminum) aphid; Schizaphis graminum NA Aphid; Schizaphis graminum Unknown 1009856 Buchnera aphidicola str. USDA (Myzus persicae) greenhouse tobacco USA: Ithaca; NY Green peach aphid; Myzus persicae Unknown 1005057 Buchnera aphidicola str. Ua (Uroleucon ambrosiae) isofemale line of Uroleucon ambrosiae str. UA002 (brown ambrosia aphid) NA Brown ambrosia aphid; Uroleucon ambrosiae Unknown 1009857 Buchnera aphidicola str. W106 (Myzus persicae) tobacco USA: Windsor; CT Green peach aphid; Myzus persicae Unknown 398577 Burkholderia ambifaria MC40-6 cystic fibrosis patient NA Homo sapiens Cepacia syndrome 331271 Burkholderia cenocepacia AU 1054 the blood of a patient with CF NA Homo sapiens Necrotizing pneumonia 331272 Burkholderia cenocepacia HI2424 fields that were planted with onions New York Homo sapiens Necrotizing pneumonia 216591 Burkholderia cenocepacia J2315 NA NA Homo sapiens Necrotizing pneumonia 95486 Burkholderia cenocepacia strain ST32 sputum Czech Republic Homo sapiens Necrotizing pneumonia 292 Burkholderia cepacia strain LO6 pulmonary Thailand Homo sapiens Necrotizing pneumonia 1385930 Burkholderia dolosa PC543 airway from a patient with cystic fibrosis USA Homo sapiens Necrotizing pneumonia 417203 Burkholderia endofungorum bacterial endosymbionts of the plant-pathogenic fungus Rhizopus microsporus Edwardsiella ictaluri Homo sapiens; rhizopus microsporus Necrotizing pneumonia 134537 Burkholderia fungorum environment; animals and human clinical samples Belgium Capreolus Capreolus; Homo sapiens; macroptilium atropurpureum; phanerochaete chrysosporium; prunus dulcis; suillus variegatus; Sus scrofa; vitis vinifera septic arthritis 28095 Burkholderia gladioli NA Belgium Ananas comosus; crocus sativus; dracaena reflexa; Homo sapiens; Oryza sativa; Zea mays Lung infection in cystic fibrosis 482957 Burkholderia lata strain 383 NA NA Homo sapiens; plants Necrotizing pneumonia and chronic infections 243160 Burkholderia mallei ATCC 23344 Chinese patient Burma Homo sapiens Glanders; Pneumonia 412022 Burkholderia mallei NCTC 10229 NA NA Homo sapiens Glanders; Pneumonia 320389 Burkholderia mallei NCTC 10247 NA NA Homo sapiens Glanders; Pneumonia 320388 Burkholderia mallei SAVP1 NA NA Homo sapiens Glanders; Pneumonia 13373 Burkholderia mallei human and horse clinical samples Turkey; India; China; Burma; India Homo sapiens; Equus caballus; Mule Glanders; Pneumonia 395019 Burkholderia multivorans ATCC 17616 NA NA Homo sapiens Cepacia syndrome 985079 Burkholderia multivorans ATCC BAA-247 Human Clinical Sample (Cystis Fibrosis Patient) Belgium: Brussela Homo sapiens Cepacia syndrome 441162 Burkholderia oklahomensis C6786 Pelvic Wound USA: Oklahoma Homo sapiens wound infection 884204 Burkholderia pseudomallei 1026b Septicemic melioidosis patient blood sample Thailand Homo sapiens Melioidosis 357348 Burkholderia pseudomallei 1106a NA NA Homo sapiens Melioidosis 320372 Burkholderia pseudomallei 1710b NA NA Homo sapiens Melioidosis 360118 Burkholderia pseudomallei 406e Human Thailand Homo sapiens Melioidosis 320373 Burkholderia pseudomallei 668 NA NA Homo sapiens Melioidosis 1306419 Burkholderia pseudomallei HBPUB10303a tracheal suction unknown Homo sapiens Melioidosis 272560 Burkholderia pseudomallei K96243 Human Clinical Thailand: Mahidol University (Siriraj Hospital and Mahidol-Oxford Research Unit) Homo sapiens Melioidosis 1437000 Burkholderia pseudomallei MSHR1153 clinical isolate Australia Homo sapiens Melioidosis 1249469 Burkholderia pseudomallei MSHR1328 sputum Australia Homo sapiens Melioidosis 1249471 Burkholderia pseudomallei MSHR146 right udder Australia Capra hircus Melioidosis 1435994 Burkholderia pseudomallei MSHR2243 clinical isolate Australia Homo sapiens Melioidosis 1335307 Burkholderia pseudomallei MSHR305 autopsy brain sample Australia: Northern Territory Homo sapiens Melioidosis 1435985 Burkholderia pseudomallei MSHR435 clinical isolate Australia Homo sapiens Melioidosis 1249474 Burkholderia pseudomallei MSHR511 throat Australia Capra hircus Melioidosis 1249659 Burkholderia pseudomallei MSHR520 blood Australia Homo sapiens Melioidosis 1306420 Burkholderia pseudomallei MSHR5848 sputum Australia Homo sapiens Melioidosis 1306421 Burkholderia pseudomallei MSHR5855 sputum Australia Homo sapiens Melioidosis 1306417 Burkholderia pseudomallei MSHR5858 sputum Australia Homo sapiens Melioidosis 1249475 Burkholderia pseudomallei MSHR840 Human Brain Tissue Australia: Ipswitch Homo sapiens Melioidosis 1249468 Burkholderia pseudomallei NCTC 13178 post mortem brain Australia Homo sapiens Melioidosis 1241583 Burkholderia pseudomallei NCTC 13179 skin ulcer Australia Homo sapiens Melioidosis 1249658 Burkholderia pseudomallei PB08298010 Human Clinical samples USA: Arizona Homo sapiens Melioidosis 28450 Burkholderia pseudomallei Human Clinical samples Thailand: Ubon Ratchathani; China:Hainan; Malaysia: Pahang; Australia: Darwin; Northern Territory; US; Taiwan Homo sapiens Melioidosis 412963 Burkholderia rhizoxinica bacterial endosymbionts of the plant-pathogenic fungus Rhizopus microsporus Germany Homo sapiens toxin-mediated disease 1241582 Burkholderia thailandensis 2002721723 NA NA Homo sapiens infections 1249663 Burkholderia thailandensis H0587 pleural wound USA: LA Homo sapiens infections 92647 Burkholderia tropica rhizosphere and endophytes of sugarcane; maize and teosinte plants Brazil; Mexico and South Africa acacia auriculiformis; ammophila arenaria; Ananas comosus; Homo sapiens; nypa fruticans; psidium guajava; saccharum officinarum; Solanum lycopersicum; sorghum bicolor; Zea mays necrotizing enterocolitis 269482 Burkholderia vietnamiensis G4 NA NA Homo sapiens Necrotizing pneumonia 657324 Butyrivibrio fibrisolvens 16/4 NA NA Homo sapiens infections 1358410 Campylobacter coli 15-537360 42-year old female NA Homo sapiens Endophthalmitis 1183378 Campylobacter coli RM1875 NA NA Sus scrofa Gastroenteritis; bacteraemia 1183379 Campylobacter coli RM4661 turkey carcass USA: NADC; Ames; IA Meleagris gallopavo Gastroenteritis; bacteraemia 1183380 Campylobacter coli RM5611 NA North Carolina State University Bos taurus Gastroenteritis; bacteraemia 195 Campylobacter coli strain BFR-CA-9557 heart of a broiler carcass Germany: Berlin Gallus gallus Gastroenteritis; bacteraemia 195 Campylobacter coli strain FB1 feces United Kingdom: Cambridge Homo sapiens Gastroenteritis; bacteraemia 360104 Campylobacter concisus 13826 gastrointestinal clinical isolate NA Homo sapiens Gastroenteritis 199 Campylobacter concisus strain ATCC 33237 Gingival sulcus USA Homo sapiens Gastroenteritis 360105 Campylobacter curvus 525.92 gastrointestinal clinical isolate NA Homo sapiens Gastroenteritis; Periodontitis 360106 Campylobacter fetus subsp. fetus 82-40 the blood of a human patient who was having a renal transplant NA Homo sapiens Infertility; Spontaneous abortions; Septicemia; Meningitis 1507806 Campylobacter fetus subsp. testudinum feces NA Lizard Infertility; Spontaneous abortions; Septicemia; Meningitis 1244529 Campylobacter fetus subsp. testudinum Sp3 Heterodon nasicus United Kingdom: England Homo sapiens Infertility; Spontaneous abortions; Septicemia; Meningitis 688354 Campylobacter fetus subsp. venerealis str. 84-112 NA NA Homo sapiens Venereal infection 824 Campylobacter gracilis strain ATCC 33236 oral USA Homo sapiens bacteremia 360107 Campylobacter hominis ATCC BAA-381 the feces of a healthy human NA Homo sapiens Endocarditis; meningitis 198 Campylobacter hyointestinalis stomach NA Bos taurus; Homo sapiens; Ovis aries; Sus scrofa; Sus scrofa domesticus Diarrhoea; bacteraemia; abscess 1244531 Campylobacter iguaniorum strain 2463D Iguana iguana Netherlands Common iguana; Iguana iguana; Homo sapiens infections 260714 Campylobacter insulaenigrae Marine seals; propoise UK Homo sapiens septicemia; enteritis 1338035 Campylobacter jejuni 32488 NA USA: NY Homo sapiens Gastroenteritis; bacteraemia 195099 Campylobacter jejuni RM1221 the skin of a retail Gallus gallus NA Gallus gallus Gastroenteritis; bacteraemia 197 Campylobacter jejuni strain CJ677CC002 Blood; stool Finland; United Kingdom; USA: Albany CA; South Africa: Cape Town Homo sapiens Gastroenteritis; bacteraemia 360109 Campylobacter jejuni subsp. doylei 269.97 NA NA Homo sapiens Gastroenteritis; bacteraemia 1357994 Campylobacter jejuni subsp. jejuni 00-2425 stool sample Canada Homo sapiens Gastroenteritis; bacteraemia 1380767 Campylobacter jejuni subsp. jejuni 00-2426 stool sample Canada Homo sapiens Gastroenteritis; bacteraemia 1380768 Campylobacter jejuni subsp. jejuni 00-2538 stool sample Canada Homo sapiens Gastroenteritis; bacteraemia 1383068 Campylobacter jejuni subsp. jejuni 00-2544 stool sample Canada Homo sapiens Gastroenteritis; bacteraemia 354242 Campylobacter jejuni subsp. jejuni 81-176 outbreak Minnesota USA Homo sapiens Gastroenteritis; bacteraemia 407148 Campylobacter jejuni subsp. jejuni 81116 waterborne outbreak NA Homo sapiens Gastroenteritis; bacteraemia 567106 Campylobacter jejuni subsp. jejuni IA3902 aborted placenta USA Ovis aries Gastroenteritis; bacteraemia 645464 Campylobacter jejuni subsp. jejuni M1 both the patient and from the poultry flock sampled at the abattoir; thus providing a clear-cut case of the direct transmission of disease from poultry to human NA Homo sapiens Gastroenteritis; bacteraemia 192222 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 diarrheic patient NA Homo sapiens Gastroenteritis; bacteraemia 718271 Campylobacter jejuni subsp. jejuni S3 the feces of a Gallus gallus; has been shown to be non-invasive to weakly invasive Gallus gallus Gastroenteritis; bacteraemia 32022 Campylobacter jejuni subsp. jejuni stool Canada: Quebec; Canada: Alberta; Canada: Ontario; Canada: New Brunswick; USA: Michigan; South Africa: Cape Town Homo sapiens Gastroenteritis; bacteraemia 306263 Campylobacter lari RM2100 NA NA Homo sapiens Gastroenteritis; diarrhea 203 Campylobacter rectus periodontal disease USA Homo sapiens bacteremia 204 Campylobacter showae human oral cavity Japan Homo sapiens bacteremia 206 Campylobacter sputorum NA Denmark Bos taurus; Homo sapiens bacteremia 28080 Campylobacter upsaliensis feces Sweden Canis lupus familiaris; Felis catus; Homo sapiens Diarrhoea; bacteraemia; abscess 1032069 Campylobacter ureolyticus RIGS 9880 NA Denmark Homo sapiens Gastroenteritis; diarrhea 1318743 Candidatus Bartonella ancashi strain 20.00 blood Peru: Caraz Homo sapiens Verruga peruana 1277257 Candidatus Liberibacter africanus PTSAPSY NA NA Psyllid Citrus greening disease Huanglongbing 1174529 Candidatus Liberibacter asiaticus str. gxpsy NA NA Psyllid Citrus greening disease Huanglongbing 537021 Candidatus Liberibacter asiaticus str. psy62 NA NA Psyllid Citrus greening disease Huanglongbing 1318617 Candidatus Mycoplasma girerdii VCU_M1 NA USA: Virginia Homo sapiens trichomoniasis; vaginal infection 1212765 Candidatus Mycoplasma haemolamae str. Purdue NA NA Vicugna pacos infections 1116213 Candidatus Mycoplasma haemominutum 'Birmingham 1' infected host blood NA Felis catus infections 1343076 Candidatus Sulcia muelleri str. Sulcia-ALF NA NA Macrosteles quadrilineatus Aster yellow 28188 Capnocytophaga canimorsus dog bite and cat scratch wounds USA Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens Wound infection; septicaemia; abscesses; meningitis; endocarditis; Periodontitis; septicaemia 28189 Capnocytophaga cynodegmi dog bite wound Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens Wound infection; septicaemia; abscesses; meningitis; endocarditis; Periodontitis; septicaemia 1017 Capnocytophaga gingivalis human oral cavity NA Homo sapiens Wound infection; septicaemia; abscesses; meningitis; endocarditis; Periodontitis; septicaemia 45242 Capnocytophaga granulosa human dental plaque Japan Homo sapiens Wound infection; septicaemia; abscesses; meningitis; endocarditis; Periodontitis; septicaemia 45243 Capnocytophaga haemolytica strain CCUG 32990 NA Japan: Okayama Homo sapiens Wound infection; septicaemia; abscesses; meningitis; endocarditis; Periodontitis; septicaemia 521097 Capnocytophaga ochracea DSM 7271 the human oral cavity NA Homo sapiens Wound infection; septicaemia; abscesses; meningitis; endocarditis; Periodontitis; septicaemia 1019 Capnocytophaga sputigena healthy and diseased sites in the oral cavity NA Homo sapiens Wound infection; septicaemia; abscesses; meningitis; endocarditis; Periodontitis; septicaemia 1705617 Capnocytophaga sp. oral taxon 323 strain F0383 curette USA: Boston; MA Homo sapiens periodontitis 1231626 Cardinium endosymbiont cEper1 of Encarsia pergandiella NA USA: Weslaco; Texas Encarsia pergandiella None 2718 Cardiobacterium hominis blood USA Homo sapiens Endocarditis; meningitis 194702 Cardiobacterium valvarum blood various Homo sapiens Endocarditis; meningitis 2748 Carnobacterium divergens blood; Gallus gallus meat various Homo sapiens; Onchorhynchus mykiss infections 43997 Catonella morbi human oral cavity various Homo sapiens periodontitis 158484 Cedecea davisae human clinical samples NA aloe vera; Ctenopharyngodon idella; Homo sapiens; plutella xylostella Bacteraemia 158823 Cedecea lapagei human clinical samples Homo sapiens Bacteraemia 158822 Cedecea neteri Homo sapiens Bacteraemia 1710 Cellulomonas cellulans human clinical samples Homo sapiens bacteremia 1713 Cellulomonas turbata blood Homo sapiens endocarditis and sepsis 1710 Cellulosimicrobium cellulans human clinical samples NA Dendroctonus valens; Helicoverpa armigera; Homo sapiens; paeonia ostii; vigna mungo Meningitis; pyonephrosis; CAPD peritonitis; endophthalmitis 264251 Cellulosimicrobium funkei human clinical samples NA Anas platyrhynchos; Homo sapiens Meningitis; pyonephrosis; CAPD peritonitis; endophthalmitis 82203 Centipeda periodontii human periodontal lesions USA Homo sapiens periodontitis 243161 Chlamydia muridarum Nigg NA NA Homo sapiens Pharyngitis; Bronchitis; Pneumonitis 1427370 Chlamydia pecorum DBDeUG the urogenital tract of a wide female koalas suffering from a urogenital tract infection Australia: Queensland Phascolarctos cinereus; Bos taurus; Ovis aries respiratory infections 1427368 Chlamydia pecorum IPTaLE the left conjunctiva of a wild male koala suffering from conjunctivitis Australia: Queensland Phascolarctos cinereus; Bos taurus; Ovis aries respiratory infections 1427369 Chlamydia pecorum MC/MarsBar female koala suffering from ocular and urogenital tract infections Australia: Queensland Phascolarctos cinereus; Bos taurus; Ovis aries respiratory infections 1234369 Chlamydia pecorum P787 the synovial fluid of a sheep with arthritis NA Phascolarctos cinereus; Bos taurus; Ovis aries respiratory infections 1234367 Chlamydia pecorum PV3056/3 the cervical swab of a cow with metritis NA Phascolarctos cinereus; Bos taurus; Ovis aries respiratory infections 1427371 Chlamydia pecorum VR629 synovial fluid of a sheep USA Phascolarctos cinereus; Bos taurus; Ovis aries respiratory infections 1234368 Chlamydia pecorum W73 the feces of a healthy sheep NA Phascolarctos cinereus; Bos taurus; Ovis aries respiratory infections 83558 Chlamydia pneumoniae infrarenal artery; carotd artery' coronary artery; sputum Austria:Vienna; Finland; Germany:Luebeck; Germany:Mainz;USA:Atlanta Homo sapiens respiratory infections 1221877 Chlamydia psittaci 01DC12 Sus scrofa from Saxony-Anhalt; Germany Germany: Saxony-Anhalt Sus scrofa Psittacosis 1229831 Chlamydia sp. 10DC88 spleen tissue from parrot Germany: Arnsberg; North Rhine-Westphalia Parrot; Polytelis spp. Catarrhal enteritis; Hepatosplenomegaly 813 Chlamydia trachomatis endo-cervical swab USA: Washington; Portugal:Lisbon Homo sapiens Trachoma; genital infection; neonatal infection; lymphogranuloma venereum 471472 Chlamydia trachomatis 434/Bu NA NA Homo sapiens Lymphogranuloma vernerum 1071753 Chlamydia trachomatis A/363 NA NA Homo sapiens Trachoma 1071754 Chlamydia trachomatis A/5291 NA NA Homo sapiens Trachoma 315277 Chlamydia trachomatis A/HAR-13 NA NA Homo sapiens Pharyngitis; Bronchitis; Pneumonitis 580047 Chlamydia trachomatis A2497 NA Tanzania Homo sapiens Ocular infection 1071756 Chlamydia trachomatis D/SotonD1 NA NA Homo sapiens Urethritis; Pelvic inflammatory disease; Ectopic pregnancy; Pneumonia; Conjunctivitis 1071757 Chlamydia trachomatis D/SotonD5 NA NA Homo sapiens Urethritis; Pelvic inflammatory disease; Ectopic pregnancy; Pneumonia; Conjunctivitis 1071758 Chlamydia trachomatis D/SotonD6 NA NA Homo sapiens Urethritis; Pelvic inflammatory disease; Ectopic pregnancy; Pneumonia; Conjunctivitis 272561 Chlamydia trachomatis D/UW-3/CX NA NA Homo sapiens Pharyngitis; Bronchitis; Pneumonitis 596777 Chlamydia trachomatis E/Bour NA NA Homo sapiens Urethritis; Pelvic inflammatory disease; Ectopic pregnancy; Pneumonia; Conjunctivitis 1071759 Chlamydia trachomatis E/SW3 NA NA Homo sapiens Urethritis; Pelvic inflammatory disease; Ectopic pregnancy; Pneumonia; Conjunctivitis 1071760 Chlamydia trachomatis E/SotonE4 NA NA Homo sapiens Urethritis; Pelvic inflammatory disease; Ectopic pregnancy; Pneumonia; Conjunctivitis 1071761 Chlamydia trachomatis E/SotonE8 NA NA Homo sapiens Urethritis; Pelvic inflammatory disease; Ectopic pregnancy; Pneumonia; Conjunctivitis 1071762 Chlamydia trachomatis F/SW4 NA NA Homo sapiens Urethritis; Pelvic inflammatory disease; Ectopic pregnancy; Pneumonia; Conjunctivitis 1071763 Chlamydia trachomatis F/SW5 NA NA Homo sapiens Urethritis; Pelvic inflammatory disease; Ectopic pregnancy; Pneumonia; Conjunctivitis 1071764 Chlamydia trachomatis F/SotonF3 NA NA Homo sapiens Urethritis; Pelvic inflammatory disease; Ectopic pregnancy; Pneumonia; Conjunctivitis 1071765 Chlamydia trachomatis G/SotonG1 NA NA Homo sapiens Urethritis; Pelvic inflammatory disease; Ectopic pregnancy; Pneumonia; Conjunctivitis 1260222 Chlamydia trachomatis IU824 NA NA Homo sapiens Trachoma; genital infection; neonatal infection; lymphogranuloma venereum 1260223 Chlamydia trachomatis IU888 NA NA Homo sapiens Trachoma; genital infection; neonatal infection; lymphogranuloma venereum 1071768 Chlamydia trachomatis K/SotonK1 NA NA Homo sapiens Urethritis; Pelvic inflammatory disease; Ectopic pregnancy; Pneumonia; Conjunctivitis 1071771 Chlamydia trachomatis L1/224 NA NA Homo sapiens Trachoma 1071769 Chlamydia trachomatis L1/440/LN NA NA Homo sapiens Trachoma 1071772 Chlamydia trachomatis L2/25667R NA NA Homo sapiens Trachoma 1071777 Chlamydia trachomatis L2b/795 NA NA Homo sapiens Lymphogranuloma vernerum 1071773 Chlamydia trachomatis L2b/8200/07 NA NA Homo sapiens Lymphogranuloma vernerum 1071778 Chlamydia trachomatis L2b/Ams1 NA NA Homo sapiens Lymphogranuloma vernerum 1071779 Chlamydia trachomatis L2b/Ams2 NA NA Homo sapiens Lymphogranuloma vernerum 1071780 Chlamydia trachomatis L2b/Ams3 NA NA Homo sapiens Lymphogranuloma vernerum 1071781 Chlamydia trachomatis L2b/Ams4 NA NA Homo sapiens Lymphogranuloma vernerum 1071782 Chlamydia trachomatis L2b/Ams5 NA NA Homo sapiens Lymphogranuloma vernerum 1071776 Chlamydia trachomatis L2b/CV204 NA NA Homo sapiens Lymphogranuloma vernerum 1075085 Chlamydia trachomatis L2b/Canada1 NA NA Homo sapiens Lymphogranuloma vernerum 1075086 Chlamydia trachomatis L2b/Canada2 NA NA Homo sapiens Lymphogranuloma vernerum 1071775 Chlamydia trachomatis L2b/LST NA NA Homo sapiens Lymphogranuloma vernerum 471473 Chlamydia trachomatis L2b/UCH-1/proctitis recent outbreak of proctitis Europe Homo sapiens Lymphogranuloma vernerum; Proctitis 1071774 Chlamydia trachomatis L2b/UCH-2 NA NA Homo sapiens Lymphogranuloma vernerum 887712 Chlamydia trachomatis L2c man with severe proctitis NA Homo sapiens Proctitis 1071783 Chlamydia trachomatis L3/404/LN NA NA Homo sapiens Lymphogranuloma vernerum 218497 Chlamydophila abortus S26/3 enzootic (affecting animals NA Ovis aries Pharyngitis; Bronchitis; Pneumonitis 227941 Chlamydophila caviae GPIC guinea pig with conjunctivitis NA Cavia porcellus conjunctivitis; Pharyngitis; Bronchitis; Pneumonitis 264202 Chlamydophila felis Fe/C-56 cat with conjunctivitis NA Felis catus Pharyngitis; Bronchitis; Pneumonitis 331635 Chlamydophila pecorum E58 NA NA Bos taurus; Ovis aries; Sus scrofa bacteremia 115711 Chlamydophila pneumoniae AR39 University of Washington student with acute respiratory (=AR) tract infection USA: Wyoming Homo sapiens Pharyngitis 115713 Chlamydophila pneumoniae CWL029 NA USA Homo sapiens Pharyngitis; Bronchitis; Pneumonitis 138677 Chlamydophila pneumoniae J138 the pharyngeal mucosa of a 5 year old male patient with acute bronchitis Japan Homo sapiens Pharyngitis; Bronchitis; Pneumonitis 182082 Chlamydophila pneumoniae TW-183 child's conjunctiva (the membranes lining the eyelid) during a trachoma vaccine trial Taiwan Homo sapiens Pharyngitis; Bronchitis; Pneumonitis 500464 Chlamydophila psittaci Mat116 psittacosis outbreak Japan various birds Psittacosis 243365 Chromobacterium violaceum ATCC 12472 freshwater Malaya Homo sapiens skin lesions; sepsis; liver abscesses; diarrhea; Septicemia 1324352 Chryseobacterium gallinarum strain DSM 27622 Gallus gallus Germany: Saxony-Anhalt Gallus gallus infections 246 Chryseobacterium balustinum fish skin lesions 253 Chryseobacterium indologenes Anopheles stephensi; Homo sapiens bacteremia; respiratory infection 238 Chryseobacterium meningosepticum meningitis in infants Homo sapiens meningitis 35703 Citrobacter amalonaticus strain FDAARGOS_122 Urine USA:DC Homo sapiens UTI; meningitis; bacteraemia; haemolytic-uraemic syndrome 35703 Citrobacter amalonaticus strain FDAARGOS_165 Stool USA:DC Homo sapiens UTI; meningitis; bacteraemia; haemolytic-uraemic syndrome 35703 Citrobacter amalonaticus strain FDAARGOS_166 Stool USA: DC Homo sapiens UTI; meningitis; bacteraemia; haemolytic-uraemic syndrome 57706 Citrobacter braakii Carassius auratus; Ctenopharyngodon idella; Culex quinquefasciatus; daucus carota; Homo sapiens; Onchorhynchus mykiss meningitis; sepsis; other infections 67824 Citrobacter farmeri Homo sapiens meningitis; sepsis; other infections 546 Citrobacter freundii strain CAV1321 Urine/Genitourinary; Respiratory USA:Virginia; China Homo sapiens meningitis; sepsis; other infections 67828 Citrobacter gillenii arion lusitanicus; helix pomatia; Homo sapiens; Onchorhynchus mykiss meningitis; sepsis; other infections 290338 Citrobacter koseri ATCC BAA-895 human infant NA Homo sapiens meningitis; sepsis; other infections 545 Citrobacter koseri strain FDAARGOS_86 Urine USA Homo sapiens meningitis; sepsis; other infections 637910 Citrobacter rodentium ICC168 NA NA Mus musculus Murine colonic hyperplasia 67826 Citrobacter sedlakii blood; csf Homo sapiens meningitis; sepsis; other infections 1702170 Citrobacter sp. FDAARGOS_156 Stool USA:DC Homo sapiens infection 67827 Citrobacter werkmanii Human clinical samples Homo sapiens meningitis; sepsis; other infections 133448 Citrobacter youngae Homo sapiens meningitis; sepsis; other infections 443906 Clavibacter michiganensis subsp. michiganensis NCPPB 382 NA NA plants Bacterial wilt; Bacterial canker 31964 Clavibacter michiganensis subsp. sepedonicus NA NA plants Tuber Rot; Ring Rot 508460 Cloacibacillus evryensis Homo sapiens Bacteraemia 699246 Clostridiales genomosp. BVAB3 str. UPII9-5 NA NA Homo sapiens infection 1341692 Clostridium autoethanogenum DSM 10061 Rabbit feces Belgium Oryctolagus cuniculus Unknown 1415775 Clostridium baratii str. Sullivan adult stool USA: New York Homo sapiens Wound infection; bacteraemia; abscesses 1490 Clostridium bifermentans oil mill wastewater; human clinical sample Homo sapiens Clostridial endocarditis 1491 Clostridium botulinum 111 the first case of type B infant botulism Japan Homo sapiens Botulism 441770 Clostridium botulinum A str. ATCC 19397 NA NA Homo sapiens Botulism 413999 Clostridium botulinum A str. ATCC 3502 NA NA Homo sapiens Botulism 441771 Clostridium botulinum A str. Hall NA NA Homo sapiens Botulism 536232 Clostridium botulinum A2 str. Kyoto case of infant botulism Kyoto Japan Homo sapiens Botulism 498214 Clostridium botulinum A3 str. Loch Maree duck liver paste during a botulism outbreak at a hotel United Kingdom: Scottish highlands Homo sapiens Botulism 498213 Clostridium botulinum B1 str. Okra NA NA Homo sapiens Botulism 515621 Clostridium botulinum Ba4 str. 657 infant botulism case NA Homo sapiens Botulism 1408283 Clostridium botulinum CDC_1436 infant stool USA: Utah Homo sapiens Botulism 508767 Clostridium botulinum E3 str. Alaska E43 Salmon eggs associated with a foodborne case of botulism USA: Alaska Homo sapiens Botulism 758678 Clostridium botulinum F str. 230613 NA NA Homo sapiens Botulism 441772 Clostridium botulinum F str. Langeland home-prepared liver paste Denmark Homo sapiens Botulism 1491 Clostridium botulinum home-canned Salmon Canada Homo sapiens Botulism 1492 Clostridium butyricum NA NA eisenia fetida; Homo sapiens Botulism 29354 Clostridium celerecrescens abcess NA eisenia fetida; Homo sapiens Abcesses' 46867 Clostridium chauvoei Bos taurus; Ovis aries Blackleg 1531 Clostridium clostridioforme Human clinical samples NA Homo sapiens infections 717608 Clostridium cf. saccharolyticum K10 NA NA Homo sapiens Botulism 699033 Clostridium difficile 2007855 bovine United States Bos taurus Antibiotic-associated diarrhea; Pseudomembraneous colitis 272563 Clostridium difficile 630 NA NA Bos taurus Antibiotic-associated diarrhea; Pseudomembraneous colitis 699034 Clostridium difficile BI1 human United States Homo sapiens Antibiotic-associated diarrhea; Pseudomembraneous colitis 645462 Clostridium difficile CD196 single patient with a C. difficile infection; Toxigenic Michigan; USA Homo sapiens diarrhea; pseudomembraneous colitis 699036 Clostridium difficile CF5 human Belgium Homo sapiens Antibiotic-associated diarrhea; Pseudomembraneous colitis 699035 Clostridium difficile M120 human United Kingdom Homo sapiens Antibiotic-associated diarrhea; Pseudomembraneous colitis 699037 Clostridium difficile M68 human Ireland Homo sapiens Antibiotic-associated diarrhea; Pseudomembraneous colitis 645463 Clostridium difficile R20291 NA Stoke Mandeville Hospital UK Homo sapiens Antibiotic-associated diarrhea; Pseudomembraneous colitis 1533 Clostridium fallax Human Homo sapiens sepsis; gas gangrene 89152 Clostridium hiranonis feces Japan Canis lupus; Canis lupus familiaris; Homo sapiens gastrointestinal disease 1498 Clostridium histolyticum wound infection UK Bos taurus; Homo sapiens; Sus scrofa; Sus scrofa domesticus Wound infection; bacteraemia; abscesses 89153 Clostridium hylemonae feces Japan Homo sapiens infection 1522 Clostridium innocuum human clinical samples USA Homo sapiens; mus musculus Wound infection; bacteraemia; abscesses 1542 Clostridium novyi wound infection UK Bos taurus; Equus caballus; gallus gallus; Homo sapiens; Ovis aries; Sus scrofa wound infection 1502 Clostridium perfringens NA NA Homo sapiens Food poisoning; necrotizing enterocolitis; gas gangrene 195103 Clostridium perfringens ATCC 13124 NA NA Homo sapiens Food poisoning; necrotizing enterocolitis; gas gangrene 289380 Clostridium perfringens SM101 NA NA Homo sapiens Food poisoning; necrotizing enterocolitis; gas gangrene 195102 Clostridium perfringens str. 13 the soil NA Homo sapiens Food poisoning; necrotizing enterocolitis; gas gangrene 1547 Clostridium ramosum NA NA Homo sapiens None; gut commensal 1504 Clostridium septicum NA NA Bos taurus; gallus gallus; Homo sapiens; meleagris gallopavo; Ovis aries; Sus scrofa myonecrosis 1505 Clostridium sordellii wound infection UK Bos taurus; Homo sapiens; Ovis aries malignant edema 1559 Clostridium tertium Human clinical samples Homo sapiens bacteremia; meningitis; septic arthritis; enterocolitis; spontaneous bacterial peritonitis; posttraumatic brain abscess; pneumonia 212717 Clostridium tetani E88 NA NA Homo sapiens Tetanus 58049 Colwellia sp. MT41 deep sea crustacean; Hirondellea gigas; obtained from the MariAnas Trench at a depth of 10;476 meters Pacific Ocean: the Mariana Trench Hirondellea gigas Unknown 285 Comamonas testosteroni human clinical samples NA Homo sapiens Bacteraemia; UTI; conjunctivitis; endocarditis; wound infection; abdominal abscess; peritonitis; meningitis 1528099 Corynebacteriales bacterium X1036 abscess USA: Cleveland; OH Homo sapiens abcess 1562462 Corynebacteriales bacterium X1698 peritoneal abscess USA: Cleveland; OH Homo sapiens abcess 38286 Corynebacterium afermentans human clinical samples NA Homo sapiens; pseudopterogorgia elisabethae Septicaemia; peritonitis; UTI; eye infection; wound infection; endocarditis; osteomyelitis; septic arthritis; meningitis; abscesses 43765 Corynebacterium amycolatum human skin NA Homo sapiens; Musa acuminata Septicaemia; peritonitis; UTI; eye infection; wound infection; endocarditis; osteomyelitis; septic arthritis; meningitis; abscesses 1348662 Corynebacterium argentoratense DSM 44202 throat culture NA Homo sapiens Septicaemia; peritonitis; UTI; eye infection; wound infection; endocarditis; osteomyelitis; septic arthritis; meningitis; abscesses 191610 Corynebacterium atypicum strain R2070 unknown human clinical source United Kingdom: Wales: Cardiff Homo sapiens Septicaemia; peritonitis; UTI; eye infection; wound infection; endocarditis; osteomyelitis; septic arthritis; meningitis; abscesses 548476 Corynebacterium aurimucosum ATCC 700975 the human female urogenital tract NA Homo sapiens Septicaemia; peritonitis; UTI; eye infection; wound infection; endocarditis; osteomyelitis; septic arthritis; meningitis; abscesses 36808 Corynebacterium bovis NA NA Bos taurus; Homo sapiens; mus musculus Septicaemia; peritonitis; UTI; eye infection; wound infection; endocarditis; osteomyelitis; septic arthritis; meningitis; abscesses 161896 Corynebacterium camporealensis strain DSM 44610 mammary gland Spain: Cooperativa Castellana de Ganaderos Ovis aries Mastitis 698966 Corynebacterium diphtheriae 241 NA NA Homo sapiens Diphtheria 698962 Corynebacterium diphtheriae 31A NA NA Homo sapiens Diphtheria 698973 Corynebacterium diphtheriae BH8 NA NA Homo sapiens Diphtheria 698963 Corynebacterium diphtheriae C7 (Beta) NA NA Homo sapiens Diphtheria 698965 Corynebacterium diphtheriae CDCE 8392 NA NA Homo sapiens Diphtheria 698967 Corynebacterium diphtheriae HC01 NA NA Homo sapiens Diphtheria 698968 Corynebacterium diphtheriae HC02 NA NA Homo sapiens Diphtheria 698969 Corynebacterium diphtheriae HC03 NA NA Homo sapiens Diphtheria 698970 Corynebacterium diphtheriae HC04 NA NA Homo sapiens Diphtheria 698972 Corynebacterium diphtheriae INCA 402 NA NA Homo sapiens Diphtheria 257309 Corynebacterium diphtheriae NCTC 13129 the pharyngeal membrane of a 72-year-old unimmunized UK female with clinical diphtheria acquired during a short Baltic cruise United Kingdom Homo sapiens Diphtheria 698964 Corynebacterium diphtheriae PW8 NA NA Homo sapiens Diphtheria 698971 Corynebacterium diphtheriae VA01 NA NA Homo sapiens Diphtheria 61592 Corynebacterium durum human respiratory tract specimens France Homo sapiens Septicaemia; peritonitis; UTI; eye infection; wound infection; endocarditis; osteomyelitis; septic arthritis; meningitis; abscesses 1050174 Corynebacterium epidermidicanis strain DSM 45586 skin NA Canis lupus familiaris Unknown 1451189 Corynebacterium falsenii DSM 44353 blood NA Homo sapiens Septicaemia; peritonitis; UTI; eye infection; wound infection; endocarditis; osteomyelitis; septic arthritis; meningitis; abscesses 556548 Corynebacterium freiburgense dog bite wound Germany Homo sapiens infection 1718 Corynebacterium glutamicum strain USDA-ARS-USMARC-56828 nasopharynx USA:Tennessee Bos taurus Unknown 156978 Corynebacterium imitans strain DSM 44264 patients with suspected diphtheria Poland: regional hospital of Przemysl Homo sapiens infection 306537 Corynebacterium jeikeium K411 the axilla of a bone marrow transplant patient NA Homo sapiens Nosocomial infections 645127 Corynebacterium kroppenstedtii DSM 44385 human sputum NA Homo sapiens infection 35755 Corynebacterium kutscheri strain DSM 20755 lung NA Mus musculus Lung abscess 38290 Corynebacterium macginleyi human clinical samples France Homo sapiens infection 1224163 Corynebacterium maris DSM 45190 coral mucus NA Coral; Fungia granulosa Unknown 441501 Corynebacterium massiliense human clinical samples France Homo sapiens Endocarditis; wound infection 161890 Corynebacterium mastitidis sheep milk Spain Homo sapiens mastitidis 43768 Corynebacterium matruchotii NA NA Homo sapiens infection 38301 Corynebacterium minutissimum blood Homo sapiens cellulitis and bacteremia 571915 Corynebacterium mustelae strain DSM 45274 necropsy lung; liver and kidney tissue NA Mustela putorius furo Unknown 43769 Corynebacterium propinquum human clinical samples NA Homo sapiens infection 37637 Corynebacterium pseudodiphthericum Human clinical samples Homo sapiens infections 679896 Corynebacterium pseudotuberculosis 1002 goat caseous granulomas Bahia Capra hircus Caseous lymphadenitis 1168865 Corynebacterium pseudotuberculosis 258 NA NA NA Caseous lymphadenitis 1089446 Corynebacterium pseudotuberculosis 267 NA USA: northern California Lama glama Caseous lymphadenitis 1087452 Corynebacterium pseudotuberculosis 3/99-5 case of naturally-occurring Caseous Lymphadenitis (CLA) Scottish Borders Ovis aries Caseous lymphadenitis 1087451 Corynebacterium pseudotuberculosis 31 NA NA NA Caseous lymphadenitis 1087453 Corynebacterium pseudotuberculosis 42/02-A NA Perth; Australia Ovis aries Caseous lymphadenitis 681645 Corynebacterium pseudotuberculosis C231 NA NA NA Caseous lymphadenitis 935697 Corynebacterium pseudotuberculosis CIP 52.97 lymphangitis from a horse NA Equus caballus Caseous lymphadenitis 1161911 Corynebacterium pseudotuberculosis Cp162 NA NA NA Caseous lymphadenitis 889513 Corynebacterium pseudotuberculosis I19 abscess of mastitis from a bovine Israel Bos taurus Caseous lymphadenitis 935298 Corynebacterium pseudotuberculosis PAT10 the abscess of lung from a sheep NA Ovis aries Caseous lymphadenitis 1719 Corynebacterium pseudotuberculosis abcesses Brazil:Bahia; Brazil: Petrolina;PE; USA: C; Belgium; Israel; Chile; Egypt; Mexico: Guanajuato; Equatorial Guinea: Mongomo; Brazil: Para; Portugal; Brazil: Juazeiro; Bahia State Capra hircus; Ovis aries; Bos taurus; Homo sapiens; Equus caballus Caseous Lymphadenitis 598660 Corynebacterium pyruviciproducens human groin abscess USA: Southern California Homo sapiens infection 156976 Corynebacterium riegelii strain PUDD_83A45 urine USA: San Francisco Homo sapiens infection 146827 Corynebacterium simulans human clinical samples Belgium Homo sapiens infection 161899 Corynebacterium singulare IBS B52218 semen France: Institute of Bacteriology of Strasbourg Homo sapiens Unknown 1705 Corynebacterium stationis NA NA Homo sapiens Unknown 43770 Corynebacterium striatum human respiratory tract specimens Spain Homo sapiens infection 136857 Corynebacterium testudinoris strain DSM 44614 necrotic lesions in the mouth NA Testudinidae infection 38304 Corynebacterium tuberculostearicum clinical and food samples France Homo sapiens infection 65058 Corynebacterium ulcerans 05146 human NA Homo sapiens Diphtheria-like disease; pharyngitis 65058 Corynebacterium ulcerans 210931 NA NA Homo sapiens Diphtheria-like disease; pharyngitis 65058 Corynebacterium ulcerans 210932 human NA Homo sapiens Diphtheria-like disease; pharyngitis 1408268 Corynebacterium ulcerans FRC58 bronchitis secretion from patient in hospital France: Troyes Homo sapiens Pharyngitis; pneumonia; granulomatous pulmonary nodules; skin ulcers and diphtheria 65058 Corynebacterium ulcerans strain 131001 human NA Homo sapiens Diphtheria-like disease; pharyngitis 65058 Corynebacterium ulcerans strain 131002 human NA Homo sapiens Diphtheria-like disease; pharyngitis 504474 Corynebacterium urealyticum DSM 7109 case of cystitis NA Homo sapiens Urinary tract infection 1267754 Corynebacterium urealyticum DSM 7111 ectopic kidney of a 9-year-old patient Germany Homo sapiens Urinary tract infection 401472 Corynebacterium ureicelerivorans strain IMMIB RIV-2301 blood culture Germany: Bonn Homo sapiens Septicemia 1072256 Corynebacterium uterequi strain DSM 45634 uterus of a maiden mare Sweden: Henan Equus caballus Unknown 1224164 Corynebacterium vitaeruminis DSM 20294 cow rumen NA Bos taurus Unknown 1725 Corynebacterium xerosis human clinical samples various Homo sapiens; Sus scrofa bacteremia; skin infections; pneumonia 434923 Coxiella burnetii CbuG_Q212 case of endocarditis and does not carry a plasmid NA Homo sapiens Q fever 434924 Coxiella burnetii CbuK_Q154 patient with endocarditis and contains the plasmid QpRS NA Homo sapiens Q fever 434922 Coxiella burnetii Dugway 5J108-111 Blood USA: Utah Chisel-toothed kangaroo rat; Dipodomys microps Q fever 360115 Coxiella burnetii RSA 331 the blood of an infected patient northern Italy Homo sapiens Q fever 227377 Coxiella burnetii RSA 493 NA NA Homo sapiens Q fever 1321945 Coxiella burnetii str. Namibia NA Namibia: Windhoek Capra hircus Q fever 1592897 Coxiella-like endosymbiont strain CRt NA Israel: kibutz Hulda Rhipicephalus turanicus Unknown 413503 Cronobacter malonaticus clinical and food samples various Homo sapiens infections 290339 Cronobacter sakazakii ATCC BAA-894 NA NA Homo sapiens Meningitis; Oepticemia; Necrotizing Enterocolitis 28141 Cronobacter sakazakii strain ATCC 29544 primary hospital lab USA:Tennessee Homo sapiens necrotizing Enterocolitis; bacteraemia; meningitis; brain abscess/lesions 413502 Cronobacter turicensis clinical and food samples various Homo sapiens infections 68895 Cupriavidus basilensis NA NA Homo sapiens infections 164546 Cupriavidus taiwanensis sputum of a cystic fibrosis patient Taiwan Homo sapiens; mimosa diplotricha; mimosa Sus scrofara; mimosa pudica; paeonia ostii Meningitis; pulmonary infection in cystic fibrosis; line sepsis 469378 Cryptobacterium curtum DSM 15641 periodontal pocket of an adult human with periodontal disease Homo sapiens Dental caries; Peridontitis 80866 Delftia acidovorans human clinical samples Anguilla Anguilla; bactrocera tau; Brassica napus; Homo sapiens; saccharum officinarum; sphagnum magellanicum endocarditis 180282 Delftia tsuruhatensis human clinical samples acropora digitifera; Brassica napus; Homo sapiens; Oreochromis niloticus; Phaseolus vulgaris bacteremia 1863 Dermatophilus congolensis Homo sapiens infections 500615 Desmospora activa sputum Germany: Bonn Homo sapiens Unknown 525897 Desulfomicrobium baculatum DSM 4028 manganese ore NA Homo sapiens periodontitis 888061 Desulfomicrobium orale DSM 12838 NA Netherlands Homo sapiens periodontitis 485916 Desulfotomaculum acetoxidans DSM 771 Sus scrofa waste NA Sus scrofa Unknown 525146 Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 the rumen of a sheep NA Ovis aries Bacteraemia; liver abscess 44742 Desulfovibrio fairfieldensis strain CCUG 45958 NA Australia Homo sapiens Inflammatory bowel disease 901 Desulfovibrio piger Homo sapiens Inflammatory bowel disease 218538 Dialister invisus human oral cavity UK Homo sapiens Periodontitis; endodontic infection; bacteraemia 309120 Dialister micraerophilus human clinical samples France Homo sapiens Periodontitis; endodontic infection; bacteraemia 39950 Dialister pneumosintes Homo sapiens Periodontitis; endodontic infection; bacteraemia 487173 Dialister succinatiphilus feces Japan Homo sapiens Gastroenteritis 870 Dichelobacter nodosus Bos taurus; Ovis aries Foot rot 246195 Dichelobacter nodosus VCS1703A NA NA Bos taurus; Ovis aries Ovine foot rot 590409 Dickeya dadantii Ech586 NA NA plants Soft rot 579405 Dickeya dadantii Ech703 NA NA plants Soft rot 561229 Dickeya zeae Ech1591 NA NA plants Soft rot 161920 Dietzia natronolimnaea human clinical isolates; moderately saline and alkaline soda lake East Africa Brassica rapa; Homo sapiens infections 499555 Dietzia timorensis soil West Timor; Indonesia Homo sapiens infections 323415 Dokdonella koreensis soil island; Dokdo; in the East Sea in Korea Homo sapiens bacteremia 29394 Dolosigranulum pigrum human clinical samples UK Homo sapiens eye infections 93378 Edwardsiella hoshinae Homo sapiens Wound infection; abscesses; gastroenteritis 634503 Edwardsiella ictaluri 93-146 NA NA Ictalurus punctatus Wound infection; abscesses; gastroenteritis 1650654 Edwardsiella sp. LADL05-105 tilapia USA Oreochromis sp. Unknown 498217 Edwardsiella tarda EIB202 NA NA fish; reptiles; birds; Homo Sapiens Wound infection; abscesses; gastroenteritis 718251 Edwardsiella tarda FL6-60 NA NA fish; reptiles; birds; Homo Sapiens Wound infection; abscesses; gastroenteritis 636 Edwardsiella tarda strain FL95-01 fish; reptiles; amphibians; mammals; including humans USA Ictalurus punctatus Unknown 479437 Eggerthella lenta DSM 2243 cases of bacteremia NA Homo sapiens Bacteremia 269484 Ehrlichia Canis str. Jake 2-year-old male dog North Carolina; USA Canis lupus familiaris Ehrlichiosis 205920 Ehrlichia chaffeensis str. Arkansas patient USA: Arkansas Homo sapiens Human monocytic ehrlichiosis 1249651 Ehrlichia chaffeensis str. Heartland NA USA Homo sapiens Ehrlichiosis 1249652 Ehrlichia chaffeensis str. Jax NA USA Homo sapiens Ehrlichiosis 1249653 Ehrlichia chaffeensis str. Liberty NA USA Homo sapiens Ehrlichiosis 1249654 Ehrlichia chaffeensis str. Osceola NA USA Homo sapiens Ehrlichiosis 1249655 Ehrlichia chaffeensis str. Saint Vincent NA USA Homo sapiens Ehrlichiosis 1249656 Ehrlichia chaffeensis str. Wakulla NA USA Homo sapiens Ehrlichiosis 1249650 Ehrlichia chaffeensis str. West Paces blood USA Homo sapiens Ehrlichiosis 948 Ehrlichia equi human clinical samples Homo sapiens Ehrlichiosis 947 Ehrlichia ewingii dog blood USA amblyomma americanum; Canis lupus; Canis lupus familiaris; didelphis albiventris; Homo sapiens; rhipicephalus sanguineus Ehrlichiosis 1423892 Ehrlichia muris AS145 spleen of wild mouse Japan: Asuke Town; Aichi Prefecture Mus musculus Ehrlichiosis 948 Ehrlichia phagocytophila human clinical samples Homo sapiens Ehrlichiosis 302409 Ehrlichia ruminantium str. Gardel the Caribbean island of Guadeloupe NA tick Ehrlichiosis 254945 Ehrlichia ruminantium str. Welgevonden infected tick NA Amblyomma hebraeum Ehrlichiosis 951 Ehrlichia sennetsu Homo sapiens Sennetsu fever 391036 Ehrlichia sp. HF NA Japan Tick; Ixodes ovatus Unknown 539 Eikenella corrodens Canis lupus familiaris; Felis catus; Homo sapiens Septicaemia; endocarditis; abscesses; septic arthritis 238 Elizabethkingia meningoseptica Anopheles gambiae; Anopheles stephensi; Culex quinquefasciatus; Homo sapiens; rana catesbeiana Meningitis; bacteraemia; endocarditis; necrotizing fasciitis; pneumonia 722877 Elizabethkingia sp. BM10 hindgut South Korea: Seoul Reticulitermes speratus Unknown 935296 Enterobacter aerogenes EA1509E blood culture France:Marseille Homo sapiens Bacteraemia; respiratory tract infections; UTI 548 Enterobacter aerogenes strain CAV1320 Perirectal USA:Virginia Homo sapiens Bacteraemia; respiratory tract infections; UTI 548 Enterobacter aerogenes strain FDAARGOS_152 Urine USA:DC Homo sapiens Bacteraemia; respiratory tract infections; UTI 61646 Enterobacter amnigenus Beta vulgaris; Canis lupus; Canis lupus familiaris; Ctenopharyngodon idella; daucus carota; eutrema wasabi; helix pomatia; Homo sapiens; medicago sativa; Musca domestica; Nicotiana attenuata; pleurotus eryngii; rutilus rutilus; Solanum tuberosum; vicia faba; vitis vinifera Bacteraemia; respiratory tract infections; UTI 61645 Enterobacter asburiae human clinical samples USA Homo sapiens Bacteraemia; respiratory tract infections; UTI 69218 Enterobacter cancerogenus blood and spinal fluid Beta vulgaris; Culex quinquefasciatus; Homo sapiens; hylocereus undatus; medicago sativa; Musca domestica Bacteraemia; respiratory tract infections; UTI 550 Enterobacter cloacae Excreted bodily substance USA Homo sapiens Bacteraemia; respiratory tract infections; UTI 1333850 Enterobacter cloacae ECNIH2 sink drain USA Homo sapiens Bacteraemia; respiratory tract infections; UTI 1333851 Enterobacter cloacae ECNIH3 tracheal aspirate USA Homo sapiens Bacteraemia; respiratory tract infections; UTI 1333849 Enterobacter cloacae ECR091 urine USA Homo sapiens Bacteraemia; respiratory tract infections; UTI 718254 Enterobacter cloacae subsp. cloacae NCTC 9394 NA NA Homo sapiens Bacteraemia; respiratory tract infections; UTI 61647 Enterobacter gergoviae Homo sapiens Bacteraemia; respiratory tract infections; UTI 158836 Enterobacter hormaechei blood; wounds; sputum Ananas comosus; Anopheles stephensi; Anthyllis vulneraria; clitoria ternatea; elaeis guineensis; Homo sapiens; Oreochromis niloticus; Oryza sativa; Phaseolus vulgaris; phenacoccus solenopsis; sansevieria trifasciata; Tectona grandis; Zea mays Bacteraemia; respiratory tract infections; UTI 208224 Enterobacter kobei Germany Homo sapiens Bacteraemia; respiratory tract infections; UTI 299767 Enterobacter ludwigii human clinical samples Germany aedes albopictus; arachis hypogaea; bougainvillea spectabilis; Brassica napus; bursaphelenchus xylophilus; Culex quinquefasciatus; Homo sapiens; hymenocallis littoralis; lolium multiflorum; thanatephorus cucumeris; vitis vinifera; Zea mays Bacteraemia; respiratory tract infections; UTI 28141 Enterobacter sakazakii human clinical samples Homo sapiens Bacteraemia; respiratory tract infections; UTI 1686396 Enterobacter sp. BIDMC93 NA NA Homo sapiens infections 1686392 Enterobacter sp. MGH120 NA NA Homo sapiens infections 33945 Enterococcus avium daucus carota; gallus gallus; Homo sapiens; Sus scrofa bacteremia 565655 Enterococcus casseliflavus EC20 NA NA Homo sapiens Opportunistic infections 1287066 Enterococcus faecalis DENG1 sputum NA Homo sapiens Bacteraemia; abscesses; endocarditis; meningitis; UTI; peritonitis; osteomyelitis; wound infection 226185 Enterococcus faecalis V583 blood culture derived from a chronically-infected patient St. Louis; Missouri Homo sapiens Bacteremia; Endocarditis; Urinary tract infection 1155766 Enterococcus faecium Aus0004 the bloodstream of a patient Australia: Melbourne Homo sapiens Bacteremia; Endocarditis; Urinary tract infection 1305849 Enterococcus faecium Aus0085 the bloodstream of a patient Australia: Melbourne Homo sapiens Bacteremia; Endocarditis; Urinary tract infection 1352 Enterococcus faecium strain 64/3 NA Germany Homo sapiens Bacteremia; Endocarditis; Urinary tract infection 1352 Enterococcus faecium strain 6E6 feces USA Homo sapiens Bacteremia; Endocarditis; Urinary tract infection 37734 Enterococcus flavescens human clinical samples Homo sapiens Bacteremia; Endocarditis; Urinary tract infection 1353 Enterococcus gallinarum strain FDAARGOS_163 Elbow swab USA:DC Homo sapiens Bacteremia; Endocarditis; Urinary tract infection 160453 Enterococcus gilvus bile Canada Homo sapiens cholecystitis 237615 Enterococcus hawaiiensis human clinical samples Homo sapiens Bacteremia; Endocarditis; Urinary tract infection 1354 Enterococcus hirae Sus scrofas and Gallus galluss Anas platyrhynchos; Bos taurus; Canis lupus; Canis lupus familiaris; Culex quinquefasciatus; gallus gallus; Homo sapiens; lutjanus guttatus; Moschus berezovskii; pelodiscus sinensis; Sus scrofa Bacteremia; Endocarditis; Urinary tract infection 246144 Enterococcus italicus human clinical samples; artisanal Italian cheese Homo sapiens Bacteremia; Endocarditis; Urinary tract infection 53346 Enterococcus mundtii Brassica rapa; choristoneura fumiferana; Homo sapiens; lymantria dispar; Sus scrofa; Ulva rigida; Zea mays Bacteremia; Endocarditis; Urinary tract infection 160454 Enterococcus pallens peritoneal dialysate Canada Homo sapiens peritonitis 71452 Enterococcus raffinosus camelus dromedarius; helix pomatia; Homo sapiens Bacteremia; Endocarditis; Urinary tract infection 417368 Enterococcus sanguinicola blood USA and Sweden Homo sapiens Bacteremia; Endocarditis; Urinary tract infection 417368 Enterococcus thailandicus blood; fermented sausage USA; Sweden; Thailand Homo sapiens Bacteremia; Endocarditis; Urinary tract infection 657310 Enterococcus sp. 7L76 human intestine NA Homo sapiens Bacteremia; Endocarditis; Urinary tract infection 1316414 Enterococcus sp. HSIEG1 ileostomy effluent evening sample obtained from a 79 year-old male ileostomist plated on Veillonella selective agar The netherlands Homo sapiens Bacteremia; Endocarditis; Urinary tract infection 716540 Erwinia amylovora ATCC 49946 NA NA plants Fire blight disease 665029 Erwinia amylovora CFBP1430 NA NA plants Fire blight disease 215689 Erwinia sp. Ejp617 NA NA plants Bacterial blight 650150 Erysipelothrix rhusiopathiae str. Fujisawa soil; food scraps and water contaminated by infected animals NA Homo sapiens Urticaria-like lesions; arthralgia; arthritis; endocarditis; sepsis 1440052 Escherichia albertii KF1 5 Bangladeshi children with diarrhea Bangladesh Homo sapiens diarrhea 216592 Escherichia coli 042 NA NA Homo sapiens diarrhea 745156 Escherichia coli 1303 udder acute mastitis NA Bos taurus mastitis 362663 Escherichia coli 536 patient with acute pyelonephritis (inflammation of the kidney and pelvis) Homo sapiens Urinary tract infection 585055 Escherichia coli 55989 clinical Enteroaggregative isolate NA Homo sapiens Gastroenteritis 655817 Escherichia coli ABU 83972 NA NA Homo sapiens Asymptomatic bacteriuria 1329907 Escherichia coli APEC IMT5155 the internal organs of a laying hen with clinical symptoms of septicemia Gallus gallus septicemia 405955 Escherichia coli APEC O1 NA NA Gallus gallus Colibacillosis 1274814 Escherichia coli APEC O78 the lung of a turkey clinically diagnosed with colibacillosis NA Turkey; Meleagris gallopavo Colibacillosis 199310 Escherichia coli CFT073 NA USA: Maryland Homo sapiens Urinary tract infection 331111 Escherichia coli E24377A NA NA Homo sapiens diarrhea 758831 Escherichia coli ECC-1470 udder USA: New York State Bos taurus mastitis 562 Escherichia coli ECONIH1 perirectal swab USA Homo sapiens Gastroenteritis 585397 Escherichia coli ED1a NA NA Homo sapiens Gastroenteritis 316401 Escherichia coli ETEC H10407 NA NA Homo sapiens diarrhea 1412834 Escherichia coli FAP1 Sus scrofa (faeces) Netherlands Sus scrofa Unknown 585057 Escherichia coli IAI39 NA NA Homo sapiens Urinary tract infection 714962 Escherichia coli IHE3034 NA Finland Homo sapiens Meningitis 1355100 Escherichia coli JJ1886 Patient USA Homo sapiens Urosepsis 591946 Escherichia coli LF82 patient with Crohn's disease NA Homo sapiens Enterocolitis 1133852 Escherichia coli O104:H4 str. 2011C-3493 NA NA Homo sapiens Hemolytic uremic syndrome (HUS) 1048254 Escherichia coli O104:H4 str. C227-11 stool sample from a 64-year-old woman from Hamburg who presented with bloody diarrhea and did not develop hemolytic uremic syndrome (HUS) Denmark Homo sapiens Hemolytic uremic syndrome (HUS) 83334 Escherichia coli O157:H7 Homo sapiens Enterohemorrhagic disease 1735 Eubacterium biforme Homo sapiens Opportunistic infections 35517 Eubacterium brachy human oral cavity Homo sapiens periodontitis 39481 Eubacterium combesii Homo sapiens bacteremia 39482 Eubacterium contortum Homo sapiens bacteremia 39483 Eubacterium cylindroides Homo sapiens Wounds; abscesses; septicaemia; periodontitis 717960 Eubacterium cylindroides T2-87 NA NA Homo sapiens Wounds; abscesses; septicaemia; periodontitis 56774 Eubacterium infirmum Canis lupus; Canis lupus familiaris; Homo sapiens periodontitis 1736 Eubacterium limosum feces Homo sapiens bacteremia; abcesses 76124 Eubacterium minutum periodontal pockets Homo sapiens periodontitis 39489 Eubacterium moniliforme Homo sapiens bacteremia; abcesses 83339 Eubacterium multiforme Homo sapiens periodontitis 35518 Eubacterium nodatum human oral cavity USA:Virginia Canis lupus; Canis lupus familiaris; Homo sapiens periodontitis 39491 Eubacterium rectale Homo sapiens periodontitis 467210 Eubacterium saburreum Homo sapiens periodontitis 51123 Eubacterium saphenum periodontal pockets Homo sapiens periodontitis 143393 Eubacterium sulci gingival sulcus USA:Virginia Homo sapiens gingivitis; periodontitis 1737 Eubacterium tenue Homo sapiens bacteremia 35519 Eubacterium timidum human oral cavity Homo sapiens periodontitis 39498 Eubacterium yurii subgingival dental plaque Homo sapiens periodontitis 41202 Ewingella americana human clinical samples USA agaricus bisporus; bursaphelenchus mucronatus; bursaphelenchus xylophilus; Homo sapiens; lyophyllum decastes; pleurotus ostreatus; sialia sialis peritonitis; conjunctivitis; bacteremia; pneumonia 143361 Filifactor alocis gingival sulcus USA:Virginia Homo sapiens gingivitis; periodontitis 1260 Finegoldia magna wrist wound USA Homo sapiens septic arthritis 428988 Flavobacterium lindanitolerans ascites fluid; hexachlorocyclohexane-contaminated soil Ummari village; India Homo sapiens sepsis 463 Fluoribacter dumoffii human clinical sample USA: New York Homo sapiens pneumonia 464 Fluoribacter gormanii human clinical sample Homo sapiens pneumonia 28110 Francisella philomiragia muskrats; water; human clinical samples USA Homo sapiens; Mus musculus pneumonia; bacteremia 264 Francisella novicida environmental; human clinical samples USA Homo sapiens pneumonia; bacteremia 263 Francisella tularensis animals and human clinical samples USA; Europe; Sweden amblyomma americanum; Bos taurus; calidris minuta; callithrix jacchus; Canis lupus familiaris; cercopithecus diana; Dermacentor marginatus; Dermacentor reticulatus; Dermacentor variabilis; Felis catus; Haemaphysalis concinna; Homo sapiens; hyalomma lusitanicum; Ixodes ricinus; lepus europaeus; mus musculus; Ovis aries; Procambarus clarkii; rhipicephalus sanguineus; Sus scrofa; sylvilagus floridanus pneumonia; bacteremia 849 Fusobacterium gonidiaformans abcess Homo sapiens infections; abcesses; Fournier's gangrene 850 Fusobacterium mortiferum blood Homo sapiens sepsis 77917 Fusobacterium naviforme Homo sapiens infections 859 Fusobacterium necrophorum Bos taurus; Canis lupus familiaris; Capra hircus; Equus caballus; Homo sapiens; Ovis aries; rangifer tarandus; Sus scrofa; Sus scrofa domesticus Lemierre's syndrome (postanginal sepsis); tonsillitis; septic thrombophlebitis; septicemia 851 Fusobacterium nucleatum human oral cavity Canis lupus familiaris; Homo sapiens periodontitis 860 Fusobacterium periodonticum human oral cavity Homo sapiens periodontitis 861 Fusobacterium ulcerans tropical ulcers Gambia; Papua New Guinea; Zambia; southern India; Homo sapiens tropical ulcers 856 Fusobacterium varium Homo sapiens ulcerative colitis 2702 Gardnerella vaginalis human clinical samples Homo sapiens Bacterial Vaginosis  1379 Gemella haemolysans brain abcess Homo sapiens periodontitis; abcesses 29391 Gemella morbillorum feces Homo sapiens Bacteraemia; endocarditis 84135 Gemella sanguinis human clinical samples Homo sapiens Bacteraemia; endocarditis 257984 Glutamicibacter mysorens Human clinical sample Homo sapiens skin infection 36820 Gordonia aichiensis human clinical sample Homo sapiens bacteremia 263909 Gordonia araii sputum; human clinical samples Japan Homo sapiens infections 2054 Gordonia bronchialis sputum; blood Homo sapiens bacteremia 263908 Gordonia effusa sputum; human clinical samples Japan Homo sapiens infections 249058 Gordonia otititis blood Homo sapiens bacteremia 84595 Gordonia polyisoprenivorans automobile tire; blood Homo sapiens bacteremia 36822 Gordonia rubropertincta human clinical sample Homo sapiens lung infection 36823 Gordonia sputi sputa and soil Homo sapiens Pulmonary infection; cholecystitis; breast abscess; sternal wound sepsis; brain abscess; bacteraemia; otitis 2055 Gordonia terrae soli; sputum Homo sapiens bacteremia 46124 Granulicatella adiacens Homo sapiens Endocarditis; septic arthritis; endodontic infection 137732 Granulicatella elegans human clinical sample Homo sapiens endocarditis 673 Grimontia hollisae stool Homo sapiens diarrhea 228924 Guggenheimella bovis bovine hoof lesions Switzerland Homo sapiens; Bos taurus bovine dermatitis digitalis 714 Haemophilus actinomycetemcomitans human oral cavity Homo sapiens periodontitis 197575 Haemophilus aegyptius blood or hemorrhagic cerebrospinal fluid Brazil Homo sapiens purpuric fever 732 Haemophilus aphrophilus human clinical samples Homo sapiens endocarditis; osteomyelitis; discitis; epidural abscess; spondylodiscitis; septic arthritis and prevertebral infections 730 Haemophilus ducreyi human clinical samples Homo sapiens chancroid 726 Haemophilus haemolyticus human clinical samples Homo sapiens bacteremia; periodontitis; pneumonia; sepsis 727 Haemophilus influenzae human clinical sample Homo sapiens bacteremia; pneumonia; epiglottitis; meningitis; cellulitis; osteomyelitis; infectious arthritis. 735 Haemophilus parahaemolyticus Human clinical sample France: Paris Homo sapiens pneumonia; septic shock 729 Haemophilus parainfluenzae human clinical samples Homo sapiens endocarditis; meningitis; bacteremia  732 Haemophilus paraphrophilus human clinical samples Homo sapiens; Bos taurus endocarditis 738 Haemophilus parasuis strain SH03 lung China Homo sapiens infections 739 Haemophilus segnis human clinical samples Homo sapiens bacteremia; endocarditis 569 Hafnia alvei human clinical samples costelytra Zealandica; Homo sapiens; Salmo trutta; sphagnum fallax; sphagnum magellanicum; thorectes lusitanicus gastroenteritis; meningitis; bacteremia; abcesses; pneumonia; nosocomial wound infections; endophthalmitis 213 Helicobacter cinaedi blood Homo sapiens; macaca mulatta enteric disease 215 Helicobacter fennelliae homosexual men proctitis; proctocolitis;/or enteritis. USA:Seattle Homo sapiens enteric disease 35817 Helicobacter heilmannii human clinical samples acinonyx jubatus; Felis catus; Homo sapiens; lynx rufus; macaca fascicularis; macaca mulatta; panthera tigris; sarcophilus harrisii; Sus scrofa gastritis 35818 Helicobacter pullorum liver; duodenum and caecum of broiler and layer Gallus galluss and human clinical samples gallus gallus; Homo sapiens; mus musculus gastroenteritis 570508 Helicobacter pylori P12 patient with duodenal ulcer NA Homo sapiens Gastritis; Peptic ulcer disease 765963 Helicobacter pylori PeCan4 Peruvian gastric cancer patient NA Homo sapiens Gastric ulcer 794851 Helicobacter pylori Sat464 Amerindian resident from Satipo region; Peru Satipo region; Peru Homo sapiens Gastric ulcer 512562 Helicobacter pylori Shi470 gastric antrum from Amerindian resident of remote Amazonian village of Shimaa; Peru Shimaa; Peru Homo sapiens Gastric ulcer 1352356 Helicobacter pylori SouthAfrica20 stomach South Africa Homo sapiens Gastric ulcer 1311573 Helicobacter pylori UM032 biospy sample from patient Malaysia: KL Homo sapiens Gastric ulcer 1321939 Helicobacter pylori UM037 biospy sample from patient Malaysia: KL Homo sapiens Gastric ulcer 1321940 Helicobacter pylori UM066 biospy sample from patient Malaysia: KL Homo sapiens Gastric ulcer 1321941 Helicobacter pylori UM298 gastric tissue Singapore Mus musculus Gastric ulcer 1321938 Helicobacter pylori UM299 biopsy sample Malaysia: KL Mouse Gastric ulcer 1127122 Helicobacter pylori XZ274 female TiBetan gastric cancer patient's stomach China Homo sapiens Gastric ulcer 1382920 Helicobacter pylori oki102 patient Japan: Okinawa Homo sapiens Gastric ulcer 1382921 Helicobacter pylori oki112 patient Japan: Okinawa Homo sapiens Gastric ulcer 1382922 Helicobacter pylori oki128 patient Japan: Okinawa Homo sapiens Gastric ulcer 1382923 Helicobacter pylori oki154 patient Japan: Okinawa Homo sapiens Gastric ulcer 1382924 Helicobacter pylori oki422 patient Japan: Okinawa Homo sapiens Gastric ulcer 1382925 Helicobacter pylori oki673 patient Japan: Okinawa Homo sapiens Gastric ulcer 1382926 Helicobacter pylori oki828 patient Japan: Okinawa Homo sapiens Gastric ulcer 1382927 Helicobacter pylori oki898 patient Japan: Okinawa Homo sapiens Gastric ulcer 210 Helicobacter pylori Gastric biopsy Mexico; Australia: Perth; Taiwan: Taipei Homo sapiens Gastric ulcer 472583 Ignatzschineria indica gastrointestinal tract of adult flesh fly India Homo sapiens necrotizing wounds 43995 Johnsonella ignava human gingival crevice Homo sapiens Periodontitis 428712 Jonquetella anthropi human France Homo sapiens Periodontitis 502 Kingella denitrificans Homo sapiens Septic arthritis; endocarditis; bite infection 504 Kingella kingae Homo sapiens Septic arthritis; endocarditis; bite infection 505 Kingella oralis human dental plaque USA: Boston Homo sapiens Septic arthritis; endocarditis; bite infection 39824 Klebsiella granulomatis human clinical samples Homo sapiens granuloma inguinale 54291 Klebsiella ornithinolytica human clinical samples Homo sapiens sepsis 571 Klebsiella oxytoca human clinical samples Netherlands Anopheles gambiae; arion lusitanicus; bactrocera tau; Bos taurus; Canis lupus; Canis lupus familiaris; carica papaya; Culex quinquefasciatus; cymbopogon citratus; Helicoverpa armigera; Homo sapiens; Lantana camara; Musa acuminata; orthosiphon stamineus; Ovis aries; polyalthia longifolia; rattus norvegicus; saccharum officinarum; vitis vinifera UTI; bacteraemia; wound infection; respiratory tract infection 573 Klebsiella pneumoniae human clinical samples amphiprion nigripes; Apis mellifera; bactrocera zonata; Bos taurus; Canis lupus; Canis lupus familiaris; Citrus maxima; Culex quinquefasciatus; elaeis guineensis; Equus caballus; gallus gallus; Homo sapiens; Musa acuminata; Musca domestica; nezara viridula; Oreochromis niloticus; oryctes rhinoceros; Oryza sativa; piper nigrum; saccharum officinarum; steinernema thermophilum; Sus scrofa; urochloa mutica; vigna radiata; Zea mays; Zingiber officinale pneumonia;meningitis; various infections 51288 Kluyvera ascorbata human clinical samples Homo sapiens; nepenthes albomarginata Bacteraemia; UTI; mediastinitis; line sepsis 580 Kluyvera cryocrescens human clinical samples arion lusitanicus; elymus tsukushiensis; epinephelus awoara; Homo sapiens; solenopsis invicta Bacteraemia; UTI; mediastinitis; line sepsis 57493 Kocuria human clinical samples Homo sapiens Cholecystitis; line-related sepsis 138300 Kytococcus schroeteri blood Germany Culex quinquefasciatus; Homo sapiens infections; endocarditis 1276 Kytococcus sedentarius human clinical samples agelas oroides; Homo sapiens infections; peritonitis 1613 Lactobacillus fermentum human oral cavity Apis dorsata; gallus gallus; Homo sapiens; Sus scrofa; Zea mays Dental caries 47715 Lactobacillus rhamnosus human various Homo sapiens; Zea mays commensal; opportunistic infections; endocarditis 1363 Lactococcus garvieae human clinical samples Acipenser persicus; aplodactylus punctatus; Bos taurus; Citrus reticulata; Homo sapiens; mugil cephalus; Musca domestica; Onchorhynchus mykiss; pelodiscus sinensis; seriola quinqueradiata; solenopsis invicta; thorectes lusitanicus infections 1358 Lactococcus lactis human clinical samples Anas platyrhynchos; Bos taurus; Capra hircus; Culex quinquefasciatus; Cyprinus carpio; daucus carota; epinephelus coioides; escherichia coli; etroplus maculatus; helix pomatia; hofmannophila pseudospretella; Homo sapiens; odontesthes platensis; Onchorhynchus mykiss; punica granatum; rana catesbeiana; raphanus sativus; reticulitermes chinensis; Salmo trutta; spinacia oleracea; tabernaemontana divaricata; Takifugu niphobles; vigna mungo; vigna radiata; vigna unguiculata; Zea mays; zootermopsis angusticollis liver abcess; empyema 168471 Laribacter hongkongensis cirrhotic patient with bacteremia and empyema Hong Kong Homo sapiens bacteremia; empyema 83655 Leclercia adecarboxylata human clinical samples Homo sapiens infections 28082 Legionella anisa potable waters and a cooling tower USA Homo sapiens Pontiac fever; Legionnaire's disease 28084 Legionella cherrii human clinical samples Homo sapiens pneumonia 28085 Legionella cincinnatiensis human clinical samples Homo sapiens pneumonia 463 Legionella dumoffii human clinical sample USA: New York Homo sapiens pneumonia; sepsis 453 Legionella feeleii human clinical sample France Homo sapiens cellulitis; abcess 464 Legionella gormanii human clinical sample Homo sapiens pneumonia 449 Legionella hackeliae human lung aspirate USA: Pennsylvania Homo sapiens pneumonia 456 Legionella jordanis water and sewage Homo sapiens respiratory infections 45067 Legionella lansingensis human clinical sample Homo sapiens pneumonia 450 Legionella longbeachae human respiratory tract USA Homo sapiens pneumonia 29423 Legionella oakridgensis cooling tower water Homo sapiens pneumonia 446 Legionella pneumophila human clinical samples acanthamoeba castellanii; Homo sapiens Legionnaire's disease 458 Legionella rubrilucens water USA: Los Angeles; Japan Homo sapiens pneumonia 28087 Legionella sainthelensi water near Mt St Helens Homo sapiens respiratory infections 40335 Legionella tucsonensis pleural fluid of renal transplant recipient USA:Arizona Homo sapiens pneumonia 28088 Legionella wadsworthii sputum USA: Los Angeles Homo sapiens pneumonia 144185 Leifsonia aquatica water; human clinical samples Homo sapiens septicemia 61646 Lelliottia amnigena human clinical samples Beta vulgaris; Canis lupus; Canis lupus familiaris; Ctenopharyngodon idella; daucus carota; eutrema wasabi; helix pomatia; Homo sapiens; medicago sativa; Musca domestica; Nicotiana attenuata; pleurotus eryngii; rutilus rutilus; Solanum tuberosum; vicia faba; vitis vinifera infections 174 Leptospira borgpetersenii human clinical samples Bos taurus; desmodus rotundus; Homo sapiens; mus musculus; Ovis aries; rattus norvegicus; rattus rattus; sturnira lilium; sturnira tildae infections 48782 Leptospira fainei human clinical samples Australia Homo sapiens leptospirosis 29506 Leptospira inadai human clinical samples Homo sapiens leptospirosis 173 Leptospira interrogans water; human clinical samples apodemus flavicollis; Bos taurus; Canis latrans; Canis lupus; Canis lupus familiaris; Capra hircus; cebus albifrons; cebus capucinus; Cervus elaphus; Equus caballus; Felis catus; glossophaga soricina; Homo sapiens; microtus socialis; mus musculus; myocastor coypus; ondatra zibethicus; Ovis aries; promops centralis; rattus norvegicus; rattus rattus; rhinophylla pumilio; Sus scrofa; Sus scrofa domesticus; uroderma bilobatum; vulpes vulpes; zalophus californianus infections 29507 Leptospira kirschneri human clinical samples apodemus agrarius; apodemus flavicollis; Bos taurus; Homo sapiens; phyllostomus hastatus leptospirosis 447106 Leptospira licerasiae water; human clinical samples and rats Peru Homo sapiens; philander opossum; rattus norvegicus; rattus rattus leptospirosis 29508 Leptospira meyeri human clinical samples Homo sapiens leptospirosis 28182 Leptospira noguchii human clinical samples Canis lupus familiaris; didelphis marsupialis; Homo sapiens leptospirosis 28183 Leptospira santarosai human clinical samples bos primigenius; Canis lupus familiaris; Capra hircus; Homo sapiens; Sus scrofa domesticus leptospirosis 28184 Leptospira weilii human clinical samples Equus caballus; Homo sapiens leptospirosis 409998 Leptospira wolffii human urine Thailand Canis lupus; Canis lupus familiaris; Homo sapiens; Ovis aries leptospirosis 40542 Leptotrichia buccalis human oral cavity Homo sapiens dental caries; sepsis; endocarditis 157692 Leptotrichia goodfellowii human clinical samples Homo sapiens infections 157688 Leptotrichia hofstadii human oral cavity Homo sapiens oral infections 157691 Leptotrichia shahii human oral cavity Homo sapiens oral infections 109328 Leptotrichia trevisanii human clinical samples Homo sapiens sepsis 157687 Leptotrichia wadei human oral cavity Homo sapiens periodontal disease 33964 Leuconostoc citreum human clinical samples cytisus striatus; Homo sapiens infections 1251 Leuconostoc fallax human clinical samples Homo sapiens infections 33968 Leuconostoc pseudomesenteroides human clinical samples amorphophallus konjac; cucumis sativus; Homo sapiens; prunus armeniaca infections 1642 Listeria innocua human clinical samples Homo sapiens bacteremis 1638 Listeria ivanovii human clinical samples Bos taurus; Homo sapiens; Ovis aries sepsis 1639 Listeria monocytogenes human clinical samples apodemus agrarius; apodemus peninsulae; Bos taurus; Capra hircus; cavia porcellus; Cervus elaphus; chinchilla brevicaudata; Homo sapiens; lama pacos; microtus arvalis; myodes glareolus; myodes rufocanus; myodes rutilus; oryctolagus cuniculus; Ovis aries; rattus rattus; Sus scrofa; vulpes lagopus listerosis 1421 Lysinibacillus sphaericus human clinical samples alligator sinensis; Anopheles maculipennis; Anopheles stephensi; arachis hypogaea; bistorta vivipara; cinnamomum pauciflorum; Citrus limon; Culex pipiens; Homo sapiens; murraya koenigii; Musa acuminata; nepenthes mirabilis; oryctolagus cuniculus; Oryza sativa; panax ginseng; Phaseolus vulgaris; poekilocerus pictus; theobroma cacao; Zea mays sepsis 75985 Mannheimia haemolytica human clinical samples Bos taurus; Capra hircus; Homo sapiens; Ovis aries; Sus scrofa; Sus scrofa domesticus Sepsis 47229 Massilia timonae blood; csf various Brassica rapa; Homo sapiens; Zea mays infections 158847 Megamonas hypermegale Gallus gallus Unknown 907 Megasphaera elsdenii sheep rumen Homo sapiens; Sus scrofa endocarditis 187326 Megasphaera micronuciformis Homo sapiens infections 39956 Methylobacterium mesophilicum human clinical samples Homo sapiens infections 31998 Methylobacterium radiotolerans human clinical samples cytisus striatus; Homo sapiens; melaleuca cajuputi; Nicotiana tabacum; Oryza sativa; passiflora edulis; saintpaulia ionantha; sarcodon aspratus infections 29427 Methylobacterium rhodesianum human clinical samples Homo sapiens infections 29429 Methylobacterium zatmanii human clinical samples Homo sapiens infections 36805 Microbacterium aurum human clinical samples Brassica rapa; Homo sapiens bacteremia; infections 57043 Microbacterium esteraromaticum human clinical samples carica papaya; grateloupia lanceolata; Homo sapiens; Oreochromis niloticus infections 69366 Microbacterium flavescens human clinical samples Homo sapiens; robinia pseudoacacia chronic granulomatous disease 33885 Microbacterium lacticum Homo sapiens; saccharum officinarum infections 82380 Microbacterium oxydans human clinical samples aplodactylus punctatus; arctium lappa; Brassica rapa; bursaphelenchus mucronatus; chionoecetes japonicus; Culex quinquefasciatus; Homo sapiens; lolium perenne Erythrasma 199592 Microbacterium paraoxydans Anopheles stephensi; bemisia tabaci; citrullus lanatus; foeniculum vulgare; Homo sapiens; Oreochromis niloticus infections 156977 Microbacterium resistens phyllospheres of grasses and the surface litter after mulching the sward; human clinical samples Germany delonix regia; Homo sapiens peritonitis 2033 Microbacterium testaceum rice Japan Phaseolus vulgaris; Suberites domuncula Plant disease 1270 Micrococcus luteus human clinical samples acropora digitifera; Anopheles gambiae; bemisia tabaci; capsicum annuum; chionoecetes japonicus; citrullus lanatus; Dendroctonus rufipennis; dipturus batis; hebeloma crustuliniforme; Homo sapiens; Moschus berezovskii; Musa acuminata; panax ginseng; Phaseolus vulgaris; Plectranthus barbatus; sphagnum magellanicum; Ulva australis; vitis vinifera bacteremia 33033 Micromonas micros human clinical samples Homo sapiens periodontitis 2051 Mobiluncus curtisii human clinical samples Homo sapiens bacterial vaginosis 114527 Mogibacterium diversum human oral cavities Japan Homo sapiens endodontic infections 114528 Mogibacterium neglectum human oral cavities Japan Homo sapiens endodontic infections 86332 Mogibacterium pumilum human oral cavities Homo sapiens endodontic infections 35519 Mogibacterium timidum human oral cavity Homo sapiens periodontitis 86333 Mogibacterium vescum human oral cavity Homo sapiens periodontitis 34059 Moraxella atlantae human clinical samples Homo sapiens infections 476 Moraxella bovis cattle Bos taurus infections 480 Moraxella catarrhalis human clinical samples Homo sapiens infections 34060 Moraxella caviae human clinical samples Homo sapiens infections 34061 Moraxella cuniculi Guinea pig infections 477 Moraxella lacunata human clinical samples Homo sapiens infections 90241 Moraxella lincolnii respiratory tract Sweden Homo sapiens infections 478 Moraxella nonliquefaciens Homo sapiens infections 34062 Moraxella osloensis human clinical samples Canis lupus; Canis lupus familiaris; Homo sapiens; pleurotus eryngii; sphagnum magellanicum bacteremia 29433 Moraxella ovis sheep Ovis aries infections 582 Morganella morganii human clinical samples bemisia tabaci; Culex quinquefasciatus; glossina fuscipes; hirudo medicinalis; Homo sapiens; Musca domestica; oxytropis glabra infections 36809 Mycobacterium abscessus abcesses various Homo sapiens abcesses 33894 Mycobacterium africanum Africa Bos taurus; Homo sapiens; Sus scrofa infections 470074 Mycobacterium angelicum Homo sapiens; pterophyllum scalare infections 342002 Mycobacterium arupense human clinical samples Utah Homo sapiens infections 1790 Mycobacterium asiaticum human clinical samples Homo sapiens infections 1764 Mycobacterium avium human clinical samples Bison Bison; bos indicus; Bos taurus; Canis lupus; Canis lupus familiaris; Capra hircus; capsicum annuum; Cervus elaphus; escherichia coli; Felis catus; gallus gallus; Homo sapiens; lepus europaeus; lophophorus lhuysii; mus musculus; Mycobacterium avium; netta rufina; oryctolagus cuniculus; Ovis aries; poecile montanus; querula purpurata; sturnus vulgaris; Sus scrofa; Sus scrofa domesticus; syncerus caffer; tragopan caboti; vulpes vulpes respiratory infections 564198 Mycobacterium bacteremicum human clinical samples various Homo sapiens mycobacteremia 56425 Mycobacterium bohemicum sputum Germany Homo sapiens respiratory infections 319705 Mycobacterium bolletii sputum and the bronchoalveolar fluid France Homo sapiens hemoptoic pneumonia 1765 Mycobacterium bovis Bison Bison; bos indicus; Bos taurus; Canis latrans; Canis lupus familiaris; Cervus elaphus; dama dama; Felis catus; Homo sapiens; Meles Meles; panthera leo; procyon lotor; rusa unicolor; Sus scrofa; syncerus caffer; tragelaphus strepsiceros; vulpes vulpes bovine tuberculosis 43348 Mycobacterium branderi human clinical samples Homo sapiens respiratory infections 78331 Mycobacterium canettii human clinical samples Africa Homo sapiens infections 28045 Mycobacterium celatum AIDS patients UK: London Homo sapiens; mustela putorius infections 1774 Mycobacterium chelonae human clinical samples Bos taurus; Carassius auratus; cyclopterus lumpus; danio rerio; Homo sapiens; puntius conchonius infections 222805 Mycobacterium chimaera human clinical samples Homo sapiens infections; endocarditis 339268 Mycobacterium colombiense human clinical samples Homo sapiens pseudotuberculosis 451644 Mycobacterium conceptionense human clinical samples France betta splendens; Homo sapiens respiratory infections 44010 Mycobacterium conspicuum human clinical samples Homo sapiens respiratory infections 81858 Mycobacterium elephantis elephant lung abcess Homo sapiens respiratory infections 1766 Mycobacterium fortuitum water damaged indoor walls of a children's day care centre Finland Bos taurus; Canis lupus familiaris; channa striata; Felis catus; Homo sapiens; Onchorhynchus tshawytscha; poecilia reticulata; Sus scrofa respiratory infections 1777 Mycobacterium gastri human clinical samples Homo sapiens respiratory infections 36812 Mycobacterium genavense human clinical samples amazona farinosa; carduelis carduelis; carduelis chloris; carduelis cucullata; cyanoramphus novaezelandiae; Homo sapiens; serinus canaria; taeniopygia guttata infections 134601 Mycobacterium goodii post-traumatic or post-surgical wound infections Homo sapiens infections 1778 Mycobacterium gordonae soil; water; human clinical samples corydoras sterbai; Homo sapiens; morone saxatilis respiratory infections 29311 Mycobacterium haemophilum subcutaneous abscess Israel danio rerio; Homo sapiens abcesses 33895 Mycobacterium interjectum human clinical samples Homo sapiens respiratory infections 1767 Mycobacterium intracellulare human clinical samples Homo sapiens respiratory infections 1768 Mycobacterium kansasii human clinical samples Bos taurus; Homo sapiens; Sus scrofa respiratory infections 354243 Mycobacterium kumamotonense human clinical samples Japan Homo sapiens infections 141349 Mycobacterium lentiflavum human clinical samples Homo sapiens infections 1769 Mycobacterium leprae human clinical samples various dasypus novemcinctus; Homo sapiens leprosy 480418 Mycobacterium lepromatosis human clinical samples various Homo sapiens lepromatous leprosy 1780 Mycobacterium malmoense human clinical samples Homo sapiens infections 560555 Mycobacterium mantenii human clinical samples Homo sapiens respiratory infections 1781 Mycobacterium marinum human clinical samples argyrosomus regius; chaetodon fasciatus; channa striata; Cyprinus carpio; dicentrarchus labrax; diplodus puntazzo; Homo sapiens; macropodus opercularis; melanotaenia praecox; morone saxatilis; pelodiscus sinensis; plecoglossus altivelis; siganus rivulatus aquarium granuloma 701042 Mycobacterium marseillense human clinical samples Homo sapiens respiratory infections 1806 Mycobacterium microti human clinical samples Homo sapiens respiratory infections 85693 Mycobacterium monacense human clinical samples Homo sapiens respiratory infections 56689 Mycobacterium mucogenicum human clinical samples channa striata; Homo sapiens respiratory infections 1795 Mycobacterium neoaurum human clinical samples; water damaged indoor walls of a children's day care centre Finland Homo sapiens; paeonia ostii bacteremia 459858 Mycobacterium noviomagense respiratory tract Netherlands Homo sapiens respiratory infections 240125 Mycobacterium parascrofulaceum human clinical samples Canada Homo sapiens respiratory infections 590652 Mycobacterium paraseoulense human clinical samples Homo sapiens respiratory infections 43304 Mycobacterium peregrinum human clinical samples USA Homo sapiens; tinca tinca soft-tissue and bone infections; catheter-related infections; pneumonitis 1771 Mycobacterium phlei human clinical samples Bos taurus; Homo sapiens infections 39693 Mycobacterium porcinum human clinical samples Homo sapiens; Sus scrofa respiratory infections; a spectrum of soft tissue and skeletal infections; bacteraemia and disseminated disease 486698 Mycobacterium riyadhense human clinical samples Homo sapiens infections 1783 Mycobacterium scrofulaceum human clinical samples Canada Bos taurus; Homo sapiens; Sus scrofa Cervical lymphadenitis 386913 Mycobacterium senuense human clinical samples Homo sapiens respiratory infections 386911 Mycobacterium seoulense human clinical samples Homo sapiens respiratory infections 243061 Mycobacterium sherrisii human clinical samples Homo sapiens respiratory infections 29313 Mycobacterium shimoidei lung Japan Homo sapiens respiratory infections 1784 Mycobacterium simiae human clinical samples Homo sapiens respiratory infections 1772 Mycobacterium smegmatis human clinical samples Bos taurus; Canis lupus familiaris; Felis catus; Homo sapiens; Sus scrofa; Sus scrofa domesticus infections 1787 Mycobacterium szulgai human clinical samples corydoras sterbai; Homo sapiens respiratory infections 1788 Mycobacterium terrae human clinical samples Homo sapiens respiratory infections 1797 Mycobacterium thermoresistibile human clinical samples Homo sapiens respiratory infections 44467 Mycobacterium tilburgii human clinical samples Homo sapiens disseminated infection 1773 Mycobacterium tuberculosis human clinical samples various bos indicus; Bos taurus; Canis lupus familiaris; Cervus elaphus; Felis catus; Homo sapiens; Sus scrofa; Sus scrofa domesticus tuberculosis 1809 Mycobacterium ulcerans human clinical samples Homo sapiens Buruli ulcer 547163 Mycobacterium vulneris human clinical samples Homo sapiens respiratory infections 1789 Mycobacterium xenopi human clinical samples Homo sapiens respiratory infections 2094 Mycoplasma arginini human clinical samples Bos taurus; Capra hircus; Homo sapiens; Ovis aries; panthera leo septicemia 55602 Mycoplasma buccale Homo sapiens Diseases of the gingival crevices and respiratory tract 56142 Mycoplasma faucium Homo sapiens Diseases of the gingival crevices and respiratory tract 2115 Mycoplasma fermentans human clinical samples Homo sapiens infections 2097 Mycoplasma genitalium human urogenital tract Homo sapiens pelvic inflammatory disease; bacterial vaginosis 2098 Mycoplasma hominis genito-urinary tract Homo sapiens pelvic inflammatory disease; bacterial vaginosis 171632 Mycoplasma ovis sheep and goats various Capra hircus; capricornis crispus; Homo sapiens; Ovis aries haemolytic anaemia 28227 Mycoplasma penetrans urogenital tract of AIDs patients USA Homo sapiens pelvic inflammatory disease; bacterial vaginosis 2104 Mycoplasma pneumoniae human clinical samples Homo sapiens pneumonia 55604 Mycoplasma primatum human clinical samples Monkeys; Homo sapiens infections 2124 Mycoplasma salivarium human clinical samples Homo sapiens infections 908285 Necropsobacter rosorum human clinical samples cavia porcellus; Homo sapiens; oryctolagus cuniculus bacteremia 267212 Neisseria bacilliformis oral cavity; respiratory tract; blood cultures USA Homo sapiens infections 483 Neisseria cinerea human clinical samples Homo sapiens infections 495 Neisseria elongata human clinical samples Homo sapiens infections; endocarditis 34026 Neisseria flava human clinical samples Homo sapiens rheumatic heart disease 484 Neisseria flavescens human clinical samples Homo sapiens meningitis; pneumonia; empyema; endocarditis; septicemia 485 Neisseria gonorrhoeae human clinical samples Homo sapiens gonorrhea 486 Neisseria lactamica human clinical samples Homo sapiens infections 496 Neisseria macacae oropharynges of rhesus monkeys (Macaca mulatta) Homo sapiens bacteremia 487 Neisseria meningitidis human clinical samples Homo sapiens meningococcal disease 488 Neisseria mucosa human clinical samples Homo sapiens endocarditis 33053 Neisseria perflava human clinical samples Homo sapiens endocarditis 29434 Neisseria pharyngis human clinical samples Homo sapiens endocarditis 489 Neisseria polysaccharea human clinical samples Homo sapiens infections 607712 Neisseria shayeganii human clinical samples USA Canis lupus; Canis lupus familiaris; Homo sapiens infections 490 Neisseria sicca human clinical samples Homo sapiens septicemia 28449 Neisseria subflava human clinical samples Homo sapiens post-surgical meningitis 28091 Neisseria weaveri dog bite wounds various Canis lupus familiaris; Homo sapiens wound infections 326523 Neisseria zoodegmatis dog bite wounds Homo sapiens wound infections 951 Neorickettsia sennetsu Homo sapiens Sennetsu fever 404578 Nocardia amamiensis sugar-cane field Japan Bos taurus; Homo sapiens Nocardiosis (including bacteraemia; pulmonary and soft tissue infections) 1824 Nocardia asteroides Homo sapiens Nocardiosis (including bacteraemia; pulmonary and soft tissue infections) 95162 Nocardia beijingensis soil China Felis catus; Homo sapiens Nocardiosis (including bacteraemia; pulmonary and soft tissue infections) 37326 Nocardia brasiliensis Homo sapiens Nocardiosis (including bacteraemia; pulmonary and soft tissue infections) 1823 Nocardia caviae Homo sapiens Nocardiosis (including bacteraemia; pulmonary and soft tissue infections) 135487 Nocardia cyriacigeorgica Homo sapiens Nocardiosis (including bacteraemia; pulmonary and soft tissue infections) 290231 Nocardia exalbida human clinical samples Japan Bos taurus; Homo sapiens Nocardiosis (including bacteraemia; pulmonary and soft tissue infections) 37329 Nocardia farcinica Homo sapiens Nocardiosis (including bacteraemia; pulmonary and soft tissue infections) 53429 Nocardia flavorosea Homo sapiens Nocardiosis (including bacteraemia; pulmonary and soft tissue infections) 37330 Nocardia nova Homo sapiens Nocardiosis (including bacteraemia; pulmonary and soft tissue infections) 132249 Nocardia veterana human bronchial lavage Homo sapiens Nocardiosis (including bacteraemia; pulmonary and soft tissue infections) 1823 Nocardia otitidiscaviarum hibiscus syriacus; Homo sapiens Nocardiosis (including bacteraemia; pulmonary and soft tissue infections) 45979 Nocardia pseudobrasiliensis human clinical samples Homo sapiens Nocardiosis (including bacteraemia; pulmonary and soft tissue infections) 37333 Nocardia transvalensis Homo sapiens Nocardiosis (including bacteraemia; pulmonary and soft tissue infections) 2014 Nocardiopsis dassonvillei ice sheet of the central Antarctic glacier hibiscus syriacus; Homo sapiens Mycetoma; cutaneous infection; pulmonary infection; conjunctivitis 48935 Novosphingobium aromaticivorans deep-terrestrial-subsurface sediments USA Homo sapiens COPD 529 Ochrobactrum anthropi blood Canis lupus; Canis lupus familiaris; Homo sapiens; pelodiscus sinensis Bacteraemia; endophthalmitis; liver abscess 419474 Ochrobactrum haematophilum human clinical samples arachis hypogaea; Homo sapiens infections 370111 Ochrobactrum pseudintermedium human clinical samples Homo sapiens infections 419475 Ochrobactrum pseudogrignonense human clinical samples allium sativum; aplysina lacunosa; Homo sapiens; Zingiber officinale infections 28118 Odoribacter splanchnicus crevicular spaces of canine periodontal disease patients USA Homo sapiens; Sus scrofa; Canis lupus familiaris periodontitis 1713 Oerskovia turbata Homo sapiens endocarditis and sepsis 948105 Okadaella gastrococcus gastric erosive ulcers Homo sapiens ulcers 90244 Oligella ureolytica Homo sapiens UTI; septicaemia 90245 Oligella urethralis Homo sapiens UTI; septicaemia 138595 Olsenella profusa sheep rumen and Sus scrofa jejunum Homo sapiens infections 133926 Olsenella uli sheep rumen and Sus scrofa jejunum Homo sapiens infections 237576 Oribacterium sinus Homo sapiens infections 784 Orientia tsutsugamushi apodemus agrarius; apodemus speciosus; bandicota indica; Canis lupus; Canis lupus familiaris; Homo sapiens; leptotrombidium deliense; menetes berdmorei; mus musculus; Ovis aries; rattus norvegicus; rattus rattus; tupaia glis Scrub typhus 44250 Paenibacillus alvei Citrus limon; Homo sapiens; theobroma cacao; Zea mays Septicaemia; meningitis; pneumonia 343517 Paenibacillus barengoltzii JPL spacecraft assembly facility USA:Pasadena Homo sapiens infections 44252 Paenibacillus macerans Homo sapiens Septicaemia; meningitis; pneumonia 217090 Paenibacillus pasadenensis JPL spacecraft assembly facility USA:Pasadena Homo sapiens; vitis vinifera infections 549 Pantoea agglomerans abrus precatorius; aesculus hippocastanum; agave salmiana; aloe vera; Anopheles stephensi; artocarpus integer; bactrocera tau; Beta vulgaris; Bos taurus; Brassica napus; Brassica oleracea; bursaphelenchus xylophilus; cajanus cajan; Canis lupus; Canis lupus familiaris; carica papaya; carludovica palmata; catharanthus roseus; ceiba pentandra; chionoecetes japonicus; cocos nucifera; cymbopogon citratus; daktulosphaira vitifoliae; daucus carota; elaeis guineensis; glycine max; gypsophila paniculata; hedysarum carnosum; Homo sapiens; hylocereus undatus; ipomoea batatas; juglans regia; kandelia candel; lymantria dispar; Mangifera indica; momordica charantia; morinda citrifolia; moringa oleifera; Musa acuminata; myzus persicae; nepenthes mirabilis; Nicotiana tabacum; Oryza sativa; Ovis aries; Phaseolus vulgaris; pisum sativum; prunus dulcis; punica granatum; pyrus communis; rAvenala madagascariensis; saccharum officinarum; Solanum lycopersicum; sorghum bicolor; sphagnum fallax; suaeda salsa; Sus scrofa; Sus scrofa domesticus; tradescantia spathacea; triticum aestivum; vitis vinifera; Zea mays; Zingiber officinale Bacteraemia; endocarditis; wound infection; cellulitis; alligator-bite infection; endophthalmitis 472694 Pantoea brenneri human clinical samples Homo sapiens infections 472705 Pantoea conspicua human clinical samples Homo sapiens; Nicotiana tabacum infections 472693 Pantoea eucrina human clinical samples Homo sapiens; tradescantia spathacea; Zea mays infections 472695 Pantoea septica human clinical samples Homo sapiens; Populus euphratica infections 823 Parabacteroides distasonis Homo sapiens Abscesses 46503 Parabacteroides merdae Homo sapiens Abscesses 34004 Paracoccus aminovorans Homo sapiens Unknown 59779 Paracoccus marcusii Homo sapiens Unknown 288426 Paracoccus marinus coastal seawater Japan Homo sapiens Unknown 53463 Paracoccus solventivorans soil Germany Homo sapiens Unknown 147645 Paracoccus yeei human clinical samples USA and Canada capsicum annuum; Homo sapiens infections 187400 Paracoccus zeaxanthinifaciens Homo sapiens Unknown 454154 Paraprevotella clara feces Japan Homo sapiens Unknown 454155 Paraprevotella xylaniphila feces Japan Homo sapiens Unknown 78258 Parascardovia denticolens human dental caries Homo sapiens Unknown 487175 Parasutterella excrementihominis feces Japan Homo sapiens Unknown 33033 Parvimonas micra Canis lupus; Canis lupus familiaris; Homo sapiens infections 749 Pasteurella aerogenes swine Sus scrofa infections 243701 Pasteurella caballi equine clinical samples Equus caballus infections 753 Pasteurella canis Canis lupus; Canis lupus familiaris; erignathus barbatus; Felis catus; Homo sapiens Wound infection; septicaemia; abscesses; pneumonia; endocarditis; meningitis 754 Pasteurella dagmatis Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens; panthera tigris Wound infection; septicaemia; abscesses; pneumonia; endocarditis; meningitis 747 Pasteurella multocida Anas platyrhynchos; bos grunniens; Bos taurus; Canis lupus familiaris; Capra hircus; eptesicus serotinus; Equus caballus; Felis catus; gallus gallus; Homo sapiens; meleagris gallopavo; melopsittacus undulatus; myotis mystacinus; oryctolagus cuniculus; Ovis aries; Ovis canadensis; pan troglodytes; pipistrellus kuhlii; pipistrellus nathusii; pipistrellus pipistrellus; pipistrellus pygmaeus; plecotus auritus; Sus scrofa; Sus scrofa domesticus; urochloa mutica; vespertilio murinus Wound infection; septicaemia; abscesses; pneumonia; endocarditis; meningitis 758 Pasteurella pneumotropica Canis lupus familiaris; curcuma longa; Felis catus; Homo sapiens; mus musculus; pandanus amaryllifolius; sansevieria trifasciata; Sus scrofa Wound infection; septicaemia; abscesses; pneumonia; endocarditis; meningitis 760 Pasteurella stomatis Canis lupus familiaris; Homo sapiens Wound infection; septicaemia; abscesses; pneumonia; endocarditis; meningitis 1254 Pediococcus acidilactici Bos taurus; Homo sapiens; rattus norvegicus Bacteraemia; abscesses; pulmonary infection 1255 Pediococcus pentosaceus Acipenser persicus; Bos taurus; cucumis sativus; gallus gallus; Homo sapiens; punica granatum Bacteraemia; abscesses; pulmonary infection 1496 Peptoclostridium difficile human clinical sample Homo sapiens infectious diarrhea 2741 Peptococcus niger Homo sapiens Abdominal sepsis 411567 Peptoniphilus gorbachii human clinical samples Homo sapiens infections 33030 Peptoniphilus indolicus Bos taurus; Homo sapiens infections 1261 Peptostreptococcus anaerobius Felis catus; Homo sapiens Mixed anaerobic infections; abscesses 1258 Peptostreptococcus asaccharolyticus Homo sapiens Mixed anaerobic infections; abscesses 33031 Peptostreptococcus lacrimalis human Homo sapiens Mixed anaerobic infections; abscesses 33032 Peptostreptococcus lactolyticus human Homo sapiens Mixed anaerobic infections; abscesses 33034 Peptostreptococcus prevotii Homo sapiens Mixed anaerobic infections; abscesses 341694 Peptostreptococcus stomatis human oral cavity Homo sapiens Mixed anaerobic infections; abscesses 33037 Peptostreptococcus vaginalis human Homo sapiens Mixed anaerobic infections; abscesses 38293 Photobacterium damselae carcharhinus plumbeus; chromis punctipinnis; cynoglossus semilaevis; epinephelus lanceolatus; erythropodium caribaeorum; hippocampus ingens; Homo sapiens; lates calcarifer; lutjanus guttatus; maja brachydactyla; scophthalmus maximus; seriola dumerili; seriola quinqueradiata; solea senegalensis; sparus aurata; uroteuthis chinensis Necrotizing wound infection; bacteraemia 414049 Pigmentiphaga daeguensis wastewater of a dye works Korea Homo sapiens infections 703 Plesiomonas shigelloides channa striata; Homo sapiens; Ictalurus punctatus; Oreochromis niloticus; pelteobagrus fulvidraco; Salmo trutta enteric disease 28123 Porphyromonas asaccharolytica Canis lupus familiaris; Homo sapiens Mixed anaerobic infections at various sites; periodontitis; human and animal bites 41976 Porphyromonas catoniae human gingival crevice Homo sapiens Mixed anaerobic infections at various sites; periodontitis; human and animal bites 29524 Porphyromonas circumdentaria Homo sapiens Mixed anaerobic infections at various sites; periodontitis; human and animal bites 28124 Porphyromonas endodontalis infected dental root canals Homo sapiens Mixed anaerobic infections at various sites; periodontitis; human and animal bites 837 Porphyromonas gingivalis Homo sapiens; Ovis aries periodontitis 28114 Porphyromonas levii Homo sapiens periodontitis 28115 Porphyromonas macacae Homo sapiens periodontitis 281920 Porphyromonas uenonis human clinical samples; feces Homo sapiens infections 419005 Prevotella amnii human amniotic fluid USA Homo sapiens PID 305719 Prevotella baroniae human oral cavity UK Homo sapiens infections 242750 Prevotella bergensis infections of the skin and soft tissues UK Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 28125 Prevotella bivia human clinical samples Capra hircus; Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 28126 Prevotella buccae human oral cavity Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 28127 Prevotella buccalis human oral cavity Capra hircus; Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 165179 Prevotella copri feces Japan Homo sapiens infections 28128 Prevotella corporis Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 52227 Prevotella dentalis dental root canals Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 28129 Prevotella denticola human oral cavity Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 28130 Prevotella disiens human clinical samples Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 76123 Prevotella enoeca human gingival crevice Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 28113 Prevotella heparinolytica human oral cavity Japan Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 28131 Prevotella intermedia Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 840 Prevotella loescheii Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 439703 Prevotella maculosa human oral cavity Homo sapiens periodontitis 189722 Prevotella marshii human oral cavity Homo sapiens infections 28132 Prevotella melaninogenica Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 189723 Prevotella micans human oral cavity Homo sapiens periodontitis 282402 Prevotella multiformis human subgingival plaque Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 310514 Prevotella multisaccharivorax human subgingival plaque Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 425941 Prevotella nanceiensis human clinical samples France Homo sapiens infections 28133 Prevotella nigrescens Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 28134 Prevotella oralis human oral cavity Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 28135 Prevotella oris human oral cavity Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 28136 Prevotella oulorum Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 60133 Prevotella pallens Homo sapiens Unknown 839 Prevotella ruminicola bovine rumen Homo sapiens; Ovis aries; Bos taurus Unknown 228604 Prevotella salivae human oral cavity Homo sapiens Unknown 363265 Prevotella stercorea feces Japan Homo sapiens Unknown 76122 Prevotella tannerae human oral cavity Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 28137 Prevotella veroralis Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 28119 Prevotella zoogleoformans human gingival crevice Homo sapiens Abscesses; bacteraemia; wound infection; bite infections; genital tract infections; periodontitis; endodontic infection 556499 Propionibacterium acidifaciens human oral cavity UK Homo sapiens Abscesses; endocarditis; bacteraemia; septic arthritis; endophthalmitis 1748 Propionibacterium acidipropionici Homo sapiens Abscesses; endocarditis; bacteraemia; septic arthritis; endophthalmitis 1747 Propionibacterium acnes Bos taurus; Canis lupus familiaris; eisenia fetida; Equus caballus; Homo sapiens; Ovis aries; Sus scrofa; Sus scrofa domesticus Abscesses; endocarditis; bacteraemia; septic arthritis; endophthalmitis 33010 Propionibacterium avidum feces Homo sapiens Abscesses; endocarditis; bacteraemia; septic arthritis; endophthalmitis 33011 Propionibacterium granulosum Homo sapiens Abscesses; endocarditis; bacteraemia; septic arthritis; endophthalmitis 1750 Propionibacterium propionicum Homo sapiens Abscesses; endocarditis; bacteraemia; septic arthritis; endophthalmitis 584 Proteus mirabilis alligator sinensis; Apis mellifera; bombyx mori; Bos taurus; Canis lupus; Canis lupus familiaris; Equus caballus; Felis catus; gallus gallus; Homo sapiens; larus argentatus; mus musculus; Musca domestica; Ovis aries; rattus norvegicus; scylla paramamosain; Solanum lycopersicum; Sus scrofa; Sus scrofa domesticus UTI; bacteraemia; wound infection; abscesses 102862 Proteus penneri Homo sapiens UTI; bacteraemia; wound infection; abscesses 585 Proteus vulgaris Bos taurus; Culex quinquefasciatus; Felis catus; Helicoverpa armigera; Homo sapiens; Ovis aries; phoenix canariensis; raphanus sativus; sardina pilchardus; silurus meridionalis; Sus scrofa; triakis scyllium UTI; bacteraemia; wound infection; abscesses 126385 Providencia alcalifaciens Apis cerana; Culex quinquefasciatus; drosophila melanogaster; epinephelus awoara; Homo sapiens; Musca domestica; plutella xylostella; Sus scrofa domesticus; thorectes lusitanicus UTI; wound infection; bacteraemia 587 Providencia rettgeri Culex quinquefasciatus; galleria mellonella; Homo sapiens; Musca domestica; Populus euphratica; Sus scrofa; vitis vinifera UTI; wound infection; bacteraemia 588 Providencia stuartii Homo sapiens; leptonycteris curasoae; Musca domestica; wohlfahrtia magnifica UTI; wound infection; bacteraemia 287 Pseudomonas aeruginosa human clinical samples various Acipenser sturio; aloe vera; arachis hypogaea; bemisia tabaci; Bos taurus; Brassica rapa; Canis lupus familiaris; Capra hircus; capsicum annuum; capsicum frutescens; carica papaya; chamaesyce hirta; chromolaena odorata; cicer arietinum; citrullus lanatus; conus leopardus; conus litteratus; Culex quinquefasciatus; curcuma longa; Cyprinus carpio; diabrotica virgifera; Equus caballus; etroplus maculatus; etroplus suratensis; euonymus japonicus; eutrema wasabi; gallus gallus; glomus mosseae; glycine max; gossypium hirsutum; Helicoverpa armigera; Homo sapiens; hyriopsis cumingii; Labeo rohita; larimichthys crocea; Leptinotarsa decemlineata; ligustrum sinense; luffa aegyptiaca; malus x domestica; Mangifera indica; mimosa pudica; Moschus berezovskii; Musa acuminata; Musca domestica; Nicotiana glauca; Nicotiana tabacum; Onchorhynchus mykiss; oryctes rhinoceros; oryctolagus cuniculus; Oryza sativa; ostrinia nubilalis; Ovis aries; panax ginseng; parthenium hysterophorus; Phaseolus vulgaris; pheretima sieboldi; phlebotomus papatasi; piper nigrum; pisum sativum; poekilocerus pictus; praecitrullus fistulosus; rhynchophorus ferrugineus; sesamum indicum; siganus canaliculatus; Solanum lycopersicum; Solanum melongena; Solanum tuberosum; solenopsis invicta; spodoptera litura; suaeda maritima; Sus scrofa; Sus scrofa domesticus; triticum aestivum; vicia faba; yunnanacris yunnaneus; Zea mays; Zingiber officinale Bacteraemia; UTI; wound infection; abscesses; septic arthritis; conjunctivitis; endocarditis; meningitis; otitis 43263 Pseudomonas alcaligenes avenella flexuosa; capsicum annuum; Homo sapiens; Oreochromis niloticus; Taxus globosa Bacteraemia; UTI; wound infection; abscesses; septic arthritis; conjunctivitis; endocarditis; meningitis; otitis 53406 Pseudomonas anguilliseptica Anopheles stephensi; Homo sapiens; Oreochromis niloticus Unknown 294 Pseudomonas fluorescens abelMoschus esculentus; agaricus bisporus;rias davidianus; Anopheles stephensi; arachis hypogaea; bazzania trilobata; Beta vulgaris; bombyx mori; Brassica napus; Brassica oleracea; Brassica rapa; bursaphelenchus mucronatus; bursaphelenchus xylophilus; buxbaumia aphylla; cajanus cajan; capsicum annuum; cichorium endivia; cichorium intybus; corallorhiza trifida; cucumis sativus; euproctis chrysorhoea; gossypium hirsutum; Homo sapiens; hygrophorus russula; laccaria bicolor; laccaria laccata; lactuca sativa; lemna minor; lentinula edodes; lupinus albus; macrotyloma uniflorum; melilotus indicus; microcystis aeruginosa; mucuna pruriens; Nicotiana attenuata; Nicotiana tabacum; Oryza sativa; pisum sativum; pleurotus ostreatus; pyrus communis; sialia sialis; Solanum lycopersicum; Solanum tuberosum; sphagnum fallax; sphagnum palustre; thanatephorus cucumeris; triticum aestivum; vigna mungo; xiphias gladius; Zea mays Bacteraemia; UTI; wound infection; abscesses; septic arthritis; conjunctivitis; endocarditis; meningitis; otitis 219573 Pseudomonas meridiana Anopheles stephensi; Homo sapiens Unknown 76759 Pseudomonas monteilii human clinical samples France azadirachta indica; chionoecetes opilio; cicer arietinum; Homo sapiens; Oreochromis niloticus; Plectranthus barbatus; Zea mays Bacteraemia; UTI; wound infection; abscesses; septic arthritis; conjunctivitis; endocarditis; meningitis; otitis 78327 Pseudomonas mosselii human clinical samples bruguiera gymnorhiza; Homo sapiens; Musa acuminata; Oreochromis niloticus; Oryza sativa Bacteraemia; UTI; wound infection; abscesses; septic arthritis; conjunctivitis; endocarditis; meningitis; otitis 47885 Pseudomonas oryzihabitans rice paddy; grass; human clinical samples bemisia tabaci; Homo sapiens; Solanum nigrum; suaeda salsa septicemia (sepsis); peritonitis; endophthalmitis; bacteremia 319939 Pseudomonas otitidis human clinical samples USA aloe vera; Anopheles stephensi; Homo sapiens ear infections 330 Pseudomonas pseudoalcaligenes Homo sapiens; Musca domestica; rammeacris kiangsu Bacteraemia; UTI; wound infection; abscesses; septic arthritis; conjunctivitis; endocarditis; meningitis; otitis 303 Pseudomonas putida acanthodiaptomus denticornis; allium sativum; arachis hypogaea; Avena sativa; bactrocera tau; bemisia tabaci; Beta vulgaris; cajanus cajan; carica papaya; chionoecetes opilio; cichorium endivia; cydonia oblonga; elaeis guineensis; glomus intraradices; Homo sapiens; hymeniacidon perlevis; larimichthys crocea; lolium perenne; lymantria dispar; mammillaria fraileana; Nicotiana attenuata; olea europaea; Oryza sativa; padina pavonica; paeonia ostii; pangasianodon hypophthalmus; pinus tabuliformis; piper nigrum; pisum sativum; pleurotus ostreatus; portulaca grandiflora; prosopis strombulifera; saccharum officinarum; Solanum lycopersicum; Solanum tuberosum; sonchus arvensis; sorghum bicolor; suaeda salsa; thanatephorus cucumeris; thorectes lusitanicus; triticum aestivum; Ulva rigida; vitis vinifera; Zea mays; zosterops lateralis Bacteraemia; UTI; wound infection; abscesses; septic arthritis; conjunctivitis; endocarditis; meningitis; otitis 316 Pseudomonas stutzeri Anthyllis vulneraria; bemisia tabaci; chlorophytum borivilianum; cicer arietinum; costelytra Zealandica; crassostrea virginica; Culex quinquefasciatus; curcuma longa; Echinacea tennesseensis; gracilaria corticata; Helicoverpa armigera; Homo sapiens; hordeum vulgare; hymeniacidon perlevis; hypnea musciformis; larimichthys crocea; Musa acuminata; Oryza sativa; plutella xylostella; Populus euphratica; sarcocornia perennis; Solanum melongena; sorghum bicolor; stellera chamaejasme; styela clava; thorectes lusitanicus; tillandsia recurvata; triticum aestivum; triticum turgidum; Ulva reticulata; Zea mays Bacteraemia; UTI; wound infection; abscesses; septic arthritis; conjunctivitis; endocarditis; meningitis; otitis 1611770 Pseudomonas sp. MRSN12121 Urine USA Homo sapiens Unknown 1332075 Pseudomonas syringae UMAF0158 NA NA plants Apical necrosis of mango 1095103 Pseudomonas syringae pv. actinidiae ICMP 18884 NA New Zealand: Te Puke plants Plant rot 1194418 Pseudomonas syringae pv. actinidiae ICMP 9617 NA New Zealand plants Plant rot 264730 Pseudomonas syringae pv. phaseolicola 1448A NA NA plants Root rot 223283 Pseudomonas syringae pv. tomato str. DC3000 NA NA plants Root rot 47883 Pseudomonas synxantha Brassica rapa; Homo sapiens; pisum sativum; pleurotus ostreatus Unknown 2074 Pseudonocardia autotrophica NA Unknown 445576 Pseudonocardia sp. AL041005-10 NA Peru Trachymyrmex cornetzi Unknown 1688404 Pseudonocardia sp. EC080610-09 exoskeleton of ant Panama: Barro Colorado Island Apterostigma dentigerum Unknown 1096856 Pseudonocardia sp. EC080619-01 exoskeleton of ant Panama: Barro Colorado Island Apterostigma dentigerum Unknown 1096868 Pseudonocardia sp. EC080625-04 exoskeleton of ant Panama: Frijoles Peninsula Apterostigma dentigerum Unknown 1641402 Pseudonocardia sp. HH130629-09 Exoskeleton of ant Costa Rica: La Selva Biological Station Apterostigma Unknown 113287 Pseudoramibacter alactolyticus Homo sapiens Periodontal disease; wound infection; abscesses 180588 Psychrobacter faecalis faeces Germany pigeon Unknown 281738 Psychrobacter nivimaris samples of the Southern Ocean near Antarctica environmental Unknown 29432 Psychrobacter phenylpyruvicus blood Homo sapiens endocarditis; peritonitis and fungating lesion of the food 228654 Psychrobacter pulmonis lungs of lambs Spain: Madrid Homo sapiens; Ovis aries; Populus euphratica; undaria pinnatifida Unknown 861445 Psychrobacter sanguinis blood USA Homo sapiens infections 1699621 Psychrobacter sp. P11F6 NA Norway: Norwegian Sea Tunicate; Botryllus sp. Unknown 1699623 Psychrobacter sp. P11G3 NA Norway: Norwegian Sea Tunicate; Botryllus sp. Unknown 349106 Psychrobacter sp. PRwf-1 Skin and gills of Lutjanus vivanus Puerto Rico: Off the coast of Lo??za Fish; Lutjanus vivanus Unknown 638849 Pyramidobacter piscolens human oral cavity UK Homo sapiens periodontal disease 34038 Rahnella aquatilis Homo sapiens UTI; septicaemia 105219 Ralstonia mannitolilytica strain SN82F48 bone marrow USA: San Francisco Homo sapiens Meningitis; peritonitis; bacteraemia; UTI; pulmonary infection 329 Ralstonia pickettii bemisia tabaci; capsicum frutescens; Homo sapiens; Pandora neoaphidis; Populus euphratica; pristiphora abietina; rattus flavipectus; Solanum lycopersicum; urochloa mutica Meningitis; peritonitis; bacteraemia; UTI; pulmonary infection 1262456 Ralstonia solanacearum FQY_4 bacterial wilt Nursery; which is used for evaluating crops resistance to Ralstonia China: Guizhou province plants Bacterial wilt 288705 Renibacterium salmoninarum ATCC 33209 NA NA Salmonidae Unknown 393664 Rhizobium cellulosilyticum Homo sapiens; medicago lupulina; oxytropis cachemiriana Unknown 1061 Rhodobacter capsulatus Homo sapiens Unknown 43767 Rhodococcus equi Bos taurus; Canis lupus familiaris; Capreolus Capreolus; Cervus elaphus; elymus tsukushiensis; Equus caballus; Felis catus; haliclona simulans; Homo sapiens; Ovis aries; Sus scrofa; Sus scrofa domesticus; Zea mays Bacteraemia; osteomyelitis; lung abscesses 1833 Rhodococcus erythropolis blood Homo sapiens infection; septicemia; encephalitis 1828 Rhodococcus fascians Homo sapiens infection 38312 Rhodococcus rhodnii R. prolixus Unknown 1829 Rhodococcus rhodochrous Homo sapiens infection 685727 Rhodococcus equi 103S NA NA Homo sapiens Pneumonia 347255 Rickettsia africae ESF-5 cattle tick; Amblyomma variegatum; collected Ethiopia Tick; Amblyomma variegatum African tick bite fever 293614 Rickettsia akari str. Hartford mites Hartford Mite Rickettsialpox 787 Rickettsia australis Homo sapiens Rickettsial spotted fever; tick typhus; tick-bite fever; rickettsialpox 336407 Rickettsia bellii RML369-C triturated (powdered) pool of unfed adult Dermacentor variabilis ticks collected from vegetation near Fayetteville; Arkansas; USA; near Fayetteville Arkansas USA Tick; Dermacentor variabilis Unknown 1359193 Rickettsia bellii str. RML An4 NA Argentina Arvicanthis neumanni Unknown 293613 Rickettsia canadensis str. McKiel ticks Canada Tick; Haemaphysalis leporispalustris Epidemic typhus 272944 Rickettsia conorii str. Malish 7 human South Africa Homo sapiens Rocky mountain spotted fever 315456 Rickettsia felis URRWXCal2 NA NA Homo sapiens Rocky mountain spotted fever 1359196 Rickettsia felis str. Pedreira NA Brazil Ctenocephalides felis Unknown 35789 Rickettsia helvetica Homo sapiens Rocky mountain spotted fever 37816 Rickettsia honei Homo sapiens Rocky mountain spotted fever 35790 Rickettsia japonica Homo sapiens spotted fever 416276 Rickettsia massiliae MTU5 the tick Rhipicephalus turanicus collected from horses Le Sambuc; Bouches-du Rhone; France Rhipicephalus turanicus spotted fever 109232 Rickettsia monacensis Ixodes ricinus tick collected in a city park; the English Garden in Munich; Germany Germany Dermacentor marginatus; Homo sapiens; Ixodes persulcatus; Ixodes ricinus spotted fever 45261 Rickettsia mongolotimonae clinical samples China Homo sapiens spotted fever 1359202 Rickettsia parkeri str. AT#24 NA Brazil Tick; Amblyomma triste Maculatum infection 1359203 Rickettsia parkeri str. Grand Bay NA USA Tick; Amblyomma maculatum Maculatum infection 1359189 Rickettsia parkeri str. Tate's Hell NA USA Tick; Amblyomma maculatum Maculatum infection 1290428 Rickettsia prowazekii str. Breinl NA Poland: Warsaw Homo sapiens Rickettsial spotted fever; tick typhus; tick-bite fever; rickettsialpox 272947 Rickettsia prowazekii str. Madrid E typhus patient Madrid Homo sapiens Epidemic typhus; Mediterranean spotted fever 1290427 Rickettsia prowazekii str. NMRC Madrid E NA Spain: Madrid Homo sapiens Rickettsial spotted fever; tick typhus; tick-bite fever; rickettsialpox 449216 Rickettsia prowazekii str. Rp22 NA NA Homo sapiens Rickettsial spotted fever; tick typhus; tick-bite fever; rickettsialpox 1359199 Rickettsia rhipicephali str. Ect NA USA Tick; Rhipicephalus sanguineus Rickettsial spotted fever; tick typhus; tick-bite fever; rickettsialpox 33992 Rickettsia rhipicephali strain HJ#5 vegetation Brazil: Atlantic rain forest area in Intervales State Park; Ribeirao Grande Municipality; state of Sao Paulo Haemaphysalis juxtakochi Rickettsial spotted fever; tick typhus; tick-bite fever; rickettsialpox 392021 Rickettsia rickettsii str. 'Sheila Smith' from a patient with Rocky Mountain spotted fever NA Homo sapiens Rocky mountain spotted fever 452659 Rickettsia rickettsii str. Iowa NA NA Homo sapiens Rocky mountain spotted fever 35793 Rickettsia sibirica Homo sapiens; hyalomma truncatum; myodes rutilus Rickettsial spotted fever; tick typhus; tick-bite fever; rickettsialpox 941638 Rickettsia slovaca 13-B ticks throughout Europe NA Tick; Dermacentor sp. Rickettsial spotted fever; tick typhus; tick-bite fever; rickettsialpox 1003202 Rickettsia typhi str. B9991CWPP Bandicoot rats (Bandicota sp Myanmar Bandicoot rat; Bandicota sp Rickettsial spotted fever; tick typhus; tick-bite fever; rickettsialpox 1003201 Rickettsia typhi str. TH1527 blood of a human with murine typhus NA Homo sapiens Rickettsial spotted fever; tick typhus; tick-bite fever; rickettsialpox 257363 Rickettsia typhi str. Wilmington NA NA NA Murine typhus 445728 Rickettsiella melolonthae insects Lorsch disease of white grubs 693978 Riemerella anatipestifer ATCC 11845 = DSM 15868 NA NA poultry Polyserositis; Septcemia 1228997 Riemerella anatipestifer RA-CH-1 sick duck China: Sichuan Duck Polyserositis; Septcemia 762948 Rothia dentocariosa ATCC 17931 NA NA Homo sapiens Endocarditis; abscesses 680646 Rothia mucilaginosa DY-18 NA NA Homo sapiens Endocarditis; Meningitis; Peritonitis 43675 Rothia mucilaginosa strain NUM-Rm6536 tongue plaque of a healthy human adult Japan:Osaka Homo sapiens Endocarditis; Meningitis; Peritonitis 33038 Ruminococcus gnavus Homo sapiens bacteremia 33035 Ruminococcus productus Homo sapiens Abdominal sepsis; abscesses 657323 Ruminococcus sp. SR1/5 NA NA Homo sapiens Unknown 657313 Ruminococcus torques L2-14 NA NA Homo sapiens Unknown 471857 Saccharomonospora viridis DSM 43017 Irish peat and was originally classified as Thermomonospora viridis NA NA Farmer's lung disease; Hypersensitivity pneumonitis 28042 Saccharopolyspora rectivirgula Moldy hay UK Bos taurus; Homo sapiens Farmer's lung 218493 Salmonella bongori NCTC 12419 NA NA reptiles Gastroenteritis; enteric fever; osteomyelitis 28901 Salmonella choleraesuis (enterica) Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 41514 Salmonella enterica subsp. arizonae serovar 62 cornsnake Oregon Cornsnake; Pantherophis guttatus guttatus Gastroenteritis; enteric fever; osteomyelitis 454166 Salmonella enterica subsp. enterica serovar Agona str. SL483 NA NA NA Gastroenteritis; enteric fever; osteomyelitis 1454592 Salmonella enterica subsp. enterica serovar Anatum str. CDC 06-0532 strain USDA-ARS-USMARC-1764 NA USA: United States BIFSCo Region 5 Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 1454590 Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1175 ground beef USA: United States BIFSCo Region 3 Bos taurus Gastroenteritis; enteric fever; osteomyelitis 1454585 Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS-USMARC-1735 bovine pre-evisceration carcass USA: BIFSCo Region 3 Bos taurus Gastroenteritis; enteric fever; osteomyelitis 321314 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 439851 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 NA NA Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 1412451 Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110223 Human- mung bean-Outbreak Canada: Ontario Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 1243619 Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110354 NA Canada: Alberta Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 1243621 Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110356 Human-Outbreak Canada: Alberta Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 1244111 Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110357 Human-Sporadic Canada: Alberta Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 1244112 Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110358 Human-Sporadic Canada: Alberta Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 1244113 Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110359 Human-Sporadic Canada: Alberta Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 1244118 Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110360 Human-Sporadic Canada: Alberta Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 1244119 Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110361 Human-Sporadic Canada: Alberta Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 1244120 Salmonella enterica subsp. enterica serovar Enteritidis str. EC20111095 Human-Outbreak Canada: Quebec Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 1412592 Salmonella enterica subsp. enterica serovar Enteritidis str. EC20121175 chick paper Canada: Ontario Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 550537 Salmonella enterica subsp. enterica serovar Enteritidis str. P125109 NA NA NA Gastroenteritis; enteric fever; osteomyelitis 1412452 Salmonella enterica subsp. enterica serovar Enteritidis str. SA19992322 Human-Stool Canada: Quebec Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 149539 Salmonella enterica subsp. enterica serovar Enteritidis strain Durban blood South Africa: Durban Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 550538 Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 NA NA Gallus gallus Gastroenteritis; enteric fever; osteomyelitis 1124936 Salmonella enterica subsp. enterica serovar Heidelberg str. 41578 Stool USA: OH Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 1160717 Salmonella enterica subsp. enterica serovar Heidelberg str. B182 NA NA Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 1299044 Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002064 stool NA Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 454169 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 NA NA Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 611 Salmonella enterica subsp. enterica serovar Heidelberg strain 12-4374 human stool Canada: Quebec Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 595 Salmonella enterica subsp. enterica serovar Infantis strain 1326/28 Central Veterinary Lab; Weybridge United Kingdom Gallus gallus Gastroenteritis; enteric fever; osteomyelitis 1267753 Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992 Stool USA: Arizona Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 1454603 Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1903 ground beef USA: United States BIFSCo Region 6 Bos taurus Gastroenteritis; enteric fever; osteomyelitis 1454606 Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1921 stool USA Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 1454627 Salmonella enterica subsp. enterica serovar Newport str. CDC 2010K-2159 stool USA: BIFSCo Region 7 Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 423368 Salmonella enterica subsp. enterica serovar Newport str. SL254 NA NA Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 1454620 Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1927 fecal swab USA: United States BIFSCo Region 6 Bos taurus Gastroenteritis; enteric fever; osteomyelitis 877468 Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1 NA USA: BIFSCo Region 2 Bos taurus Gastroenteritis; enteric fever; osteomyelitis 1243585 Salmonella enterica subsp. enterica serovar Ouakam Turkey Breakfast sausage USA: Tulsa Oklahoma Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 54388 Salmonella enterica subsp. enterica serovar Paratyphi A CMCC 50503 NA China:Jiangsu Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 54388 Salmonella enterica subsp. enterica serovar Paratyphi A CMCC 50973 NA China:Jiangsu Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 554290 Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601 child with paratyphoid fever Karachi; Pakistan Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 295319 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 NA NA Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 54388 Salmonella enterica subsp. enterica serovar Paratyphi A strain CMCC50093 feces China:Beijing Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 1016998 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 stool sample of an infected woman Penang Malaysia May Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 476213 Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 NA NA Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 439843 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 NA NA Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 28150 Salmonella enterica subsp. enterica serovar Senftenberg faeces NA Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 600 Salmonella enterica subsp. enterica serovar Thompson strain RM1984 stool sample USA: California Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 600 Salmonella enterica subsp. enterica serovar Thompson strain RM1986 stool sample USA: California Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 220341 Salmonella enterica subsp. enterica serovar Typhi str. CT18 isolated from blood Vietnam: Mekong Delta region Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 209261 Salmonella enterica subsp. enterica serovar Typhi str. Ty2 NA NA Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 90370 Salmonella enterica subsp. enterica serovar Typhi strain B/SF/13/03/195 carrier foodhandler Malaysia: Kelantan Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 90370 Salmonella enterica subsp. enterica serovar Typhi strain PM016/13 Well water Malaysia: Kelantan Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 1454642 Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2011K-0870 stool USA: BIFSCo Region 7 Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 99287 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 NA NA Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 718274 Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 NA Japan Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 1454639 Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1899 ground beef USA: United States BIFSCo Region 1 Bos taurus Gastroenteritis; enteric fever; osteomyelitis 90371 Salmonella enterica subsp. enterica serovar Typhimurium strain 138736 stool sample from patient with gastroenteritis Israel Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 90371 Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 blood Mexico: Mexico City Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 90371 Salmonella enterica subsp. enterica serovar Typhimurium strain FORC_015 blood South Korea Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 59201 Salmonella enterica subsp. enterica strain YU39 blood Mexico: Yucatan Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 149539 Salmonella enteritidis Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 54388 Salmonella paratyphi Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 90370 Salmonella typhi Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 90371 Salmonella typhimurium Homo sapiens Gastroenteritis; enteric fever; osteomyelitis 446469 Sanguibacter keddieii DSM 10542 bovine blood NA Bos taurus Unknown 78259 Scardovia inopinata human dental caries Italy Homo sapiens Dental caries 230143 Scardovia wiggsiae human oral cavity and clinical material UK Homo sapiens Dental caries 826 Sebaldella termitidis Homo sapiens infection 640132 Segniliparus rotundus DSM 44985 human sputum NA Homo sapiens respiratory infection 671224 Selenomonas artemidis human gingival crevice Homo sapiens Bacteraemia; lung abscess 135079 Selenomonas dianae human gingival crevice Homo sapiens Bacteraemia; lung abscess 135080 Selenomonas flueggei human gingival crevice Homo sapiens Bacteraemia; lung abscess 135082 Selenomonas infelix human gingival crevice Homo sapiens Bacteraemia; lung abscess 135083 Selenomonas noxia human gingival crevice Homo sapiens Bacteraemia; lung abscess 927704 Selenomonas ruminantium subsp. lactilytica TAM6421 the sheep rumen NA Ovis aries Unknown 69823 Selenomonas sputigena Homo sapiens Bacteraemia; lung abscess 713030 Selenomonas sp. oral taxon 136 NA USA: Boston; MA Homo sapiens periodontal disease 712538 Selenomonas sp. oral taxon 478 strain F0592 curette USA: Boston; MA Homo sapiens periodontal disease 61651 Serratia ficaria Smyrna figs and the fig wasp Blastophaga psenes Homo sapiens Septicaemia; abscesses; burn infections; osteomyelitis 1346614 Serratia liquefaciens ATCC 27592 NA NA Homo sapiens Septicaemia; abscesses; burn infections; osteomyelitis 614 Serratia liquefaciens Human skin ulcer USA:DC; Spain: Santander Homo sapiens Septicaemia; abscesses; burn infections; osteomyelitis 615 Serratia marcescens Respiratory USA:Virginia; South Korea; Mexico Homo sapiens Septicaemia; abscesses; burn infections; osteomyelitis 618 Serratia odorifera Homo sapiens Septicaemia; abscesses; burn infections; osteomyelitis 82996 Serratia plymuthica Homo sapiens Septicaemia; abscesses; burn infections; osteomyelitis 399741 Serratia proteamaculans 568 NA NA Homo sapiens Septicaemia; abscesses; burn infections; osteomyelitis 61652 Serratia rubidaea Homo sapiens Septicaemia; abscesses; burn infections; osteomyelitis 488142 Serratia sp. SCBI NA NA Homo sapiens Entomopathogenic to insects when in association with Caenorhabditis worms or by direct injection to insect haemocoel. 38313 Shewanella algae human clinical samples Japan aplysina insularis; haliotis diversicolor; Homo sapiens; sciaenops ocellatus Abdominal sepsis; meningitis; bacteraemia 319224 Shewanella putrefaciens CN-32 NA NA NA Abdominal sepsis; meningitis; bacteraemia 351745 Shewanella sp. W3-18-1 marine sediments at a depth of 630 m. Pacific Ocean NA Cellulitis 344609 Shigella boydii CDC 3083-94 12-year-old boy USA: Arizona Homo sapiens Dysentery 300268 Shigella boydii Sb227 epidemic in China in the 1950s China Homo sapiens Dysentery 621 Shigella boydii strain ATCC 9210 Cases of diarrhea NA Homo sapiens Dysentery 754093 Shigella dysenteriae 1617 Guatemala Homo sapiens Dysentery 300267 Shigella dysenteriae Sd197 epidemic in China in the 1950s China Homo sapiens Dysentery 591020 Shigella flexneri 2002017 NA NA Homo sapiens Dysentery 198215 Shigella flexneri 2a str. 2457T NA NA Homo sapiens Dysentery 198214 Shigella flexneri 2a str. 301 patient China: Beijing Homo sapiens Dysentery 373384 Shigella flexneri 5 str. 8401 NA NA Homo sapiens Dysentery 1435046 Shigella flexneri G1663 stool sample NA Homo sapiens Dysentery 300269 Shigella sonnei Ss046 epidemic in China in the 1950s China Homo sapiens Dysentery 624 Shigella sonnei strain FDAARGOS_90 Stool USA:DC Homo sapiens Dysentery 624 Shigella sonnei strain FORC_011 Stool South Korea Homo sapiens Dysentery 177972 Shuttleworthia satelles human oral cavity UK Homo sapiens endocarditis 72 Simonsiella muelleri human oral cavity Homo sapiens periodontitis 84109 Slackia exigua human oral lesion Japan Homo sapiens Periodontitis 40543 Sneathia sanguinegens human clinical samples Homo sapiens postpartum and neonatal bacteremia 102148 Solobacterium moorei feces Japan Homo sapiens bacteremia 1538644 Sphingobacterium sp. ML3W study of microbial communities on bat wings USA: Pennsylvania Bat; Myotis lucifugus Unknown 152682 Sphingomonas melonis yellow Spanish melon fruits Italy Apis cerana; Homo sapiens Unknown 13689 Sphingomonas paucimobilis human clinical specimens; the hospital environment amanita Muscaria; Anopheles stephensi; Homo sapiens Septicaemia; UTI; wound infections; CAPD peritonitis 327691 Sphingomonas rhizogenes soil Homo sapiens Unknown 402029 Spirillum minus Homo sapiens Rat-bite fever 1114980 Spiroplasma atrichopogonis strain GNAT3597 NA USA: Salisbury; MD Atrichopogon sp. plant disease 362837 Spiroplasma cantharicola strain CC-1 NA NA Beetle; Cantharis Unknown 743698 Spiroplasma eriocheiris CCTCC M 207170 strain DSM 21848 NA China Eriocheir sinensis Unknown 216942 Spiroplasma litorale strain TN-1 campground USA: Ocracoke Island; NC Horsefly; Tabanus nigrovittatus Unknown 216946 Spiroplasma turonicum strain TAB4c horsefly France: Indre-et-Loire; Touraine Common Equus caballusFly; Haematopota pluvialis Unknown 985762 Staphylococcus agnetis strain 908 infected leg joint associated with lameness Fayetteville; AR Gallus gallus infection 1229492 Staphylococcus aureus 08BA02176 soft tissue infection of skin Canada Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 1321369 Staphylococcus aureus Bmb9393 patient with blood stream infection Brazil: Rio de Janeiro Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 273036 Staphylococcus aureus RF122 NA NA Homo sapiens Mastitis 1280 Staphylococcus aureus strain 502A human clinical samples USA: New York City; Colombia; Brazil:Florianopolis; USA:DC; Brazil: Sao Paulo; USA:Michigan; China: Shenzhen; USA:North Dakota; United Kingdom; Japan; USA:Massachusetts; Netherlands: Bilthoven; Switzerland: Geneva; Germany; Nigeria: Federal Medical Center; South Africa: Stev Bieko Academic hospital; USA:Texas; Belgium; Venezuela; China: Chongqing Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 46170 Staphylococcus aureus subsp. aureus human clinical samples Brazil: Teresina; PI; Greece; Belgium; Switzerland; USA; Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 1123523 Staphylococcus aureus subsp. aureus 11819-97 skin abscess Denmark Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 1392476 Staphylococcus aureus subsp. aureus 6850 patient with a complicated S NA Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 1155084 Staphylococcus aureus subsp. aureus 71193 NA NA Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 93062 Staphylococcus aureus subsp. aureus COL NA NA Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 1241616 Staphylococcus aureus subsp. aureus DSM 20231 Clinical NA Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 681288 Staphylococcus aureus subsp. aureus ED98 broiler Gallus gallus Northern Ireland Gallus gallus Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 46170 Staphylococcus aureus subsp. aureus Gv69 hospitalized patient presented with wound infection Teresina PI Brazil Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 1074252 Staphylococcus aureus subsp. aureus HO 5096 0412 NA NA Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 359787 Staphylococcus aureus subsp. aureus JH1 patient undergoing vancomycin treatment Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 359786 Staphylococcus aureus subsp. aureus JH9 patient undergoing vancomycin treatment Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 282458 Staphylococcus aureus subsp. aureus MRSA252 hospital-acquired United Kingdom Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 282459 Staphylococcus aureus subsp. aureus MSSA476 community acquired United Kingdom Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 196620 Staphylococcus aureus subsp. aureus MW2 community acquired USA: North Dakota Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 158878 Staphylococcus aureus subsp. aureus Mu50 the pus of a Japanese male baby with a surgical wound infection that did not respond to vancomycin Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 158879 Staphylococcus aureus subsp. aureus N315 pharyngeal smear of a Japanese patient Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 93061 Staphylococcus aureus subsp. aureus NCTC 8325 NA NA Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 1343064 Staphylococcus aureus subsp. aureus ST772-MRSA-V strain DAR4145 Blood Sample India: Mumbai Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 1006543 Staphylococcus aureus subsp. aureus T0131 87-year-old patient No.3 Central Hospital in Tianjin; China Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 548473 Staphylococcus aureus subsp. aureus TCH60 NA NA Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 451515 Staphylococcus aureus subsp. aureus USA300_FPR3757 NA NA Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 451516 Staphylococcus aureus subsp. aureus USA300_TCH1516 NA NA Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 546342 Staphylococcus aureus subsp. aureus str. JKD6008 clinical isolate NA Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 426430 Staphylococcus aureus subsp. aureus str. Newman NA NA Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 29388 Staphylococcus capitis strain CR03 skin of human Belgium Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 72758 Staphylococcus capitis subsp. capitis strain AYP1020 Blood Australia Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 29380 Staphylococcus caprae Culex quinquefasciatus; Homo sapiens; Phaseolus vulgaris; sphagnum fallax Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 29382 Staphylococcus cohnii Culex quinquefasciatus; cytisus striatus; Homo sapiens; lymantria dispar; rhodnius colombiensis; sardinella longiceps Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 176280 Staphylococcus epidermidis ATCC 12228 NA NA Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 176279 Staphylococcus epidermidis RP62A patient with intravascular catheter-associated sepsis NA Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 279808 Staphylococcus haemolyticus JCSC1435 Japanese inpatient at Juntendo Hospital; Tokyo; Juntendo Hospital Tokyo Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 1283 Staphylococcus haemolyticus strain Sh29/312/L2 blood Brazil: Sao Paulo Homo sapiens Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 1290 Staphylococcus hominis acacia senegal; Anopheles stephensi; Bos taurus; Canis lupus; Canis lupus familiaris; Culex quinquefasciatus; Dendroctonus rufipennis; Homo sapiens; mimulus aurantiacus; oryctolagus cuniculus; Phaseolus vulgaris; solenopsis invicta Bacteraemia; wound infection; endocarditis; catheter-related sepsis; UTI; toxic shock syndrome; food poisoning; eye infection; osteomyelitis 1284 Staphylococcus hyicus ATCC 11249 NA NA Homo sapiens exudative epidermatitis 1285 Staphylococcus intermedius Canis lupus; Canis lupus familiaris; Equus caballus; Felis catus; Homo sapiens; Sus scrofa; Sus scrofa domesticus infection 42858 Staphylococcus lentus Canis lupus; Canis lupus familiaris; Homo sapiens; lymantria dispar; Ovis aries infection 698737 Staphylococcus lugdunensis HKU09-01 patient suffering from skin and soft tissue infection Homo sapiens infection 28035 Staphylococcus lugdunensis strain FDAARGOS_141 Right elbow swab USA:DC Homo sapiens infection 28035 Staphylococcus lugdunensis strain FDAARGOS_143 Abscess USA:DC Homo sapiens infection 214473 Staphylococcus nepalensis goats Himalayan region Capra hircus; Homo sapiens; Sus scrofa infection 45972 Staphylococcus pasteuri human; animal; food specimens France asobara tabida; bemisia tabaci; Bos taurus; Brassica rapa; costelytra Zealandica; elaeis guineensis; Homo sapiens; Nicotiana glauca; Nicotiana tabacum; panax ginseng; Phaseolus vulgaris; Populus euphratica; rattus norvegicus; sphagnum fallax; sphagnum magellanicum; vitis vinifera infection 170573 Staphylococcus pettenkoferi human clinical samples Germany Brassica rapa; Homo sapiens infection 937773 Staphylococcus pseudintermedius HKU10-03 skin swab of a dog suffering from canine pyoderma. Canis lupus familiaris infection 29385 Staphylococcus saprophyticus strain FDAARGOS_137 Urine clean catch USA:DC Homo sapiens cystitis 29385 Staphylococcus saprophyticus strain FDAARGOS_168 Urine USA:DC Homo sapiens cystitis 342451 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 human urine specimen NA Homo sapiens Urinary tract infection 1296 Staphylococcus sciuri amblyomma cajennense; Bos taurus; Canis lupus; Canis lupus familiaris; Culex quinquefasciatus; Equus caballus; gallus gallus; harmonia axyridis; Homo sapiens; mauremys mutica; Nicotiana tabacum; Solanum tuberosum Urinary tract infection 1295 Staphylococcus schleiferi strain 1360-13 Skin; Ear USA: Philadelphia Canis lupus familiaris endocarditis 1286 Staphylococcus simulans strain FDAARGOS_124 Peripheral blood USA:DC Homo sapiens endocarditis 61015 Staphylococcus succinus choristoneura fumiferana; Culex quinquefasciatus; Homo sapiens; riptortus clavatus Unknown 1292 Staphylococcus warneri Bos taurus; Culex quinquefasciatus; gallus gallus; Homo sapiens; medicago truncatula; Musca domestica; Nicotiana glauca; Phaseolus vulgaris; prunus dulcis; Sus scrofa; Zea mays infection 522373 Stenotrophomonas maltophilia K279a blood infection NA Homo sapiens Bacteraemia; meningitis; wound infection; UTI; pneumonia 40324 Stenotrophomonas maltophilia strain ISMMS2R blood USA: New York; NY Homo sapiens Bacteraemia; meningitis; wound infection; UTI; pneumonia 40324 Stenotrophomonas maltophilia strain ISMMS3 blood USA: New York; NY Homo sapiens Bacteraemia; meningitis; wound infection; UTI; pneumonia 519441 Streptobacillus moniliformis DSM 12112 case of rat bite fever NA Homo sapiens Rat bite fever 1326 Streptococcus acidominimus Homo sapiens Pneumonia; pericarditis; meningitis 1417990 Streptococcus agalactiae 138 kidney of diseased fish NA Fish; Tilapia; Oreochromis niloticus infections 208435 Streptococcus agalactiae 2603V/R NA NA Homo sapiens Septicemia; Pneumonia; Meningitis 205921 Streptococcus agalactiae A909 NA NA Homo sapiens Septicemia; Pneumonia; Meningitis 1427374 Streptococcus agalactiae CNCTC 10/84 NA USA: Atlanta; GA Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 1203670 Streptococcus agalactiae GD201008-001 tilapia China Fish; Tilapia; Oreochromis niloticus Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 1318615 Streptococcus agalactiae ILRI112 milk of camel from Kenya NA Camel; Camelini Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 211110 Streptococcus agalactiae NEM316 case of fatal septicemia NA Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 1311 Streptococcus agalactiae human clinical samples USA: Salinas; California; Brazil:Rio de Janeiro; China: Guangxi Province; Canada: Greater Toronto Area; Singapore; USA: Houston; USA: San Antonio Canis lupus familiaris breed Parson Russell Terrier and Chihuahua mix Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 1328 Streptococcus anginosus strain J4211 Hospital isolate USA: San Antonio Homo sapiens Abscess 113107 Streptococcus australis Homo sapiens meningitis 1335 Streptococcus bovis Bos taurus; Homo sapiens endocarditis 1329 Streptococcus canis Bos taurus; Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 76860 Streptococcus constellatus feces Homo sapiens Abscesses; bacteraemia; endocarditis; pharyngitis 45634 Streptococcus cristatus human throat and oral cavity UK Homo sapiens Bacteraemia; endocarditis; wound infection 1317 Streptococcus downei Homo sapiens Unknown 663954 Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 NA NA Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 486410 Streptococcus dysgalactiae subsp. equisimilis GGS_124 NA NA Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 553482 Streptococcus equi subsp. equi 4047 NA NA NA Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 40041 Streptococcus equi subsp. zooepidemicus NA NA Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 1051072 Streptococcus equi subsp. zooepidemicus ATCC 35246 dead Sus scrofa in Sichuan province; China China: Sichuan province Sus scrofa Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 1403449 Streptococcus equi subsp. zooepidemicus CY NA China: Nanjing Sus scrofa Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 1335 Streptococcus equinus Bos taurus; camelus bactrianus; camelus dromedarius; Homo sapiens Endocarditis; CAPD peritonitis 637909 Streptococcus gallolyticus UCN34 patient NA Homo sapiens Endocarditis; CAPD peritonitis 467705 Streptococcus gordonii str. Challis substr. CH1 NA NA Homo sapiens Bacteraemia; endocarditis; wound infection 1302 Streptococcus gordonii strain KCOM 1506 (= ChDC B679) Acute pulpitis Korea: Gwangju Homo sapiens Bacteraemia; endocarditis; wound infection 68892 Streptococcus infantis human clinical samples Japan Homo sapiens Endocarditis; CAPD peritonitis 1318633 Streptococcus iniae SF1 NA China Fish Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 1338 Streptococcus intermedius strain KCOM 1545 (= ChDC B718) endodontic infection South Korea: Gwangju Homo sapiens infection 33040 Streptococcus milleri Homo sapiens infection 365659 Streptococcus mitis B6 hospital Germany: Bochum Homo sapiens Bacteraemia; endocarditis; wound infection 28037 Streptococcus mitis strain KCOM 1350 (=ChDC B183) Mandibular osteomyelitis Korea: Gwangju Homo sapiens Bacteraemia; endocarditis; wound infection 28037 Streptococcus mitis strain SVGS_061 blood USA: Houston; Texas; MD Anderson Cancer Center Homo sapiens Bacteraemia; endocarditis; wound infection 1198676 Streptococcus mutans GS-5 NA NA Homo sapiens Dental caries 1155071 Streptococcus mutans LJ23 NA NA Homo sapiens Dental caries 511691 Streptococcus mutans NN2025 NA Japan Homo sapiens Dental caries; Endocarditis 210007 Streptococcus mutans UA159 child with active dental caries NA Homo sapiens Dental caries 1303 Streptococcus oralis Homo sapiens Bacteraemia; endocarditis; wound infection 1318 Streptococcus parasanguinis human clinical samples Homo sapiens Bacteraemia; endocarditis; wound infection 197614 Streptococcus pasteurianus blood Homo sapiens septicemia 68891 Streptococcus peroris human clinical samples Homo sapiens infection 189423 Streptococcus pneumoniae 670-6B Spain Spain Homo sapiens Pneumonia 488221 Streptococcus pneumoniae 70585 NA NA Homo sapiens Pneumonia 574093 Streptococcus pneumoniae AP200 the cerebrospinal fluid of a patient with meningitis Italy Homo sapiens Pneumonia 561276 Streptococcus pneumoniae ATCC 700669 NA NA Homo sapiens Pneumonia; Meningitis; Bacteremia 516950 Streptococcus pneumoniae CGSP14 NA NA Homo sapiens Pneumonia 373153 Streptococcus pneumoniae D39 strain D39 NA Homo sapiens Pneumonia 512566 Streptococcus pneumoniae G54 respiratory sample Genova Italy Homo sapiens Pneumonia 487214 Streptococcus pneumoniae Hungary19A-6 NA NA Homo sapiens Pneumonia 488222 Streptococcus pneumoniae JJA NA NA Homo sapiens Pneumonia 488223 Streptococcus pneumoniae P1031 NA NA Homo sapiens Pneumonia 525381 Streptococcus pneumoniae TCH8431/19A NA NA Homo sapiens Pneumonia 170187 Streptococcus pneumoniae TIGR4 the blood of a 30 year old male patient Kongsvinger; Norway Homo sapiens Pneumonia; Meningitis; Bacteremia; Sinusitis; Otitis media; Conjunctivitis 487213 Streptococcus pneumoniae Taiwan19F-14 NA NA Homo sapiens Pneumonia 1054460 Streptococcus pseudopneumoniae IS7493 sputum of a patient with human immunodeficiency virus (HIV) who had documented pneumonia Canada: Ontario Homo sapiens Pneumonia 1235829 Streptococcus pyogenes A20 Necrotizing fasciitis patient Tainan Provincial Hospital ROC Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 487215 Streptococcus pyogenes Alab49 impetigo lesion USA: Alabama Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 1048264 Streptococcus pyogenes HKU QMH11M0907901 blood from scarlet fever outbreak China: Hong Kong Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 1150773 Streptococcus pyogenes JRS4 NA NA Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 1207470 Streptococcus pyogenes M1 476 streptococcal toxic shock syndrome case (STSS) during pregnancy Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 160490 Streptococcus pyogenes M1 GAS patient with a wound infection NA Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 1314 Streptococcus pyogenes M23ND NA Japan Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 286636 Streptococcus pyogenes MGAS10394 child with pharyngitis Pennsilvania Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 1010840 Streptococcus pyogenes MGAS1882 NA NA Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 471876 Streptococcus pyogenes NZ131 patient with acute glomerulonephritis NA Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 193567 Streptococcus pyogenes SSI-1 toxic-shock patient Japan Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 1437008 Streptococcus pyogenes STAB1102 NA NA Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 1440772 Streptococcus pyogenes STAB901 NA NA Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 1437007 Streptococcus pyogenes STAB902 NA NA Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 160491 Streptococcus pyogenes str. Manfredo patient USA: Chicago Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 1314 Streptococcus pyogenes human clinical samples Canada:Ontario; France; USA:DC; Czech Republic:Prague; Hong Kong; USA: St. Louis; MO; USA: Ann Arbor; MI; Japan: Hikone-shi Homo sapiens Pharyngitis; bacteraemia; pyogenic infection; necrotizing infection; septic arthritis; UTI; glomerulonephritis; meningitis 1304 Streptococcus salivarius strain JF oral China: Xintai Homo sapiens Bacteraemia; endocarditis; wound infection 388919 Streptococcus sanguinis SK36 human dental plaque NA Homo sapiens Endocarditis 1305 Streptococcus sanguinis strain 2908 human throat Norway Homo sapiens Bacteraemia; endocarditis; wound infection 176090 Streptococcus sinensis blood Homo sapiens endocarditis 1310 Streptococcus sobrinus Homo sapiens Dental caries; endocarditis 1702171 Streptococcus sp. FDAARGOS_146 Vaginal swab USA: DC Homo sapiens infections 1316409 Streptococcus sp. HSISB1 ileostomy effluent evening sample obtained from a 79 year-old male ileostomist plated on Mitis-salivarius agar Netherlands Homo sapiens infections 1316408 Streptococcus sp. HSISM1 ileostomy effluent evening sample obtained from a 79 year-old male ileostomist plated on Mitis-salivarius agar Netherlands Homo sapiens infections 1316410 Streptococcus sp. HSISS1 ileostomy effluent evening sample obtained from a 79 year-old male ileostomist plated on Mitis-salivarius agar Netherlands Homo sapiens infections 1316411 Streptococcus sp. HSISS2 ileostomy effluent evening sample obtained from a 79 year-old male ileostomist plated on Mitis-salivarius agar Netherlands Homo sapiens infections 1316412 Streptococcus sp. HSISS3 ileostomy effluent evening sample obtained from a 79 year-old male ileostomist plated on Mitis-salivarius agar Netherlands Homo sapiens infections 1156431 Streptococcus sp. I-G2 ileal fluid South Korea Homo sapiens infections 1156433 Streptococcus sp. I-P16 ileal fluid South Korea Homo sapiens infections 1419814 Streptococcus sp. VT 162 saliva of patient with ALL NA Homo sapiens infections 712633 Streptococcus sp. oral taxon 431 NA USA: Bethesda; MD Homo sapiens infections 391295 Streptococcus suis 05ZYH33 NA NA Homo sapiens Meningitis; Endocarditis; Septicemia; Arthritis 1214179 Streptococcus suis 6407 Sus scrofa Denmark Sus scrofa Meningitis; Endocarditis; Septicemia; Arthritis 391296 Streptococcus suis 98HAH33 NA NA Homo sapiens Meningitis; Endocarditis; Septicemia; Arthritis 568814 Streptococcus suis BM407 clinical isolate NA Homo sapiens Meningitis; Arthritis; Pneumonia 423211 Streptococcus suis GZ1 NA NA Homo sapiens Meningitis; Arthritis; Pneumonia 218494 Streptococcus suis P1/7 NA NA Homo sapiens Meningitis; Endocarditis; Septicemia; Arthritis 1246365 Streptococcus suis SC070731 NA NA Sus scrofa Meningitis 568813 Streptococcus suis SC84 clinical isolate NA Homo sapiens Meningitis; Arthritis; Pneumonia 1276647 Streptococcus suis TL13 NA China Sus scrofa Meningitis; Arthritis; Pneumonia 1380773 Streptococcus suis YB51 NA NA Sus scrofa domesticus Meningitis; Arthritis; Pneumonia 1307 Streptococcus suis Ziyang City China: Ziyang City; Sichuan Province; Canada Sus scrofa Meningitis; Arthritis; Pneumonia 218495 Streptococcus uberis 0140J clinical bovine mastitis case NA Bos taurus Mastitis 1343 Streptococcus vestibularis human oral cavity UK Homo sapiens; sialia sialis Bacteraemia; endocarditis; wound infection 680198 Streptomyces scabiei 87.22 NA NA plants Scab disease 40545 Sutterella wadsworthensis appendiceal and peritoneal fluid specimens USA Homo sapiens Appendicitis; peritonitis; abscesses; osteomyelitis 13276 Suttonella indologenes Homo sapiens Endocarditis; eye infection 651822 Synergistetes bacterium SGP1 NA NA Homo sapiens periodontitis 203275 Tannerella forsythia ATCC 43037 human periodontal pocket Massachusetts Homo sapiens Periodontitis 466 Tatlockia maceachernii (Legionella) Homo sapiens pneumonia 451 Tatlockia micdadei lung tissue Homo sapiens pneumonia 82987 Tatumella ptyseos human clinical samples United States; Canada; Puerto Rico Ananas comosus; Homo sapiens; vitis vinifera Bacteraemia; UTI 1091495 Taylorella asinigenitalis 14/45 3 year old Ardennes stallion; pre-breeding tests Sweden Equus caballus equine metritis (CEM); 1008459 Taylorella asinigenitalis MCE3 donkey jack; genital tract France: stud farm in the Loir-et-Cher Donkey metritis 1091497 Taylorella equigenitalis 14/56 stallion; pre-export checks United Arab Emirates Equus caballus equine metritis (CEM); 743973 Taylorella equigenitalis ATCC 35865 NA NA Equus caballus Contagious equine metritis 669041 Tenacibaculum dicentrarchi strain AY7486TD skin lesion Chile:Aysen Atlantic Salmon; Salmo salar Tenacibaculosis 377629 Teredinibacter turnerae T7901 the gills of the wood-boring mollusc (Bivalvia:Teredinidae) and may potentially be useful Bivalvia; Teredinidae Unknown 217202 terrahaemophilus aromaticivorans petroleum sludge Homo sapiens oral species 586416 Terribacillus aidingensis strain MP602 Cryptomeria fortunei China: Lin'An Cryptomeria fortunei Unknown 269800 Thermobifida fusca YX NA NA Homo sapiens Shiitake mushroom dermatitis; Farmer's lung disease disease 391009 Thermosipho melanesiensis BI429 the gills of Bathymodiolus brevior; a deep-seamussel NA Bivalve; Bathymodiolus brevior Unknown 59892 Treponema amylovorum human periodontal lesion Switzerland Homo sapiens periodontitis 157 Treponema carateum Homo sapiens Syphilis 243275 Treponema denticola ATCC 35405 human periodontal pocket NA Homo sapiens Periodontitis 53418 Treponema lecithinolyticum deep periodontal lesions Switzerland Homo sapiens peridontitis 51160 Treponema maltophilum human periodontal lesions Switzerland Homo sapiens peridontitis 58231 Treponema medium human subgingival dental plaque. Japan Homo sapiens peridontitis 455434 Treponema pallidum subsp. pallidum SS14 patient with secondary syphilis NA Homo sapiens Syphilis 666714 Treponema pallidum subsp. pallidum str. Chicago NA NA Homo sapiens Syphilis 686990 Treponema pallidum subsp. pallidum str. Mexico A NA NA Homo sapiens Syphilis 243276 Treponema pallidum subsp. pallidum str. Nichols neurosyphilitic patient NA Homo sapiens Syphilis 1095955 Treponema pallidum subsp. pallidum str. Sea 81-4 NA NA Homo sapiens syphilis 545776 Treponema paraluiscuniculi Cuniculi A NA NA Homo sapiens; Oryctolagus cuniculus Rabbit syphilis 221027 Treponema putidum human clinical samples Switzerland Homo sapiens periodontitis and acute necrotizing ulcerative gingivitis 53419 Treponema socranskii Homo sapiens periodontitis 69710 Treponema vincentii Homo sapiens periodontitis 218496 Tropheryma whipplei TW08/27 the cerebrospinal fluid a woman who had suffered severe weight loss Germany Homo sapiens Whipple's disease 203267 Tropheryma whipplei str. Twist NA NA Homo sapiens Whipple's disease 42777 Tsukamurella inchonensis Homo sapiens infection 2061 Tsukamurella paurometabola Homo sapiens infection 47312 Tsukamurella pulmonis Homo sapiens infection 57704 Tsukamurella tyrosinosolvens Apis cerana; cytisus scoparius; Homo sapiens infection 1661 Trueperella pyogenes animals China:chongqing; USA: New York Bison bonasus; Bos taurus;Capra hircus; Equus caballus; gazella subgutturosa; Homo sapiens; Naemorhedus goral; Odocoileus virginianus; Sus scrofa; Sus scrofa domesticus sepsis 42094 Ureaplasma diversum strain ATCC 49782 Female bovine urogenital tract Canada: Ontario Bos taurus placentitis; fetal alveolitis; abortion 505682 Ureaplasma parvum serovar 3 str. ATCC 27815 NA NA Homo sapiens Urinary tract infection; respritory tract infection 273119 Ureaplasma parvum serovar 3 str. ATCC 700970 NA Denmark: Aarhus Homo sapiens Urinary tract infection; respritory tract infection 565575 Ureaplasma urealyticum serovar 10 str. ATCC 33699 NA NA Homo sapiens Urinary tract infection; respritory tract infection 2738 Vagococcus fluvialis Culex quinquefasciatus; Homo sapiens infection 184870 Varibaculum cambriense Homo sapiens Abscesses 34073 Variovorax paradoxus Beta vulgaris; boehmeria nivea; Brassica napus; Homo sapiens; lemna minor; lolium perenne; paeonia ostii; pisum sativum periodontitis 39777 Veillonella atypica Homo sapiens Abscesses; bacteraemia 39778 Veillonella dispar Homo sapiens Abscesses; bacteraemia 1316254 Veillonella parvula HSIVP1 ileostomy effluent evening sample obtained from a 79 year-old male ileostomist plated on Veillonella selective agar Netherlands Homo sapiens Abscesses; bacteraemia 103892 Veillonella ratti Homo sapiens periodontitis 663 Vibrio alginolyticus aplysina lacunosa; crassostrea gigas; haliotis corrugata; hippocampus guttulatus; hippocampus ingens; Homo sapiens; lateolabrax japonicus; maja brachydactyla; mussismilia hispida; palythoa caribaeorum; palythoa variabilis; penaeus monodon; scophthalmus maximus; sphoeroides annulatus; trachinotus blochii Wound infection; ear infection 55601 Vibrio anguillarum NB10 Rainbow trout Gulf Rainbow trout; Onchorhynchus mykiss infection 338187 Vibrio campbellii ATCC BAA-1116 NA NA Homo sapiens Vibriosis 666 Vibrio cholerae 2012EL-2176 Haiti was found to be resistant to additional antimicrobials compared with previous isolates from the ongoing outbreak Haiti Homo sapiens Cholera 1093790 Vibrio cholerae H1 passed stool Haiti Homo sapiens Cholera 579112 Vibrio cholerae M66-2 outbreak Makassar area of Indonesia Homo sapiens Cholera 593588 Vibrio cholerae MJ-1236 NA Matlab; Bangladesh Homo sapiens Cholera 1420885 Vibrio cholerae MS6 diarrheal patient; was named MS6 Homo sapiens Cholera 243277 Vibrio cholerae O1 biovar El Tor str. N16961 the classical biotype due to hemolysin production Bangladesh Homo sapiens Cholera 686 Vibrio cholerae O1 biovar El Tor strain FJ147 physical China: Fujian Homo sapiens Cholera 1224154 Vibrio cholerae O1 str. Inaba G4222 cholera patient stool sample South Africa: Gauteng Homo sapiens Cholera 345073 Vibrio cholerae O395 NA NA Homo sapiens Cholera 345073 Vibrio cholerae O395 (Prj:32853) NA NA Homo sapiens Cholera 675 Vibrio cincinnatiensis Homo sapiens Bacteraemia 85581 Vibrio damsela Homo sapiens Bacteraemia 676 Vibrio fluvialis strain ATCC 33809 NA Bangladesh:Dacca Homo sapiens infection 29494 Vibrio furnissii Homo sapiens bacteremia 673 Vibrio hollisae stool Homo sapiens diarrhea 28172 Vibrio metschnikovii Homo sapiens infection 674 vibrio mimicus etroplus suratensis; Homo sapiens; lutjanus guttatus Diarrhoea; septicaemia 1338032 Vibrio parahaemolyticus O1:K33 str. CDC_K4557 oyster USA: LA Homo sapiens Diarrhoea; septicaemia 1338034 Vibrio parahaemolyticus O1:Kuk str. FDA_R31 stool USA: LA Homo sapiens Diarrhoea; septicaemia 223926 Vibrio parahaemolyticus RIMD 2210633 NA Osaka Japan NA Diarrhoea; septicaemia 670 Vibrio parahaemolyticus strain FORC_008 finespotted flounder South Korea: Gyeongnam Finespotted flounder Diarrhoea; septicaemia 575788 Vibrio splendidus LGP32 NA NA NA Vibriosis 1051646 Vibrio tubiashii ATCC 19109 Larvae from hard clams (Mercenaria mercenaria) USA: Long Island Sound; Connecticut Mercenaria mercenaria Unknown 216895 Vibrio vulnificus CMCP6 NA NA NA Gastroenteritis; Septicemia 196600 Vibrio vulnificus YJ016 Taiwan Taiwan NA Gastroenteritis; Septicemia 672 Vibrio vulnificus strain 93U204 NA Taiwan: Kaohsiung Tilapia; Oreochromis sp. septicemia; wouind infections 672 Vibrio vulnificus strain ATL 6-1306 NA USA Homo sapiens septicemia; wouind infections 672 Vibrio vulnificus strain FORC_009 Stool sample South Korea: Masan Homo sapiens septicemia; wouind infections 172901 Victivallis vadensis Homo sapiens septicemia; wouind infections 1014 Weeksella virosa Homo sapiens Peritonitis 1583 Weissella confusa Homo sapiens Endocarditis 759620 Weissella ceti strain WS08 brain Brazil Rainbow trout; Onchorhynchus mykiss Unknown 36870 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis NA NA Tsetse fly; Glossina brevipalpis Unknown 246273 Wolbachia endosymbiont of Cimex lectularius wCle NA NA Cimex lectularius JESC Unknown 570417 Wolbachia endosymbiont of Culex quinquefasciatus Pel the preblastoderm embryos of the Pelstrain of Culex quinquefasciatus mosquitoes NA Mosquito; Culex quinquefasciatus Unknown 163164 Wolbachia endosymbiont of Drosophila melanogaster NA NA Fruit fly; Drosophila melanogaster Unknown 125593 Wolbachia endosymbiont of Trichogramma pretiosum the submitted GenBank assembly (see linked project PRJNA168121) Peru: Puira Valley Wasp; Trichogramma pretiosum Unknown 292805 Wolbachia endosymbiont strain TRS of Brugia malayi NA NA Nematode; Brugia malayi Unknown 29447 Xanthomonas albilineans strain GPE PC73 NA Guadeloupe NA Leaf scald 190486 Xanthomonas axonopodis pv. citri str. 306 NA NA NA Citrus canker 1437877 Xanthomonas axonopodis pv. dieffenbachiae LMG 695 NA Brazil Anthurium sp. Anthurium bacterial blight 316273 Xanthomonas campestris pv. vesicatoria str. 85-10 NA NA plants; Homo sapiens Bacterial spot; Bacteraemia 1137651 Xanthomonas citri subsp. citri Aw12879 NA NA NA Citrus canker 863365 Xanthomonas hortorum pv. carotae str. M081 NA NA NA Bacterial blight 291331 Xanthomonas oryzae pv. Oryzae KACC 10331 NA NA NA Bacterial blight 342109 Xanthomonas oryzae pv. Oryzae MAFF 311018 NA NA NA Bacterial blight 360094 Xanthomonas oryzae pv. Oryzae PXO99A NA NA NA Bacterial blight 452922 Xenophilus aerolata Homo sapiens Unknown 406817 Xenorhabdus nematophila ATCC 19061 NA NA NA Bacteremia 160492 Xylella fastidiosa 9a5c pathogenic strain (8.1b) France NA Citrus variegated chlorosis 405440 Xylella fastidiosa M12 NA NA NA Citrus variegated chlorosis 263819 Yersinia aleksiciae strain 159 feces Finland Homo sapiens Unknown 634 Yersinia bercovieri NA Unknown 1262467 Yersinia Enterocolitica (type O:2) str. YE3094/96 animal isolate NA Homo sapiens Enterocolitis; soft tissue infections; mesenteric lymphadenitis 1262466 Yersinia Enterocolitica (type O:3) str. YE12/03 bio-serotype O:3 and was isolated from human faecal matter NA Homo sapiens Enterocolitis; soft tissue infections; mesenteric lymphadenitis 1262462 Yersinia Enterocolitica (type O:5) str. YE53/03 bio-serotype 2A and was isolated from human faecal matter NA Homo sapiens Enterocolitis; soft tissue infections; mesenteric lymphadenitis 1262465 Yersinia Enterocolitica (type O:5;27) str. YE149/02 bio-serotype O:5;27 and was isolated from a sheep abattoir NA Ovis aries Enterocolitis; soft tissue infections; mesenteric lymphadenitis 1262463 Yersinia Enterocolitica (type O:9) str. YE212/02 Sus scrofa abbatoir NA Sus scrofa Enterocolitis; soft tissue infections; mesenteric lymphadenitis 1262464 Yersinia Enterocolitica (type O:9) str. YE56/03 human faecal matter NA Homo sapiens Enterocolitis; soft tissue infections; mesenteric lymphadenitis 630 Yersinia Enterocolitica human clinical samples USA; Belgium Homo sapiens Enterocolitis; soft tissue infections; mesenteric lymphadenitis 1443113 Yersinia Enterocolitica LC20 feces China: Zhejiang Norway rat; Rattus norvegicus Enterocolitis; soft tissue infections; mesenteric lymphadenitis 393305 Yersinia Enterocolitica subsp. Enterocolitica 8081 NA NA Homo sapiens Enterocolitis; soft tissue infections; mesenteric lymphadenitis 930944 Yersinia Enterocolitica subsp. palearctica Y11 humans and asymptomatic slaughter Sus scrofas Europe Northern Asia Homo sapiens Enterocolitis; soft tissue infections; mesenteric lymphadenitis 29484 yersinia frederiksenii aesculus hippocastanum; costelytra Zealandica; Homo sapiens Enterocolitis; soft tissue infections; mesenteric lymphadenitis 631 yersinia intermedia Homo sapiens; Ictalurus punctatus Enterocolitis; soft tissue infections; mesenteric lymphadenitis 28152 yersinia kristensenii Homo sapiens; sphagnum fallax Enterocolitis; soft tissue infections; mesenteric lymphadenitis 33060 Yersinia mollaretii Homo sapiens; sphagnum fallax Enterocolitis; soft tissue infections; mesenteric lymphadenitis 1345710 Yersinia pestis 1045 NA Azerbaijan: Apsheron Pen. Homo sapiens Plague 1345703 Yersinia pestis 1412 NA Georgia: Ninotsminda Homo sapiens Plague 1345704 Yersinia pestis 1413 NA Georgia: Ninotsminda Homo sapiens Plague 1345705 Yersinia pestis 1522 NA Armenia: Shirak Province Homo sapiens Plague 1345702 Yersinia pestis 2944 NA Russia: Kabardino-Balkaria Homo sapiens Plague 1345706 Yersinia pestis 3067 NA Georgia: Ninotsminda Homo sapiens Plague 1345707 Yersinia pestis 3770 NA Georgia: Ninotsminda Homo sapiens Plague 1345701 Yersinia pestis 790 NA Kyrgyzstan Homo sapiens Plague 1345708 Yersinia pestis 8787 NA Georgia: Ninotsminda Homo sapiens Plague 1035377 Yersinia pestis A1122 California Ground Squirrel (Spermophilus beecheyi) USA: California Otospermophilus beecheyi; Homo sapiens Plague 349746 Yersinia pestis Angola NA NA Homo sapiens Bubonic plague 360102 Yersinia pestis Antiqua Human clinical sample Republic of the Congo Homo sapiens Bubonic plague 214092 Yersinia pestis CO92 patient who died of pneumonic plague after acquiring the disease from an infected cat USA Homo sapiens Bubonic plague 637382 Yersinia pestis D106004 new plague focus Yulong County China Homo sapiens Bubonic plague 637385 Yersinia pestis D182038 Apodemus chevrieri (Chevrier's field mouse) Yunnan province; China Chevrier's field mouse; Apodemus chevrieri Bubonic plague 632 Yersinia pestis Clinical Sample USA: Tuba City; AZ Homo sapiens Bubonic plague 187410 Yersinia pestis KIM10+ NA NA Homo sapiens Bubonic plague 377628 Yersinia pestis Nepal516 soil sample from Nepal Nepal Homo sapiens Bubonic plague 386656 Yersinia pestis Pestoides F NA NA Homo sapiens Bubonic plague 632 Yersinia pestis Shasta Human clinical USA: California Homo sapiens Bubonic plague 637386 Yersinia pestis Z176003 dead marmot Tibet Autonomous Region China Homo sapiens Bubonic plague 547048 Yersinia pestis biovar Medievalis str. Harbin 35 human isolate from China China Homo sapiens Bubonic plague; Pneumonic plague 229193 Yersinia pestis biovar Microtus str. 91001 NA NA Homo sapiens Bubonic plague 349747 Yersinia pseudotuberculosis IP 31758 the stools of a patient presenting with scarlet-like fever Primorski region of the former USSR Homo sapiens Enterocolitis; soft tissue infections; mesenteric lymphadenitis 273123 Yersinia pseudotuberculosis IP 32953 human patient NA Homo sapiens Enterocolitis; soft tissue infections; mesenteric lymphadenitis 502801 Yersinia pseudotuberculosis PB1/+ NA NA Homo sapiens Enterocolitis; soft tissue infections; mesenteric lymphadenitis 502800 Yersinia pseudotuberculosis YPIII NA NA Homo sapiens Enterocolitis; soft tissue infections; mesenteric lymphadenitis 748672 Yersinia pseudotuberculosis str. PA3606 Pa3606 NA Japan: Fukushima Homo sapiens Enterocolitis; soft tissue infections; mesenteric lymphadenitis 29485 Yersinia rohdei human and dog feces and surface water Homo sapiens; Canis familiaris Enterocolitis; soft tissue infections; mesenteric lymphadenitis 29486 Yersinia ruckeri liver USA: Oregon Onchorhynchus tshawytscha Enteric redmouth disease 367190 Yersinia similis strain 228 feces Germany Oryctolagus cuniculus Unknown 158877 yokenella regensburgei Homo sapiens Bacteraemia; wound infection 1313215 Aichi virus Homo sapiens gastroenteritis 172148 Alkhurma virus Homo sapiens Alkhurma Hemorrhagic Fever 11019 Alphavirus Homo sapiens various human diseases 337039 Alphapapillomavirus 2 Homo sapiens warts; papilloma; malignant tumours. Genital-type; high-risk of malignancy (cervical cancer): HPV-16; 18. Genital-type; low-risk of malignancy (genital warts): HPV-6; 11 337041 Alphapapillomavirus 9 Homo sapiens warts; papilloma; malignant tumours. Genital-type; high-risk of malignancy (cervical cancer): HPV-16; 18. Genital-type; low-risk of malignancy (genital warts): HPV-6; 12 337042 Alphapapillomavirus 7 Homo sapiens warts; papilloma; malignant tumours. Genital-type; high-risk of malignancy (cervical cancer): HPV-16; 18. Genital-type; low-risk of malignancy (genital warts): HPV-6; 13 337044 Alphapapillomavirus 5 Homo sapiens warts; papilloma; malignant tumours. Genital-type; high-risk of malignancy (cervical cancer): HPV-16; 18. Genital-type; low-risk of malignancy (genital warts): HPV-6; 14 337048 Alphapapillomavirus 1 Homo sapiens warts; papilloma; malignant tumours. Genital-type; high-risk of malignancy (cervical cancer): HPV-16; 18. Genital-type; low-risk of malignancy (genital warts): HPV-6; 15 337049 Alphapapillomavirus 11 Homo sapiens warts; papilloma; malignant tumours. Genital-type; high-risk of malignancy (cervical cancer): HPV-16; 18. Genital-type; low-risk of malignancy (genital warts): HPV-6; 16 337050 Alphapapillomavirus 6 Homo sapiens warts; papilloma; malignant tumours. Genital-type; high-risk of malignancy (cervical cancer): HPV-16; 18. Genital-type; low-risk of malignancy (genital warts): HPV-6; 17 333754 Alphapapillomavirus 10 Homo sapiens warts; papilloma; malignant tumours. Genital-type; high-risk of malignancy (cervical cancer): HPV-16; 18. Genital-type; low-risk of malignancy (genital warts): HPV-6; 18 333767 Alphapapillomavirus 3 Homo sapiens warts; papilloma; malignant tumours. Genital-type; high-risk of malignancy (cervical cancer): HPV-16; 18. Genital-type; low-risk of malignancy (genital warts): HPV-6; 19 333757 Alphapapillomavirus 8 Homo sapiens warts; papilloma; malignant tumours. Genital-type; high-risk of malignancy (cervical cancer): HPV-16; 18. Genital-type; low-risk of malignancy (genital warts): HPV-6; 20 46607 Andes virus human Argentina Homo sapiens severe pulmonary syndrome 64280 Apoi virus Homo sapiens infection 64303 Aroa virus Homo sapiens infection 90961 Australian bat lyssavirus Homo sapiens; Chiroptera (bats) Fatal encephalitis 120505 Baboon cytomegalovirus Homo sapiens; Baboon infection after organ transplantation 64290 Bagaza virus Homo sapiens; birds Avian meningoencephalomyelitis 77763 Banna virus Homo sapiens; cattle; pig; mosquitoes Encephalitis 38837 Banzi virus Homo sapiens infection 11020 Barmah forest virus Homo sapiens; marsupials; mosquitoes Fever; joint pain 37962 Bayou virus Homo sapiens; oryzomys palustris infection 59305 Bebaru virus Homo sapiens infection 694003 Betacoronavirus 1 bos taurus; bubalus bubalis; canis lupus; canis lupus familiaris; equus caballus; giraffa camelopardalis; hemitragus jemlahicus; Homo sapiens; kobus ellipsiprymnus; lama pacos; odocoileus virginianus; rusa unicolor; sus scrofa; tragelaphus angasii; tragelaphus spekii infection 337051 Betapapillomavirus 1 Homo sapiens infection 333924 Betapapillomavirus 2 Homo sapiens infection 334207 Betapapillomavirus 3 Homo sapiens infection 1213620 Bhanja virus Homo sapiens; rhipicephalus decoloratus infection 10629 BK virus Homo sapiens BK virus infection 10629 BK polyomavirus Homo sapiens BK virus infection 39719 Black creek canal virus Homo sapiens infection 1507401 Bocaparvovirus Homo sapiens gastrointestinal and respiratory infection 1507401 Bocavirus Homo sapiens gastrointestinal and respiratory infection 12455 Borna disease virus amazona aestiva; anas platyrhynchos; anodorhynchus hyacinthinus; ara ararauna; ara chloropterus; ara severa; aratinga erythrogenys; aratinga solstitialis; bos taurus; cacatua alba; cacatua ducorpsii; cacatua moluccensis; cacatua sulphurea; canis lupus; canis lupus familiaris; corvus monedula; crocidura leucodon; deroptyus accipitrinus; eclectus roratus; eolophus roseicapillus; equus asinus; equus caballus; felis catus; Homo sapiens; lama pacos; oryctolagus cuniculus; ovis aries; pionus fuscus; pionus maximiliani; probosciger aterrimus; procyon lotor; psittacus erithacus; serinus canaria; vulpes vulpes infection 11303 Bovine ephemeral fever virus Homo sapiens infection 129727 Bovine papular stomatitis virus bos taurus; Homo sapiens infection 32605 Buffalopox virus bos taurus; bubalus bubalis; Homo sapiens infection 35304 Bunyamwera virus anopheles barbirostris; anopheles gambiae; anopheles maculipennis; anopheles quadrimaculatus; anopheles subpictus; bos taurus; culex gelidus; culex pseudovishnui; culex tritaeniorhynchus; culiseta inornata; equus caballus; Homo sapiens; mansonia uniformis; ochlerotatus taeniorhynchus; sus scrofa Encephalitis 11572 Bunyavirus Homo sapiens Hemorrhagic fever with renal syndrome (HFRS) 11577 Bunyavirus La Crosse Homo sapiens; deer; mosquitoes; tamias Encephalitis 11580 Bunyavirus snowshoe hare Homo sapiens; rodents; mosquitoes Encephalitis 64304 Bussuquara virus Homo sapiens infection 35310 Bwamba virus aedes circumluteolus; Homo sapiens infection 11974 Caliciviridae Homo sapiens infection 35305 California encephalitis virus aedes albopictus; aedes cinereus; aedes vexans; anopheles maculipennis; bos taurus; culex modestus; culiseta inornata; equus caballus; Homo sapiens; lepus americanus; ochlerotatus abserratus; ochlerotatus canadensis; ochlerotatus cantans; ochlerotatus caspius; ochlerotatus cataphylla; ochlerotatus communis; ochlerotatus dorsalis; ochlerotatus excrucians; ochlerotatus squamiger; ochlerotatus taeniorhynchus; ochlerotatus triseriatus Encephalitis 28873 Camelpox virus camelus bactrianus; camelus dromedarius; Homo sapiens infection 629725 Candiru virus Homo sapiens infection 192196 Caraparu virus cebus apella; culex portesi; Homo sapiens infection 1678225 Catu virus Homo sapiens infection 10325 Cercopithecine herpesvirus 1 chlorocebus aethiops; Homo sapiens infection 629727 Chagres virus Homo sapiens infection 11272 Chandipura virus Homo sapiens; sandflies Encephalitis 40052 Changuinola virus Homo sapiens infection 499556 Chapare virus Homo sapiens Hemorrhagic fever 37124 Chikungunya virus aedes aegypti; aedes africanus; aedes albopictus; aedes furcifer; aedes luteocephalus; Homo sapiens; macaca fascicularis Fever; joint pain 693995 Coronavirus Homo sapiens Common cold (Acute viral rhinopharyngitis; Acute coryza) 586419 Cosavirus A Homo sapiens gastroenteritis 10243 Cowpox virus acinonyx jubatus; ailurus fulgens; apodemus agrarius; apodemus flavicollis; apodemus sylvaticus; bos taurus; callithrix jacchus; canis lupus; canis lupus familiaris; equus caballus; felis catus; Homo sapiens; lama glama; loxodonta africana; lynx lynx; microtus agrestis; microtus arvalis; microtus socialis; mus musculus; myodes glareolus; rattus norvegicus infection 138948 Coxsackie virus Homo sapiens Meningitis; myocarditi;; paralysis; Hand; foot and mouth disease (HFMD) 1453406 Chim virus Homo sapiens infection 46839 Colorado tick fever virus Homo sapiens Colorado tick fever (CTF) 186541 Cote d'Ivoire ebolavirus Homo sapiens Ebola hemorrhagic fever 11593 Crimean-Congo hemorrhagic fever virus argas reflexus; bos taurus; capra hircus; Homo sapiens; hyalomma anatolicum; hyalomma asiaticum; hyalomma detritum; hyalomma excavatum; hyalomma impeltatum; hyalomma truncatum; ovis aries; rattus norvegicus; rhipicephalus annulatus; rhipicephalus bursa; rhipicephalus sanguineus Crimean-Congo hemorrhagic fever (CCHF) 64282 Dakar bat virus Homo sapiens infection 12637 Dengue virus aedes aegypti; aedes albopictus; carollia perspicillata; didelphis marsupialis; Homo sapiens; marmosa murina; mus musculus; proechimys cuvieri Dengue fever 11318 Dhori virus Homo sapiens; ticks Fever; encephalitis 12506 Dobrava-Belgrade virus apodemus agrarius; apodemus flavicollis; apodemus ponticus; apodemus sylvaticus; Homo sapiens; meriones tamariscinus; microtus arvalis; mus musculus; myodes glareolus; sorex araneus pulmonary syndrome; hemorrrhagic fever with renal syndrome 11595 Dugbe virus amblyomma gemma; amblyomma lepidum; amblyomma variegatum; bos taurus; Homo sapiens; ovis aries; rhipicephalus pulchellus Thrombocytopaenia 38767 Duvenhage virus Homo sapiens; mammals Fatal encephalitis 11021 Eastern equine encephalitis virus bos taurus; coquillettidia perturbans; corvus brachyrhynchos; culex erraticus; culex nigripalpus; culex restuans; culex salinarius; culiseta melanura; culiseta morsitans; cyanocitta cristata; equus caballus; haliaeetus leucocephalus; Homo sapiens; melospiza melodia; ochlerotatus canadensis; passerina cyanea; phoca vitulina; quiscalus quiscula; sus scrofa; thryothorus ludovicianus; vireo griseus; vireo olivaceus; zenaida macroura Encephalitis 64296 Edge Hill virus Homo sapiens infection 12104 Encephalomyocarditis virus glis glis; Homo sapiens; mus musculus; pan paniscus; pan troglodytes; rattus norvegicus; sus scrofa; sus scrofa domesticus; tamiasciurus hudsonicus Encephalitis 138950 Enterovirus c gorilla gorilla; Homo sapiens; mandrillus sphinx; pan troglodytes infection 186536 Ebolavirus (EBOV) Homo sapiens Ebola hemorrhagic fever 33758 Echovirus Homo sapiens Common cold 12059 Enterovirus Homo sapiens Enterovirus infection 39054 Enterovirus 71 Homo sapiens Hand; foot and mouth disease (HFMD) 39054 Enterovirus A71 Homo sapiens Hand; foot and mouth disease (HFMD) 106966 Enterovirus G Homo sapiens infection 10376 Epstein-Barr Virus (EBV) Homo sapiens Mononucleosis 47000 Equine rhinitis A virus Homo sapiens; horses infection 57482 European bat lyssavirus 1 eptesicus serotinus; felis catus; Homo sapiens Fatal encephalitis 57483 European bat lyssavirus 2 Homo sapiens; myotis dasycneme; myotis daubentonii Fatal encephalitis 36383 Everglades virus Homo sapiens infection 62352 Eyach virus Homo sapiens infection 12110 Foot and mouth disease virus aepyceros melampus; bos grunniens; bos indicus; bos taurus; bubalus bubalis; capra hircus; Homo sapiens; ovis aries; phacochoerus aethiopicus; potamochoerus porcus; sus scrofa; sus scrofa domesticus; syncerus caffer infection 333926 Gammapapillomavirus 1 Homo sapiens warts; papilloma 1764076 Gan gan virus Homo sapiens infection 54290 GB virus C Homo sapiens; pan troglodytes infection 59300 Getah virus Homo sapiens; horse; bats infection; fever 11840 Gibbon ape leukemia virus Homo sapiens; lagothrix lagotricha infection 204269 Great Island virus Homo sapiens infection 1678234 Guama virus Central and South America Homo sapiens infection 45219 Guanarito virus Homo sapiens; zygodontomys brevicauda Venezuelan hemorrhagic fever 80941 Guaroa virus Homo sapiens infection 11598 Hantavirus Homo sapiens; rodents Hantavirus Pulmonary Syndrome (HPS); hemorrrhagic fever with renal syndrome 11599 Hantaan virus Homo sapiens; rodents Renal or respiratory syndrome 1216928 Heartland virus Homo sapiens Heartland virus disease 63330 Hendra virus Homo sapiens; horse; bats Encephalitis 12092 Hepatitis A virus Homo sapiens Hepatitis 10407 Hepatitis B virus Homo sapiens Hepatitis 11103 Hepatitis C virus Homo sapiens Hepatitis 12475 Hepatitis delta virus Homo sapiens Hepatitis 12461 Hepatitis E virus Homo sapiens Hepatitis E 54290 Hepatitis G virus Homo sapiens infection but no disease 10298 Herpes simplex virus 1 (HSV-1) Homo sapiens Skin lesions 10310 Herpes simplex virus 2( HSV-2) Homo sapiens Skin lesions 397342 Horsepox virus Homo sapiens; horses infection 69244 HU39694 virus Homo sapiens; rodents Hantavirus Pulmonary Syndrome (HPS); hemorrrhagic fever with renal syndrome 248052 Hughes virus Homo sapiens infection 129875 Human adenovirus A Homo sapiens Respiratory 108098 Human adenovirus B gorilla gorilla; Homo sapiens Respiratory 129951 Human adenovirus C cichorium intybus; felis catus; Homo sapiens; lactuca sativa; pan troglodytes; spinacia oleracea Respiratory 130310 Human adenovirus D Homo sapiens Respiratory 130308 Human adenovirus E Homo sapiens Respiratory 130309 Human adenovirus F Homo sapiens; spinacia oleracea Respiratory 1239565 Human astrovirus Homo sapiens Gastroenteritis 329641 Human bocavirus Homo sapiens Respiratory 11137 Human coronavirus 229E Homo sapiens Respiratory 290028 Human coronavirus HKU1 Homo sapiens Respiratory 277944 Human coronavirus NL63 Homo sapiens Respiratory 31631 Human coronavirus OC43 Homo sapiens Respiratory 42789 Human enterovirus 68 Homo sapiens respiratory illness (common cold); hand; foot and mouth disease; acute hemorrhagic conjunctivitis; aseptic meningitis; myocarditis; severe neonatal sepsis-like disease; acute flaccid paralysis 12090 Human enterovirus 70 Homo sapiens respiratory illness (common cold); hand; foot and mouth disease; acute hemorrhagic conjunctivitis; aseptic meningitis; myocarditis; severe neonatal sepsis-like disease; acute flaccid paralysis 39054 Human enterovirus 71 Homo sapiens respiratory illness (common cold); hand; foot and mouth disease; acute hemorrhagic conjunctivitis; aseptic meningitis; myocarditis; severe neonatal sepsis-like disease; acute flaccid paralysis 138948 Human enterovirus A Homo sapiens respiratory illness (common cold); hand; foot and mouth disease; acute hemorrhagic conjunctivitis; aseptic meningitis; myocarditis; severe neonatal sepsis-like disease; acute flaccid paralysis 138949 Human enterovirus B Homo sapiens; sus scrofa respiratory illness (common cold); hand; foot and mouth disease; acute hemorrhagic conjunctivitis; aseptic meningitis; myocarditis; severe neonatal sepsis-like disease; acute flaccid paralysis 138950 Human enterovirus C gorilla gorilla; Homo sapiens; mandrillus sphinx; pan troglodytes respiratory illness (common cold); hand; foot and mouth disease; acute hemorrhagic conjunctivitis; aseptic meningitis; myocarditis; severe neonatal sepsis-like disease; acute flaccid paralysis 138951 Human enterovirus D Homo sapiens respiratory illness (common cold); hand; foot and mouth disease; acute hemorrhagic conjunctivitis; aseptic meningitis; myocarditis; severe neonatal sepsis-like disease; acute flaccid paralysis 10298 Human Herpesvirus 1 callithrix penicillata; Homo sapiens; pithecia pithecia; tursiops truncatus Skin lesions 10310 Human Herpesvirus 2 Homo sapiens Skin lesions 10335 Human Herpesvirus 3 Homo sapiens Chickenpox; shingles (Herpes zoster) 10376 Human Herpesvirus 4 canis lupus; canis lupus familiaris; Homo sapiens; macaca fascicularis Mononucleosis 10359 Human Herpesvirus 5 Homo sapiens infection 10368 Human Herpesvirus 6 Homo sapiens; pan troglodytes Skin lesions; Exanthem subitum (Sixth disease) 10372 Human Herpesvirus 7 Homo sapiens Skin lesions; Exanthem subitum (Sixth disease) 37296 Human Herpesvirus 8 chlorocebus aethiops; gorilla gorilla; Homo sapiens; macaca mulatta; macaca nemestrina; mandrillus sphinx; pan troglodytes Skin lymphoma 11676 Human Immunodeficiency Virus 1 Homo sapiens; macaca mulatta; pan troglodytes; semnopithecus entellus AIDS (Acquired immunodeficiency syndrome) 11709 Human Immunodeficiency Virus 2 Homo sapiens AIDS (Acquired immunodeficiency syndrome) 162145 Human metapneumovirus Homo sapiens; pan troglodytes Human metapneumovirus infection 10566 Human papillomavirus Homo sapiens Human papillomavirus (HPV) infection 334203 Human papillomavirus 1 Homo sapiens Skin warts 333751 Human papillomavirus 2 Homo sapiens Skin warts 333759 Human papillomavirus 10 Homo sapiens Human papillomavirus (HPV) infection 337041 Human papillomavirus 16 Homo sapiens Genital warts; cervical cancer 337042 Human papillomavirus 18 Homo sapiens Genital warts; cervical cancer 337044 Human papillomavirus 26 Homo sapiens Human papillomavirus (HPV) infection 337048 Human papillomavirus 32 Homo sapiens Human papillomavirus (HPV) infection 337049 Human papillomavirus 34 Homo sapiens Human papillomavirus (HPV) infection 333926 Human papillomavirus 4 Homo sapiens Human papillomavirus (HPV) infection 334207 Human papillomavirus 49 Homo sapiens Human papillomavirus (HPV) infection 337051 Human papillomavirus 5 Homo sapiens; macaca fascicularis Human papillomavirus (HPV) infection 333765 Human papillomavirus 53 Homo sapiens Human papillomavirus (HPV) infection 1671798 Human papillomavirus 54 Homo sapiens Human papillomavirus (HPV) infection 333754 Human papillomavirus 6 Homo sapiens Human papillomavirus (HPV) infection 333767 Human papillomavirus 61 Homo sapiens Human papillomavirus (HPV) infection 333757 Human papillomavirus 7 Homo sapiens Human papillomavirus (HPV) infection 333924 Human papillomavirus 9 felis catus; Homo sapiens Human papillomavirus (HPV) infection 12730 Human parainfluenza virus 1 Homo sapiens; mus musculus Respiratory 11212 Human parainfluenza virus 2 Homo sapiens Respiratory 11216 Human parainfluenza virus 3 cavia porcellus; Homo sapiens Respiratory 11203 Human parainfluenza virus 4 Homo sapiens Respiratory 12063 Human parechovirus type 1 Homo sapiens gastrointestinal and respiratory diseases 195054 Human parechovirus type 2 Homo sapiens gastrointestinal and respiratory diseases 10798 Human parvovirus B19 Homo sapiens Fifth disease 145856 Human picobirnavirus Homo sapiens Gastroenteritis 11250 Human respiratory syncytial virus Homo sapiens Respiratory 147711 Human rhinovirus A Homo sapiens Respiratory 147712 Human rhinovirus B Homo sapiens Respiratory 463676 Human rhinovirus c Homo sapiens Respiratory 11908 Human T-lymphotropic virus 1 Homo sapiens Leukemia 11909 Human T-lymphotropic Virus 2 Homo sapiens Leukemia 28332 Human T-lymphotropic virus 3 Homo sapiens Leukemia 318279 Human T-lymphotropic virus 4 Homo sapiens Leukemia 67605 Human torovirus Homo sapiens Gastroenteritis 79899 Igbo Ora virus Homo sapiens infection 59563 Ilheus virus Homo sapiens infection 180170 infectious spleen and kidney necrosis virus acanthopagrus latus; colisa lalia; epinephelus coioides; epinephelus fuscoguttatus; epinephelus lanceolatus; epinephelus malabaricus; Homo sapiens; larimichthys crocea; lateolabrax japonicus; lates calcarifer; macropodus opercularis; micropterus salmoides; mugil cephalus; oplegnathus fasciatus; oplegnathus punctatus; pagrus major; paralichthys olivaceus; pseudocaranx dentex; pterapogon kauderni; scophthalmus maximus; seriola dumerili; seriola quinqueradiata; siniperca chuatsi; thunnus orientalis; trichogaster leerii infection 11320 Influenza A virus accipiter trivirgatus; acinonyx jubatus; aechmophorus occidentalis; aix galericulata; aix sponsa; alectoris chukar; alopochen aegyptiacus; anas acuta; anas americana; anas capensis; anas carolinensis; anas castanea; anas clypeata; anas crecca; anas cyanoptera; anas discors; anas formosa; anas penelope; anas platyrhynchos; anas poecilorhyncha; anas querquedula; anas rubripes; anas strepera; anas superciliosa; anser albifrons; anser anser; anser brachyrhynchus; anser caerulescens; anser fabalis; anser indicus; ardea alba; ardea cinerea; arenaria interpres; arenaria melanocephala; aythya americana; aythya collaris; aythya ferina; aythya fuligula; bombycilla cedrorum; branta canadensis; branta leucopsis; bucephala albeola; bucephala clangula; buteo buteo; butorides virescens; cairina moschata; calidris acuminata; calidris alba; calidris alpina; calidris canutus; calidris minutilla; calidris pusilla; calidris ruficollis; canis lupus; canis lupus familiaris; catharus fuscescens; catharus guttatus; catharus ustulatus; cepora nerissa; chlidonias hybridus; chrysolophus pictus; ciconia ciconia; columba livia; contopus sordidulus; corvus frugilegus; corvus monedula; corvus splendens; coturnix japonica; cygnus columbianus; cygnus cygnus; cygnus olor; dendrocygna viduata; dromaius novaehollandiae; empidonax alnorum; empidonax difficilis; equus asinus; equus caballus; equus przewalskii; falco cherrug; falco naumanni; falco peregrinus; falco tinnunculus; felis catus; fulica americana; fulica atra; gallicrex cinerea; gallus gallus; haliaeetus leucocephalus; Homo sapiens; icteria virens; inachis io; lanius schach; larus argentatus; larus atricilla; larus brunnicephalus; larus californicus; larus canus; larus delawarensis; larus dominicanus; larus glaucescens; larus hyperboreus; larus ichthyaetus; larus marinus; larus melanocephalus; larus michahellis; larus mongolicus; larus novaehollandiae; larus ridibundus; larus schistisagus; leiothrix argentauris; leiothrix lutea; lonchura striata; lophura leucomelanos; melanitta fusca; meleagris gallopavo; melospiza melodia; mergellus albellus; milvus migrans; mus musculus; mustela lutreola; mustela putorius; mustela putorius furo; myrmecophaga tridactyla; necrosyrtes monachus; neofelis nebulosa; neovison vison; netta peposaca; nisaetus nipalensis; numida meleagris; ondatra zibethicus; onychoprion fuscatus; oporornis tolmiei; panthera tigris; passer domesticus; passer montanus; passerella iliaca; pelecanus erythrorhynchos; phalacrocorax auritus; phalacrocorax carbo; phoca vitulina; piaya minuta; pica pica; pionus menstruus; piranga ludoviciana; pluvialis fulva; podiceps cristatus; puffinus pacificus; regulus satrapa; rissa tridactyla; seiurus noveboracensis; somateria mollissima; sterna hirundo; struthio camelus; sturnus sericeus; sturnus vulgaris; sus scrofa; sus scrofa domesticus; tachybaptus ruficollis; tadorna ferruginea; tadorna tadornoides; thryomanes bewickii; turdus migratorius; uria aalge; uria lomvia; zosterops japonicus influenza 11520 Influenza B virus canis lupus familiaris; felis catus; Homo sapiens influenza 11552 Influenza c virus canis lupus; canis lupus familiaris; Homo sapiens influenza 1453408 Issyk-Kul virus Homo sapiens infection 35511 Jamestown Canyon virus Homo sapiens infection 11072 Japanese encephalitis virus Homo sapiens; horses; birds; mosquitoes Encephalitis 10632 JC virus Homo sapiens Encephalitis; Progressive multifocal leukoencephalopathy 10632 JC polyomavirus Homo sapiens Encephalitis; Progressive multifocal leukoencephalopathy 11619 Junin arenavirus calomys laucha; calomys musculinus; Homo sapiens; oligoryzomys flavescens Argentine hemorrhagic fever 430511 Juquitiba virus Homo sapiens; oligoryzomys fornesi; oligoryzomys nigripes pulmonary syndrome; hemorrrhagic fever with renal syndrome 80939 Kairi virus Homo sapiens; rodents infection 1712570 Kasokero virus Homo sapiens; bats infection 64311 Kedougou virus Homo sapiens infection 40064 Kemerovo virus Homo sapiens; ixodes pavlovskyi; ixodes persulcatus; ixodes ricinus febrile illness; meningioencephalitis 423445 KI Polyomavirus Homo sapiens Encephalitis 44024 Kokobera virus Homo sapiens infection 11599 Korean hemorrhagic fever virus Homo sapiens Hemorrhagic fever 318836 Kotonkan virus Homo sapiens; sheep horses; birds infection 44025 Koutango virus Homo sapiens infection 11092 Kumlinge virus Homo sapiens Encephalitis 11077 Kunjin virus Homo sapiens; horses; birds; mosquitoes Encephalitis 33743 Kyasanur forest disease virus Homo sapiens; hyalomma dromedarii; ornithodoros savignyi Hemorrhagic fever 11577 La Crosse virus Homo sapiens; deer; mosquitoes; tamias Encephalitis 38766 Lagos bat virus Homo sapiens; mammals Fatal encephalitis 61172 Laguna Negra virus akodon simulator; calomys laucha; Homo sapiens Hantavirus Pulmonary Syndrome (HPS) 11269 Lake Victoria marburgvirus hipposideros caffer; Homo sapiens; mus musculus; rousettus aegyptiacus Hemorrhagic fever 1564119 Lanjan virus Homo sapiens infection 11620 Lassa virus Homo sapiens; mastomys natalensis Hemorrhagic fever; Lassa fever 40057 Lebombo virus Homo sapiens infection 69245 Lechiguanas virus Homo sapiens; oligoryzomys flavescens Hantavirus Pulmonary Syndrome (HPS) 82658 Lordsdale virus Homo sapiens Gastroenteritis 11086 Louping ill virus capra hircus; Homo sapiens; ixodes persulcatus; ovis aries Encephalitis 649188 Lujo virus Homo sapiens; rodents Hemorrhagic fever 11623 Lymphocytic choriomeningitis virus apodemus sylvaticus; callimico goeldii; callithrix pygmaea; cavia porcellus; Homo sapiens; mesocricetus auratus; mus musculus Lymphocytic choriomeningitis; encephalitis 10325 Macacine herpesvirus 1 Homo sapiens; macaca fascicularis; macaca fuscata; macaca mulatta; pan troglodytes Bolivian hemorrhagic fever 11628 Machupo virus apodemus agrarius; calomys callosus; Homo sapiens Encephalitis 348013 Madrid virus Homo sapiens; mosquitoes infection 351073 Mammalian orthoreovirus bos taurus; canis lupus; canis lupus familiaris; Homo sapiens; mus musculoides; paguma larvata; pipistrellus kuhlii; rhinolophus hipposideros; sus scrofa; tadarida teniotis; vespertilio murinus mild upper respiratory tract disease; gastroenteritis; biliary atresia 186537 Marburgvirus Homo sapiens Marburg hemorrhagic fever (MHF) 292278 Marituba virus cebus apella; Homo sapiens; nectomys squamipes febrile illness 59301 Mayaro virus Homo sapiens; mosquitoes Fever; joint pain 11234 Measles virus Homo sapiens; macaca mulatta Measles; fever; rash 152219 Menangle virus Homo sapiens; sus scrofa; sus scrofa domesticus fever; chills; rigors; drenching sweats; malaise; headache; red spotty rash 31702 Mengo encephalomyocarditis virus Homo sapiens mouse; rabbit Encephalitis 493803 Merkel cell polyomavirus Homo sapiens Merkel cell carcinoma 1335626 MERS coronavirus Homo sapiens; Tomb bat Respiratory 12538 Mokola virus canis lupus familiaris; felis catus; Homo sapiens Encephalitis 10278 Molluscipoxvirus Homo sapiens infection 10279 Molluscum contagiosum virus equus asinus; Homo sapiens Skin lesions 10244 Monkeypox virus callithrix jacchus; Homo sapiens; pan troglodytes Skin lesions 11598 Monongahela virus USA: West Virginia Homo sapiens; rodents pulmonary syndrome; hemorrrhagic fever with renal syndrome 11757 Mouse mammary tumor virus Homo sapiens; mus musculus infection 60875 Mucambo virus Homo sapiens infection 11161 Mumps virus Homo sapiens; papio anubis; papio cynocephalus; papio hamadryas; papio papio; papio ursinus Mumps 11786 Murine leukemia virus bos taurus; halichoerus grypus; Homo sapiens; meles meles; mus musculus; mus spretus; neovison vison; oryctolagus cuniculus; ovis aries; rattus norvegicus; sus scrofa; tadarida brasiliensis; vulpes vulpes infection 11079 Murray Valley encephalitis virus culex annulirostris; equus caballus; Homo sapiens Encephalitis 11176 Newcastle disease virus accipiter gularis; aix galericulata; aix sponsa; anas acuta; anas carolinensis; anas clypeata; anas crecca; anas discors; anas formosa; anas fulvigula; anas penelope; anas platyrhynchos; anas rubripes; anser albifrons; anser fabalis; arenaria interpres; asio otus; aythya ferina; bonasa bonasia; branta canadensis; bubo virginianus; buteo lagopus; cairina moschata; calidris alba; calidris alpina; calidris canutus; calidris minutilla; columba livia; coturnix japonica; dendrocopos major; dromaius novaehollandiae; gallus gallus; haliaeetus leucocephalus; Homo sapiens; inachis io; larus ridibundus; meleagris gallopavo; melopsittacus undulatus; pavo cristatus; phasianus colchicus; phoenicopterus ruber; rallus aquaticus; sternula albifrons; struthio camelus; sus scrofa; threskiornis aethiopicus; turdus merula; zenaida macroura infection 44755 New York virus Homo sapiens; peromyscus leucopus; Mus musculus Hemorrhagic fever 121791 Nipah virus canis lupus familiaris; Homo sapiens; pteropus giganteus; pteropus lylei; pteropus vampyrus; sus scrofa; sus scrofa domesticus Encephalitis; respiratory 142786 Norovirus Homo sapiens; bats Encephalitis 11983 Norwalk virus Homo sapiens Gastroenteritis 64292 Ntaya virus Homo sapiens infection 35316 Nyando virus Homo sapiens febrile illness 31699 Ockelbo virus (subtype of Sindbis) Homo sapiens arthritis; rash; fever 12542 Omsk haemorrhagic fever virus androlaelaps casalis; dermacentor reticulatus; Homo sapiens; ondatra zibethicus Hemorrhagic fever 11027 O'nyong-nyong virus Homo sapiens; mosquitoes Fever; joint pain 69247 Oran virus Homo sapiens; oligoryzomys longicaudatus pulmonary syndrome 10258 Orf virus budorcas taxicolor; camelus dromedarius; capra hircus; capricornis crispus; Homo sapiens; ovibos moschatus; ovis aries; rangifer tarandus Skin lesions 192199 Oriboca virus cebus apella; culex taeniopus; Homo sapiens infection 118655 Oropouche virus bradypus tridactylus; culex quinquefasciatus; Homo sapiens Fever; joint pain 11572 Orthobunyavirus Homo sapiens Hemorrhagic fever with renal syndrome (HFRS) 11308 Orthomyxoviridae Homo sapiens Influenza (flu) 10242 Orthopoxvirus Homo sapiens smallpox; cowpox; horsepox; monkeypox. 40058 Orungo virus Homo sapiens infection 11207 Parainfluenza virus 5 canis lupus; canis lupus familiaris; Homo sapiens respiratory illness 10257 Parapoxvirus Homo sapiens infection 10798 Parvovirus B19 Homo sapiens Skin lesion 64894 Phnom-Penh bat virus Homo sapiens infection 11630 Pichinde mammarenavirus Homo sapiens; rat; guinea pig Hemorrhagic fever 104394 Picobirnavirus Homo sapiens Gastroenteritis 11274 Piry virus Homo sapiens Piry fever 138950 Poliovirus Homo sapiens; mammals Poliomyelitis 106966 Porcine enterovirus B Homo sapiens; sus scrofa; sus scrofa domesticus Hand; Foot and Mouth Disease 369960 Porcine type-C oncovirus Homo sapiens; phacochoerus africanus; sus barbatus; sus celebensis; sus scrofa; sus verrucosus Encephalitis 11083 Powassan virus dermacentor silvarum; haemaphysalis longicornis; Homo sapiens; ixodes cookei; ixodes scapularis infection 194440 Primate T-lymphotropic virus 1 cercocebus agilis; cercocebus torquatus; cercopithecus ascanius; cercopithecus cephus; cercopithecus mitis; cercopithecus nictitans; cercopithecus pogonias; chlorocebus aethiops; Homo sapiens; lophocebus albigena; macaca arctoides; macaca fascicularis; macaca maura; macaca mulatta; macaca nemestrina; mandrillus sphinx; pan troglodytes; papio anubis; papio cynocephalus; papio hamadryas; papio papio; piliocolobus badius; piliocolobus tephrosceles; symphalangus syndactylus; theropithecus gelada infection 194441 Primate T-lymphotropic virus 2 Homo sapiens; pan paniscus; papio hamadryas infection 194443 Primate T-lymphotropic virus 3 cercocebus agilis; cercopithecus aethiops; cercopithecus cephus; cercopithecus mona; cercopithecus nictitans; Homo sapiens; lophocebus albigena; mandrillus sphinx; pan troglodytes; papio anubis; papio cynocephalus; papio hamadryas; papio papio; papio ursinus; theropithecus gelada infection 129726 Pseudocowpox virus bos taurus; camelus dromedarius; Homo sapiens; rangifer tarandus skin lesions 11587 Punta Toro virus Homo sapiens; sandflies Hemorrhagic fever 11604 Puumala virus apodemus agrarius; eothenomys regulus; Homo sapiens; meriones tamariscinus; myodes glareolus; myodes regulus; myodes rufocanus Hemorrhagic fever 688436 Quaranfil Virus Homo sapiens infection 11292 Rabies virus antrozous pallidus; artibeus fimbriatus; artibeus jamaicensis; artibeus lituratus; artibeus planirostris; atilax paludinosus; bassariscus astutus; bos primigenius; bos taurus; bubalus bubalis; callithrix jacchus; camelus bactrianus; camelus dromedarius; canis latrans; canis lupus; canis lupus familiaris; canis mesomelas; canis simensis; capra hircus; cebus apella; cervus nippon; chrysocyon brachyurus; civettictis civetta; connochaetes taurinus; corynorhinus townsendii; crocuta crocuta; cynictis penicillata; cynomops abrasus; desmodus rotundus; diphylla ecaudata; dusicyon thous; eptesicus brasiliensis; eptesicus diminutus; eptesicus furinalis; eptesicus fuscus; eptesicus serotinus; equus asinus; equus caballus; euderma maculatum; eumops auripendulus; eumops bonariensis; eumops glaucinus; eumops perotis; felis catus; felis nigripes; felis silvestris; galerella pulverulenta; galerella sanguinea; genetta genetta; glossophaga soricina; histiotus macrotus; Homo sapiens; ichneumia albicauda; lama glama; lasionycteris noctivagans; lasiurus blossevillii; lasiurus borealis; lasiurus cinereus; lasiurus ega; lasiurus intermedius; lasiurus seminolus; lasiurus xanthinus; lycalopex vetulus; lynx lynx; lynx rufus; marmota monax; meles meles; melogale moschata; mephitis macroura; mephitis mephitis; molossops neglectus; molossus molossus; molossus rufus; mus musculus; mustela putorius; mustela putorius furo; myotis albescens; myotis austroriparius; myotis californicus; myotis chiloensis; myotis daubentonii; myotis evotis; myotis keenii; myotis levis; myotis lucifugus; myotis nigricans; myotis riparius; myotis thysanodes; myotis velifer; myotis yumanensis; nyctereutes procyonoides; nycticeius humeralis; nyctinomops laticaudatus; nyctinomops macrotis; otocolobus manul; otocyon megalotis; ovis aries; panthera pardus; paradoxurus zeylonensis; parastrellus hesperus; pecari tajacu; pipistrellus subflavus; plecotus auritus; potos flavus; procyon lotor; proteles cristatus; rangifer tarandus; spermophilus undulatus; suricata suricatta; sus scrofa; sus scrofa domesticus; tadarida brasiliensis; tragelaphus oryx; urocyon cinereoargenteus; ursus maritimus; vulpes chama; vulpes corsac; vulpes lagopus; vulpes vulpes Rabies 12814 Respiratory syncytial virus (RSV) Homo sapiens Respiratory syncytial virus infection 186539 Reston ebolavirus Homo sapiens Hemorrhagic fever 12059 Rhinovirus Homo sapiens Rhinovirus infection; Common cold (Acute viral rhinopharyngitis; Acute coryza) 11588 Rift Valley fever virus aedes circumluteolus; aedes cumminsii; aedes mcintoshi; aedes ochraceus; aedes vexans; anopheles coustani; anopheles squamosus; bos taurus; capra hircus; culex antennatus; culex pipiens; culex poicilipes; culex zombaensis; eretmapodites quinquevittatus; hipposideros caffer; Homo sapiens; mansonia africana; mansonia uniformis; micropteropus pusillus; ochlerotatus taeniorhynchus; ovis aries; rattus rattus; syncerus caffer Hemorrhagic fever; Rift Valley fever (RVF) 64285 Rio Bravo virus Homo sapiens infection 46920 Rio Mamore virus holochilus sciureus; Homo sapiens; oligoryzomys fornesi; oligoryzomys microtis Hantavirus Pulmonary Syndrome (HPS) 64315 Rocio virus Homo sapiens; mosquitoes infection 1511805 Rosavirus A Homo sapiens infection 11029 Ross River virus equus caballus; grallina cyanoleuca; Homo sapiens; macropus agilis; microeca fascinans; poephila personata; mosquitoes Fever; joint pain 28875 Rotavirus A ailuropoda melanoleuca; bos taurus; bubalus bubalis; camelus bactrianus; camelus dromedarius; canis lupus; canis lupus familiaris; capra hircus; chlorocebus aethiops; equus caballus; felis catus; gallus gallus; giraffa camelopardalis; hippotragus niger; Homo sapiens; lama guanicoe; macaca mulatta; macaca nemestrina; meleagris gallopavo; mus musculus; oryctolagus cuniculus; ovis aries; petaurus breviceps; sciurus vulgaris; sus scrofa; sus scrofa domesticus; tamiasciurus hudsonicus; vicugna vicugna Gastroenteritis 28876 Rotavirus B bos taurus; Homo sapiens; ovis aries; rattus rattus; sus scrofa Gastroenteritis 36427 Rotavirus C bos taurus; Homo sapiens; mustela putorius furo; sus scrofa; sus scrofa domesticus Gastroenteritis 335100 Rotavirus D Homo sapiens Gastroenteritis 183405 Rotavirus F Homo sapiens Gastroenteritis 64288 Royal Farm virus Homo sapiens infection 11041 Rubella virus Homo sapiens Rubella 64316 Russian Spring-Summer encephalitis virus Homo sapiens Encephalitis 45709 Sabia virus Brazil Homo sapiens Brazilian Hemorrhagic Fever 59303 Sagiyama virus Homo sapiens; horse; pig; mosquitoes Fever; joint pain 10353 Saimiriine herpesvirus 1 Homo sapiens infection 904699 Salehabad virus Homo sapiens infection 1330524 Salivirus A Homo sapiens Gastroenteritis 206160 Sandfly fever Naples virus Homo sapiens; lemniscomys striatus; phlebotomus longicuspis; phlebotomus papatasi; phlebotomus perfiliewi; phlebotomus perniciosus; sergentomyia minuta Hemorrhagic fever 28292 Sandfly fever sicilian virus Homo sapiens; phlebotomus ariasi; phlebotomus longicuspis; phlebotomus papatasi; phlebotomus perniciosus; sergentomyia minuta Hemorrhagic fever 95342 Sapporo virus Homo sapiens; sus scrofa; sus scrofa domesticus Gastroenteritis 227859 SARS Coronavirus Homo sapiens SARS (Severe Acute Respiratory Syndrome) 40012 Saumarez Reef virus Homo sapiens infection 187984 Sealpox virus Homo sapiens infection 11033 Semliki Forest virus aedes ochraceus; Homo sapiens; birds; hedgehog; mosquitoes Fever; joint pain 11608 Seoul virus cricetulus barabensis; felis catus; Homo sapiens; microtus fortis; mus musculus; rattus flavipectus; rattus norvegicus; rattus rattus; rattus tanezumi; tscherskia triton Hemorrhagic fever 1003835 Severe fever with thrombocytopenia syndrome virus Homo sapiens febrile illness 44026 Sepik virus Homo sapiens infection 1003835 SFTS virus Homo sapiens infection 159148 Shuni virus Homo sapiens; horse nervous system disease 11642 Simian foamy virus allenopithecus nigroviridis; callithrix jacchus; cercocebus agilis; cercocebus torquatus; cercopithecus albogularis; cercopithecus cephus; cercopithecus hamlyni; cercopithecus lhoesti; cercopithecus mona; cercopithecus neglectus; chlorocebus aethiops; chlorocebus pygerythrus; chlorocebus sabaeus; colobus guereza; erythrocebus patas; gorilla gorilla; Homo sapiens; hylobates pileatus; lophocebus albigena; lophocebus aterrimus; macaca arctoides; macaca balantak; macaca fascicularis; macaca fuscata; macaca maura; macaca mulatta; macaca nemestrina; macaca radiata; macaca silenus; macaca sylvanus; macaca thibetana; macaca tonkeana; mandrillus leucophaeus; mandrillus sphinx; miopithecus talapoin; nomascus leucogenys; pan paniscus; pan troglodytes; papio anubis; papio cynocephalus; papio hamadryas; papio papio; papio ursinus; piliocolobus badius; piliocolobus tephrosceles; pongo abelii; pongo pygmaeus; pygathrix nemaeus; theropithecus gelada; trachypithecus francoisi infection 10633 Simian virus 40 Homo sapiens; macaca mulatta infection 37705 Sin Nombre virus Homo sapiens; peromyscus californicus; peromyscus leucopus; peromyscus maniculatus; peromyscus truei; reithrodontomys megalotis Hantavirus Pulmonary Syndrome (HPS) 11034 Sindbis virus aedes cinereus; anopheles maculipennis; culex annulirostris; culex bitaeniorhynchus; culex torrentium; culex tritaeniorhynchus; Homo sapiens; motacilla alba; ornithonyssus bursa Pogosta_disease Fever; joint pain 11580 Snowshoe hare virus Homo sapiens; rodents; mosquitoes Encephalitis 11984 Southampton virus Homo sapiens Gastroenteritis 11080 St Louis encephalitis virus aedes aegypti; anopheles albitarsis; anopheles triannulatus; butorides virescens; calomys musculinus; cebus apella; colaptes auratus; conopophaga aurita; culex coronator; culex declarator; culex nigripalpus; culex pipiens; culex quinquefasciatus; culex tarsalis; didelphis marsupialis; gallus gallus; geotrygon montana; haemagogus equinus; Homo sapiens; hypocnemis cantator; mus musculus; myiobius barbatus; myrmotherula hauxwelli; ochlerotatus scapularis; passer domesticus; procyon lotor; psorophora ferox; quiscalus quiscula; saltator maximus; willisornis poecilinotus; zenaida macroura Encephalitis 186540 Sudan ebolavirus Homo sapiens Ebola hemorrhagic fever 10345 Suid herpesvirus 1 bos taurus; canis lupus; canis lupus familiaris; felis catus; Homo sapiens; ovis aries; procyon lotor; sus scrofa; sus scrofa domesticus pseudorabies 12075 Swine vesicular disease virus Homo sapiens; sus scrofa; sus scrofa domesticus infection 611707 Tacaiuma virus Homo sapiens; mosquitoes infection 45270 Tahyna virus Homo sapiens fever; headache; malaise; conjunctivitis; pharyngitis; nausea 186541 Tai Forest ebolavirus Homo sapiens Hemorrhagic fever 1453410 Tamdy virus Homo sapiens infection 99000 Tanapox virus Homo sapiens infection 1623310 Tataguine virus Homo sapiens infection 11084 Tick-borne encephalitis virus Homo sapiens; ticks Encephalitis 11083 Tick-borne powassan virus Homo sapiens; phacochoerus africanus; sus barbatus; sus celebensis; sus scrofa; sus verrucosus Encephalitis 68887 Torque teno virus Homo sapiens infection but no disease 11590 Toscana virus Homo sapiens; mosquitoes Hemorrhagic fever 11569 Thogoto virus Homo sapiens febrile illness 11084 Tick-borne encephalitis virus apodemus agrarius; apodemus speciosus; apodemus sylvaticus; capra hircus; cricetulus barabensis; haemaphysalis longicornis; Homo sapiens; ixodes hexagonus; ixodes pavlovskyi; ixodes persulcatus; ixodes ricinus; macaca sylvanus; microtus gregalis; microtus oeconomus; mus musculus; myodes glareolus; myodes rufocanus; ovis aries; spermophilus undulatus Encephalitis 687379 Torque teno midi virus 1 Homo sapiens infection 687380 Torque teno midi virus 2 Homo sapiens infection 687369 Torque teno mini virus 1 Homo sapiens infection 687373 Torque teno mini virus 5 Homo sapiens infection 687374 Torque teno mini virus 6 Homo sapiens infection 687376 Torque teno mini virus 8 Homo sapiens infection 687349 Torque teno virus 10 Homo sapiens infection 687348 Torque teno virus 9 Homo sapiens infection 1678230 Trubanaman virus Homo sapiens infection 40004 Tyuleniy virus Homo sapiens infection 64286 Usutu virus culex pipiens; Homo sapiens; parus major; turdus merula infection 11591 Uukuniemi virus Homo sapiens; ticks Hemorrhagic fever 10245 Vaccinia virus alouatta caraya; bos taurus; bubalus bubalis; cebus apella; equus caballus; Homo sapiens; mus musculus; oryctolagus cuniculus infection 10335 Varicella zoster virus Homo sapiens Chickenpox; shingles (Herpes zoster) 10255 Variola virus Homo sapiens Smallpox (Variola) 11036 Venezuelan equine encephalitis virus aedes aegypti; bos taurus; culex coronator; culex mollis; culex portesi; equus caballus; Homo sapiens; ochlerotatus scapularis; sus scrofa; sus scrofa domesticus Venezuelan equine encephalitis 35612 Vesicular exanthema of swine virus bos taurus; callorhinus ursinus; Homo sapiens; mephitis mephitis; sus scrofa; sus scrofa domesticus; zalophus californianus Foot-and-Mouth Disease (FMD) and Swine Vesicular Disease (SVD) 11276 Vesicular stomatitis virus Homo sapiens; cattle; horse; pig; flies Encephalitis 40067 Wad Medani virus Homo sapiens; ticks infection 11571 Wanowrie virus Homo sapiens; ticks infection 164416 Wesselsbron virus aedes circumluteolus; aedes mcintoshi; bos taurus; capra hircus; desmodillus auricularis; equus caballus; Homo sapiens; mansonia uniformis; ovis aries infection 11039 Western equine encephalitis virus culex tarsalis; equus caballus; gopherus berlandieri; Homo sapiens; ochlerotatus dorsalis; sciurus griseus; zonotrichia leucophrys Fever; joint pain 11082 West Nile Virus accipiter cooperii; accipiter gentilis; aedes albopictus; aedes cinereus; aedes vexans; aegypius monachus; agelaius phoeniceus; anas querquedula; anopheles messeae; anopheles subpictus; anser anser; aquila chrysaetos; argynnis pandora; athene noctua; bonasa umbellus; branta canadensis; bubo virginianus; bubulcus ibis; buteo jamaicensis; buteo lineatus; butorides virescens; canis lupus; canis lupus familiaris; carios capensis; carpodacus mexicanus; colaptes auratus; columba livia; corvus brachyrhynchos; corvus corax; corvus cornix; corvus corone; corvus frugilegus; culex annulirostris; culex bitaeniorhynchus; culex interrogator; culex nigripalpus; culex pipiens; culex pseudovishnui; culex quinquefasciatus; culex restuans; culex salinarius; culex tarsalis; culex univittatus; culex vishnui; culex whitmorei; culiseta melanura; cyanocitta cristata; dermacentor marginatus; equus caballus; falco columbarius; falco punctatus; falco sparverius; gallus gallus; garrulus glandarius; Homo sapiens; mephitis mephitis; mesocricetus auratus; mimus polyglottos; molothrus ater; mus musculus; ochlerotatus canadensis; ochlerotatus cantator; ochlerotatus sollicitans; ochlerotatus sticticus; ochlerotatus triseriatus; ochlerotatus trivittatus; ovis aries; passer domesticus; phalacrocorax carbo; pica pica; poecile atricapilla; psorophora ferox; quiscalus quiscula; rana ridibundus; rousettus leschenaultii; sciurus carolinensis; sciurus niger; sus scrofa; sus scrofa domesticus; turdus merula; turdus migratorius; zenaida macroura Hemorrhagic fever; West Nile Fever 46919 Whitewater Arroyo virus Homo sapiens nonspecific febrile symptoms including fever; headache; myalgias 440266 WU polyomavirus Homo sapiens infection 273350 Wyeomyia virus Homo sapiens; mosquitoes febrile illness 38804 Yaba monkey tumor virus Homo sapiens; Monkeys infection 10282 Yatapoxvirus Homo sapiens infection 11089 Yellow fever virus aedes aegypti; aedes africanus; aedes furcifer; aedes luteocephalus; aedes taylori; aedes vittatus; alouatta caraya; alouatta seniculus; erythrocebus patas; Homo sapiens; mesocricetus auratus; sabethes albiprivus Hemorrhagic fever; Yellow fever 1712572 Yogue virus Bats; Homo sapiens infection 186538 Zaire ebolavirus cavia porcellus; gorilla beringei; gorilla gorilla; Homo sapiens; pan troglodytes Hemorrhagic fever 64320 Zika virus Homo sapiens; Monkeys; mosquitoes Fever; joint pain; rash 11588 Zinga virus Homo sapiens Rift Valley Fever 63407 Aarthroderma vanbreuseghemii Canis lupus; Canis lupus familiaris; Cavia porcellus; Chinchilla brevicaudata; Chinchilla lanigera; Equus caballus; Felis catus; Homo sapiens; mustela lutreola; oryctolagus cuniculus; Rattus norvegicus dermatophytoses 42458 Absidia corymbifera Homo sapiens infections 65658 Acanthamoeba astronyxis Homo sapiens eye, brain,skin infections 5754 Acanthamoeba byersi Homo sapiens eye, brain,skin infections 5755 Acanthamoeba castellanii Homo sapiens eye, brain,skin infections 43142 Acanthamoeba culbertsoni Homo sapiens eye, brain,skin infections 65660 Acanthamoeba hatchetti Homo sapiens eye, brain,skin infections 5754 Acanthamoeba keratitis Homo sapiens eye, brain,skin infections 29196 Acanthamoeba lenticulata Homo sapiens eye, brain,skin infections 61605 Acanthamoeba lugdunensis Homo sapiens eye, brain,skin infections 196912 Acanthamoeba mauritaniensis Homo sapiens eye, brain,skin infections 28015 Acanthamoeba palestinensis Homo sapiens eye, brain,skin infections 5757 Acanthamoeba polyphaga Homo sapiens eye, brain,skin infections 211522 Acanthamoeba quina Homo sapiens eye, brain,skin infections 32599 Acanthamoeba rhysodes Homo sapiens eye, brain,skin infections 146752 Acanthamoeba triangularis Homo sapiens eye, brain,skin infections 185725 Acanthocephalus rauschi Homo sapiens infections 116914 Achillurbainia nouveli Homo sapiens infections 116914 Achillurbainia recondita Homo sapiens infections 35720 Acremonium alabamense Homo sapiens infections 687987 Acremonium curvulum Homo sapiens infections 195108 Acremonium falciforme Homo sapiens infections 45277 Acremonium kiliense Homo sapiens infections 281365 Acremonium potronii Homo sapiens infections 1036759 Acremonium recifei Homo sapiens infections 1036752 Acremonium roseogriseum Homo sapiens infections 5046 Acremonium strictum Homo sapiens infections 391091 Acrophialophora fusispora Homo sapiens infections 64647 Actinomucor elegans Homo sapiens; philanthus triangulum infections 5037 Ajellomyces capsulatus artibeus hirsutus; Bos taurus; Canis lupus familiaris; desmodus rotundus; Equus caballus; Felis catus; Homo sapiens; leptonycteris curasoae; leptonycteris nivalis; meles meles; molossus molossus; ovis aries; pteronotus davyi; Sus scrofa; tadarida brasiliensis infections 5039 Ajellomyces dermatitidis Canis lupus familiaris; Felis catus; Homo sapiens infections 138589 Alaria americana Canis lupus familiaris; Felis catus; Homo sapiens; Didelphis virginiana; Procyon lotor ;Mephitis mephitis; Spiglogale putrorius; Vulpes fulva; Urocyon cinereoargeteu infections 1684801 Alaria marcianae Canis lupus familiaris; Felis catus; Homo sapiens; Didelphis virginiana; Procyon lotor ;Mephitis mephitis; Spiglogale putrorius; Vulpes fulva; Urocyon cinereoargeteu infections 911350 Albugo candida plants white rust; white blister disease 890382 Albugo laibachii plants white rust; white blister disease 5599 Alternaria alternata plants; Homo sapiens leaf spot; rot; blights; allergies; asthma; repiratory tract infections 1342384 Alternaria caespitosa plants leaf spot; rot; blights 119957 Alternaria chartarum plants leaf spot; rot; blights 1187911 Alternaria chlamydospora plants leaf spot; rot; blights 160388 Alternaria dianthicola plants leaf spot; rot; blights 45303 Alternaria infectoria plants leaf spot; rot; blights 160389 Alternaria longipes plants leaf spot; rot; blights 652027 Alternaria malorum plants leaf spot; rot; blights 5598 Alternaria stemphyloides plants leaf spot; rot; blights 119927 Alternaria tenuissima plants leaf spot; rot; blights 216836 Alternaria triticina plants leaf spot; rot; blights 197564 Amphimerus pseudofelineus Felis catus; Homo sapiens infections 119100 Anatrichosoma cutaneum Homo sapiens infections 369059 Ancylostoma braziliense Canis lupus familiaris; Felis catus; Homo sapiens infections 29170 Ancylostoma caninum canis latrans; Canis lupus; Canis lupus familiaris; Homo sapiens; vulpes vulpes infections 53326 Ancylostoma ceylanicum Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens; mesocricetus auratus infections 51022 Ancylostoma duodenale Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens; mesocricetus auratus infections 29169 Ancylostoma malayanum Canis lupus familiaris; Homo sapiens infections 6313 Angiostrongylus cantonensis Canis lupus familiaris; Homo sapiens; niviventer andersoni; parmarion martensi; pomacea insularum; Rattus norvegicus; Rattus rattus infections 334426 Angiostrongylus costaricensis Homo sapiens; Mus musculus; sigmodon hispidus infections 290545 Anisakis physeteris auxis thazard; beryx splendens; etmopterus spinax; Homo sapiens; merluccius polli; pagellus bogaraveo; physeter catodon; sotalia fluviatilis; synaphobranchus kaupii; ziphius cavirostris infections 6269 Anisakis simplex belone belone; clupea harengus; cololabis saira; eleginus navaga; gadus morhua; gadus ogac; globicephala melas; Homo sapiens; macrourus berglax; melanogrammus aeglefinus; micromesistius poutassou; myctophum punctatum; myoxocephalus scorpius; notothenia coriiceps; oncorhynchus gorbuscha; oncorhynchus keta; oncorhynchus nerka; pagellus bogaraveo; pollachius virens; reinhardtius hippoglossoides; salmo salar; scomber scombrus; theragra chalcogramma; todarodes pacificus; trachyrincus scabrus infections 723287 Anncaliia algerae anopheles stephensi; Homo sapiens infections 1457282 Aonchotheca philippinensis Homo sapiens infections 73174 Aphanoascus fulvescens Homo sapiens adiaspiromycosis 112090 Aphanomyces astaci crayfish infections 157072 Aphanomyces invadans crayfish infections 1124784 Apophallus donicus fish; Homo sapiens infections 90269 Apophysomyces elegans Homo sapiens infections 130043 Arachnomyces nodosetosus Homo sapiens infections 112178 Arthrinium phaeospermum Homo sapiens infections 63400 Arthroderma benhamiae atelerix albiventris; Canis lupus; Canis lupus familiaris; Cavia porcellus; erethizon dorsatum; erinaceus europaeus; Felis catus; Homo sapiens infections 1592208 Arthroderma cajetanum Homo sapiens infections 63401 Arthroderma fulvum Homo sapiens infections 63403 Arthroderma grubyi Homo sapiens infections 63402 Arthroderma gypseum Homo sapiens; oryctolagus cuniculus infections 119676 Arthroderma obtusum Homo sapiens; Sus scrofa; Sus scrofa domesticus infections 63405 Arthroderma otae Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens; oryctolagus cuniculus; Sus scrofa infections 63406 Arthroderma simii gallus gallus; Homo sapiens infections 241728 Arthrographis kalrae felis silvestris; Homo sapiens infections 408853 Artyfechinostomum mehrai Pila scutata; Lymnaea cumingiana; Digoniostoma pulchella infections 6252 Ascaris lumbricoides Homo sapiens; Sus scrofa; Sus scrofa domesticus Ascariasis 6253 Ascaris suum Bos taurus; Homo sapiens; ovis aries; Sus scrofa; Sus scrofa domesticus Ascariasis 1124786 Ascocotyle sp. fish; birds; Homo sapiens infections 487661 Aspergillus aculeatinus plants infections 5054 Aspergillus amstelodami Homo sapiens Aspergillosis 105351 Aspergillus awamori plants infections 454130 Aspergillus calidoustus Homo sapiens infections 41067 Aspergillus candidus Homo sapiens; phakellia fusca Aspergillosis 40993 Aspergillus carbonarius plants infections 5057 Aspergillus clavatus Homo sapiens Aspergillosis 36630 Aspergillus fischerianus plants infections 41900 Aspergillus flavipes Homo sapiens Aspergillosis 5059 Aspergillus flavus Canis lupus; Canis lupus familiaris; gorgonia ventalina; Homo sapiens; philanthus triangulum Aspergillosis 746128 Aspergillus fumigatus alcyonidium gelatinosum; carcharodon carcharias; dendroctonus rufipennis; Homo sapiens; meleagris gallopavo; phakellia fusca Aspergillosis 41413 Aspergillus glaucus Homo sapiens Aspergillosis 176169 Aspergillus granulosus Homo sapiens Aspergillosis 469274 Aspergillus insuetus Homo sapiens Aspergillosis 293939 Aspergillus lentulus Homo sapiens Aspergillosis 162425 Aspergillus nidulans Homo sapiens Aspergillosis 5061 Aspergillus niger Bos taurus; Canis lupus; Canis lupus familiaris; Capra hircus; Equus caballus; Felis catus; gorgonia ventalina; Homo sapiens; ovis aries; Sus scrofa; Sus scrofa domesticus Aspergillosis 340412 Aspergillus novofumigatus Homo sapiens Aspergillosis 40380 Aspergillus ochraceus gorgonia ventalina; Homo sapiens; phakellia fusca; Bos taurus Aspergillosis 5062 Aspergillus oryzae bombyx mori; Homo sapiens Aspergillosis 41959 Aspergillus penicillioides Homo sapiens Aspergillosis 306094 Aspergillus persii Homo sapiens infections 41735 Aspergillus quadrilineatus Homo sapiens Aspergillosis 41736 Aspergillus rugulosus Homo sapiens infections 75750 Aspergillus sydowii Canis lupus; Canis lupus familiaris; diabrotica virgifera; Equus caballus; gorgonia ventalina; Homo sapiens; ostrinia nubilalis Aspergillosis 41984 Aspergillus tamarii Canis lupus; Canis lupus familiaris; gorgonia ventalina; Homo sapiens; philanthus triangulum infections 33178 Aspergillus terreus Canis lupus; Canis lupus familiaris; gorgonia ventalina; Homo sapiens Aspergillosis 478866 Aspergillus tritici Homo sapiens Aspergillosis 40381 Aspergillus tubingensis Canis lupus; Canis lupus familiaris; flustra foliacea; Homo sapiens infections 40381 Aspergillus unguis Homo sapiens infections 40382 Aspergillus ustus Homo sapiens Aspergillosis 46472 Aspergillus versicolor Canis lupus; Canis lupus familiaris; gorgonia ventalina; Homo sapiens Aspergillosis 75553 Aspergillus viridinutans Homo sapiens Aspergillosis 5066 Aspergillus wentii plants infections 357447 Aspergillus westerdijkiae plants infections 5580 Aureobasidium pullulans acropora formosa; diabrotica virgifera; Homo sapiens; steganacarus magnus infections 216969 Austrobilharzia terrigalensis birds; Homo sapiens infections 203537 Auxarthron umbrinum Homo sapiens infections 5865 Babesia bovis blastoceros dichotomus; bos indicus; Bos taurus; bubalus bubalis; Equus caballus; Homo sapiens; ixodes ricinus; odocoileus virginianus; rhipicephalus bursa infections 32595 Babesia divergens Bos taurus; capra ibex; capreolus capreolus; cervus elaphus; Homo sapiens; ixodes persulcatus; ixodes ricinus; meriones unguiculatus; oryctolagus cuniculus; rangifer tarandus redwater fever 323732 Babesia duncani Homo sapiens babesiosis 33632 Babesia gibsoni Bos taurus; Canis lupus; Canis lupus familiaris; Equus caballus; haemaphysalis longicornis; Homo sapiens; ovis aries; paguma larvata; rhipicephalus sanguineus; Sus scrofa babesiosis 5868 Babesia microti apodemus agrarius; apodemus argenteus; apodemus flavicollis; apodemus speciosus; Canis lupus; Canis lupus familiaris; eothenomys andersoni; Equus caballus; Homo sapiens; ixodes persulcatus; ixodes ricinus; ixodes scapularis; macaca fuscata; macaca mulatta; mesocricetus auratus; microtus agrestis; microtus arvalis; microtus oeconomus; myodes glareolus; myodes rufocanus; myodes rutilus; niviventer confucianus; procyon lotor; sciurus vulgaris babesiosis 171411 Babesia sp. EU1 deer; Homo sapiens babesiosis 66527 Balamuthia mandrillaris Homo sapiens Granulomatous Amebic Encephalitis 71585 Balantidium coli Canis lupus familiaris; gorilla gorilla; Homo sapiens; papio hamadryas; struthio camelus; Sus scrofa; Sus scrofa domesticus balantidiasis 34480 Basidiobolus ranarum Homo sapiens basidiobolomycosis 403673 Batrachochytrium dendrobatidis amphibians cchytridiomycosis 6259 Baylisascaris procyonis Canis lupus familiaris; Homo sapiens; procyon lotor infections 176275 Beauveria bassiana agrilus planipennis; anomala corpulenta; choristoneura fumiferana; cydia pomonella; dendroctonus ponderosae; dendroctonus rufipennis; diatraea saccharalis; dioryctria sylvestrella; dryocoetes autographus; euproctis chrysorhoea; galleria mellonella; Homo sapiens; hylurgops palliatus; hylurgus ligniperda; hypothenemus hampei; ips sexdentatus; ips typographus; leptinotarsa decemlineata; meligethes aeneus; monochamus alternatus; monochamus saltuarius; nilaparvata lugens; pieris rapae; reticulitermes flavipes; thaumetopoea pityocampa; tomicus piniperda infections 578851 Bertiella mucronata nonhuman primates; rodents; Australian marsupials; Homo sapiens Bertielliasis 578852 Bertiella studeri nonhuman primates; rodents; Australian marsupials; Homo sapiens Bertielliasis 1489893 Biatriospora mackinnonii Homo sapiens cutaneous phaeohyphomycosis 100590 Bilharziella polonica anas crecca; anas platyrhynchos; ardea cinerea; aythya fuligula; cygnus olor; grus grus; Homo sapiens; planorbis planorbis infections; swimmer's itch 91365 Bipolaris australiensis Homo sapiens infections 1230527 Bipolaris hawaiiensis Homo sapiens infections 145392 Bipolaris spicifera Homo sapiens infections 12968 Blastocystis hominis Bos taurus; Canis lupus familiaris; Equus caballus; Homo sapiens; Sus scrofa infections 5039 Blastomyces dermatitidis Homo sapiens blastomycosis 1095183 Blastoschizomyces capitatus Homo sapiens infections 1155702 Bolbosoma sp. Homo sapiens infections 135513 Bothriocephalus acheilognathi abbottina rivularis; andinoacara coeruleopunctatus; chanodichthys dabryi; chanodichthys erythropterus; coreius guichenoti; ctenopharyngodon idella; culter alburnus; cyprinus carpio; gambusia affinis; gnathopogon imberbis; hemiculter bleekeri; hemiculter leucisculus; Homo sapiens; labeobarbus nedgia; luciobrama macrocephalus; opsariichthys bidens; poecilia mexicana; poecilia reticulata; schizothorax pseudoaksaiensis; squaliobarbus curriculus; xenophysogobio boulengeri; xiphophorus hellerii; zacco platypus infections 1342384 Botryomyces caespitosus Homo sapiens cutaneous phaeohyphomycosis 55169 Botryosphaeria dothidea plants roughened canker 45133 Botryosphaeria rhodina plants canker 371117 Botryosphaeria subglobosa plants infections 332648 Botryotinia fuckeliana plants gray mold disease 232682 Brachiola vesicularum Homo sapiens opportunistic infections 6278 Brugia beaveri Cats; Raccoons; Homo sapiens lymphatic filiariasis 6278 Brugia guyanensis coatis; grisons; Homo sapiens lymphatic filiariasis 6279 Brugia malayi Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens; meriones unguiculatus; presbytis cristata lymphatic filiariasis 6280 Brugia pahangi Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens; meriones unguiculatus lymphatic filiariasis 42155 Brugia timori Homo sapiens lymphatic filiariasis 577651 Bunostomum phlebotomum Bos taurus; Capra hircus; ovis aries; Homo sapiens infections 66065 Bunostomum trigonocephalum Capra hircus; capreolus capreolus; Homo sapiens; ovis aries infections 1367669 Calodium hepaticum mammals; Homo sapiens hepatic calodiasis 89418 Calyptrozyma arxii Homo sapiens infections 45518 Candida aaseri Homo sapiens Candidiasis 5476 Candida albicans Bos taurus; Canis lupus; Canis lupus familiaris; Capra hircus; Equus caballus; Felis catus; Homo sapiens; macrobrachium rosenbergii; ovis aries; pseudorca crassidens; steno bredanensis; Sus scrofa; Sus scrofa domesticus; tursiops aduncus; tursiops truncatus Candidiasis 273131 Candida bracarensis Homo sapiens Candidiasis 45537 Candida catenulata poultry; Homo sapiens Candidiasis 42374 Candida dubliniensis Homo sapiens Candidiasis 4959 Candida famata Homo sapiens infections 5478 Candida glabrata Bos taurus; Homo sapiens; tursiops aduncus Candidiasis 4929 Candida guilliermondii Homo sapiens Candidiasis 45357 Candida haemulonis Homo sapiens infections 52247 Candida inconspicua Homo sapiens infections 45354 Candida intermedia Homo sapiens infections 4911 Candida kefyr Homo sapiens Candidiasis 4909 Candida krusei Homo sapiens Candidiasis 53655 Candida lambica Homo sapiens infections 4952 Candida lipolytica Homo sapiens infections 36911 Candida lusitaniae Homo sapiens Candidiasis 273372 Candida metapsilosis Homo sapiens infections 418086 Candida nivariensis Homo sapiens infections 4921 Candida norvegensis Homo sapiens infections 273371 Candida orthopsilosis Homo sapiens infections 45574 Candida palmioleophila Homo sapiens infections 5480 Candida parapsilosis Bos taurus; Felis catus; Homo sapiens; phakellia fusca Candidiasis 5481 Candida rugosa Homo sapiens infections 5482 Candida tropicalis Bos taurus; Homo sapiens; pseudorca crassidens; tursiops truncatus Candidiasis 5486 Candida viswanathii Homo sapiens infections 5493 Candida zeylanoides eubalaena australis; Homo sapiens; orgyia pseudotsugata infections 5601 Capronia semiimmersa Homo sapiens infections 1434218 Catenulostroma abietis Homo sapiens infections 470132 Catenulostroma chromoblastomycosum Homo sapiens infections 296292 Cathaemasia cabrerai Homo sapiens infections 234882 Centrocestus armatus Homo sapiens infections 234883 Centrocestus formosanus Homo sapiens infections 77528 Cephaliophora irregularis Homo sapiens keratitis 273648 Cephalotheca foveolata Homo sapiens infections 345902 Cerinosterus cyanescens Homo sapiens infections 194684 Ceriporia lacerata Homo sapiens infections 460864 Chaetomium atrobrunneum Homo sapiens keratitis 155871 Chaetomium brasiliense Homo sapiens infections 79816 Chaetomium funicola Homo sapiens Chromoblastomycosis 38033 Chaetomium globosum Canis lupus; Canis lupus familiaris; Homo sapiens infections 5149 Chaetomium perpulchrum Homo sapiens infections 1170767 Chaetomium strumarium Homo sapiens infections 565397 Chaetophoma dermo-unguis Homo sapiens infections 652027 Chalastospora gossypii Homo sapiens infections 378100 Cheilospirura sp. Homo sapiens infections 472572 Chilomastix mesnili Homo sapiens None 90267 Chlamydoabsidia padenii Homo sapiens infections 40126 Chrysonilia sitophila Homo sapiens infections 82108 Cladophialophora arxii Homo sapiens infections 89940 Cladophialophora bantiana Felis catus; Homo sapiens infections 82106 Cladophialophora boppii Homo sapiens infections 86049 Cladophialophora carrionii Homo sapiens; lagenorhynchus obliquidens chromoblastomycosis 82107 Cladophialophora devriesii Homo sapiens haeohyphomycosis 585595 Cladorrhinum bulbillosum Homo sapiens keratitis 450181 Cladosporium bruhnei Homo sapiens infections 29917 Cladosporium cladosporioides Canis lupus; Canis lupus familiaris; diaphorina citri; gorgonia ventalina; Homo sapiens; ixodes scapularis; membranipora membranacea; oribatula tibialis infections 166633 Cladosporium cucumerinum cucumber infections 652621 Cladosporium elatum Homo sapiens infections 29919 Cladosporium oxysporum Homo sapiens infections 92950 Cladosporium sphaerospermum Homo sapiens; membranipora membranacea infections 891392 Cladosporium velox plants; Homo sapiens infections 36911 Clavispora lusitaniae Homo sapiens infections 235145 Clinostomum complanatum barbus barbus; barbus meridionalis; Homo sapiens; lepomis gibbosus; squalius cephalus infections 79923 Clonorchis sinensis Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens; prionailurus bengalensis; Sus scrofa infections 5501 Coccidioides immitis Canis lupus familiaris; Capra hircus; Equus caballus; Felis catus; Homo sapiens; Sus scrofa Valley fever 199306 Coccidioides posadasii Homo sapiens; lama glama Valley fever 1325487 Cochliobolus australiensis bromus catharticus; chloris gayana; Homo sapiens; jatropha curcas; oryza sativa infections 74411 Cochliobolus cynodontis C. dactylon; Homo sapiens infections 418126 Cochliobolus geniculata Homo sapiens; oryza sativa; zea mays; zoysia japonica; zoysia matrella; zoysia tenuifolia infections 1230527 Cochliobolus hawaiiensis Homo sapiens infections 5503 Cochliobolus lunatus plants; Homo sapiens infections 145392 Cochliobolus spicifera Homo sapiens infections 95740 Cochliobolus verruculosus chamaedorea elegans; Homo sapiens; paullinia cupana; triticum aestivum infections 90255 Cokeromyces recurvatus Homo sapiens infections 27358 Colletotrichum coccodes Homo sapiens infections 34405 Colletotrichum dematium aeschynomene americana; amorphophallus muelleri; crotalaria spectabilis; eryngium campestre; genista tinctoria; goniolimon tataricum; Homo sapiens; hosta sieboldiana; hydrangea macrophylla; medicago sativa; nicotiana tabacum; ophiopogon japonicus; passiflora edulis; persicaria pensylvanica; peucedanum praeruptorum; phaseolus lunatus; phytolacca acinosa; polygonatum falcatum; prunella vulgaris; reineckea carnea; satyrium nepalense; solanum tuberosum; sphagneticola trilobata; trillium viride; vitis vinifera; xanthium strumarium infections 474922 Colletotrichum gloeosporioides achyranthes aspera; aegle marmelos; allium cepa; annona cherimola; annona muricata; annona squamosa; aquilaria sinensis; arachis hypogaea; areca catechu; artemisia argyi; artemisia vulgaris; averrhoa carambola; azadirachta indica; bambusa bambos; barringtonia acutangula; calamagrostis x acutiflora; calathea plurispicata; calophyllum inophyllum; camellia oleifera; camellia sinensis; capsicum annuum; carica papaya; carya illinoinensis; cassia fistula; catharanthus roseus; chrysanthemum indicum; citrus aurantiifolia; citrus aurantium; citrus latifolia; citrus limon; citrus maxima; citrus reticulata; citrus sinensis; cocos nucifera; coffea arabica; coffea canephora; copernicia prunifera; cucumis sativus; cucurbita maxima; curcuma longa; cymbidium ensifolium; cymbidium sinense; dalbergia odorifera; datura metel; dendrobium thyrsiflorum; dianella caerulea; dioscorea alata; dioscorea polystachya; diospyros ferrea; diospyros kaki; dracaena cambodiana; eclipta prostrata; elaeis guineensis; elettaria cardamomum; eriobotrya japonica; erythrina variegata; euonymus japonicus; excoecaria agallocha; ficus carica; forsythia suspensa; fragaria x ananassa; fraxinus excelsior; glycine max; grevillea robusta; hemerocallis fulva; hevea brasiliensis; holcoglossum lingulatum; Homo sapiens; hoya carnosa; huperzia crispata; huperzia serrata; hylocereus undatus; hypericum japonicum; jasminum sambac; jatropha curcas; juglans regia; lagenaria siceraria; lantana camara; litchi chinensis; malus x domestica; mangifera indica; manihot esculenta; morus alba; musa acuminata; nothapodytes nimmoniana; olea europaea; osmanthus fragrans; pachira macrocarpa; paullinia cupana; persea americana; phedimus kamtschaticus; phlogacanthus thyrsiflorus; pholidota pallida; phytolacca acinosa; piper nigrum; populus deltoides; pourouma tomentosa; psidium guajava; pyrus x bretschneideri; quercus robur; quercus wutaishanica; rheum x hybridum; salsola tragus; saraca asoca; sarracenia minor; sarracenia oreophila; sarracenia psittacina; schefflera actinophylla; smallanthus sonchifolius; solanum betaceum; solanum cernuum; solanum lycopersicum; solanum tuberosum; sphagneticola trilobata; spondias dulcis; syzygium samarangense; taxus x media; tectaria incisa; theobroma cacao; tinospora cordifolia; trichosanthes kirilowii; tripterygium wilfordii; uraria picta; vaccinium corymbosum; vernonia cinerea; viscum album; vitex negundo; vitis heyneana; vitis vinifera infections 5467 Colletotrichum truncatum Homo sapiens infections 34488 Conidiobolus coronatus Equus caballus; Homo sapiens infections 90249 Conidiobolus incongruus Homo sapiens infections 90250 Conidiobolus lamprauges Homo sapiens; ovis aries infections 91930 Coniochaeta hoffmannii Homo sapiens infections 177205 Coniochaeta lignicola Homo sapiens infections 177207 Coniochaeta mutabilis Homo sapiens infections 135648 Coniothyrium fuckelii Homo sapiens infections 106324 Contracaecum osculatum Homo sapiens infections 71704 Coprinellus domesticus Homo sapiens infections 5346 Coprinopsis cinerea plants; eclipta prostrata; grevillea robusta; Homo sapiens; syzygium cumini infections 5346 Coprinus cinerea plants; eclipta prostrata; grevillea robusta; Homo sapiens; syzygium cumini infections 176275 Cordyceps bassiana agrilus planipennis; bombyx mori; choristoneura fumiferana; cnaphalocrocis medinalis; cydia pomonella; diabrotica undecimpunctata; diatraea saccharalis; dicladispa armigera; dryocoetes autographus; eldana saccharina; euproctis chrysorhoea; euschistus heros; galleria mellonella; Homo sapiens; hylurgops palliatus; hylurgus ligniperda; hyphantria cunea; hypothenemus hampei; ips sexdentatus; ips typographus; ixodes ricinus; leptinotarsa decemlineata; monochamus alternatus; monochamus saltuarius; nilaparvata lugens; pentalonia nigronervosa; pieris rapae; polistes jokahamae; reticulitermes flavipes; scyphophorus acupunctatus; sesamia inferens; sitona discoideus; spodoptera litura infections 279776 Corynascus kuwaitiensis plants; Homo sapiens infections 141827 Corynosoma strumosum Homo sapiens infections 5656 Crithidia fasciculata Homo sapiens infections 57679 Cryptococcus curvatus Homo sapiens infections 552467 Cryptococcus gattii acinonyx jubatus; Capra hircus; Homo sapiens infections 5418 Cryptococcus laurentii Homo sapiens infections 5207 Cryptococcus neoformans Bos taurus; Canis lupus familiaris; Capra hircus; columba livia; Equus caballus; eubalaena australis; Felis catus; Homo sapiens; Mus musculus; ovis aries; Sus scrofa; Sus scrofa domesticus infections 66766 Cryptocotyle lingua fish; Homo sapiens infections 117008 Cryptosporidium andersoni Bos taurus; bubalus bubalis; camelus bactrianus; camelus dromedarius; Capra hircus; Homo sapiens; mesocricetus auratus; ovis aries infections 27987 Cryptosporidium baileyi Homo sapiens infections 310047 Cryptosporidium bovis bos grunniens; Bos taurus; Capra hircus; Homo sapiens; ovis aries infections 195482 Cryptosporidium canis canis latrans; Canis lupus; Canis lupus familiaris; Homo sapiens infections 564424 Cryptosporidium cuniculus Homo sapiens; oryctolagus cuniculus infections 582425 Cryptosporidium fayeri Homo sapiens; macropus giganteus; perameles bougainville; petrogale xanthopus; phascolarctos cinereus infections 83540 Cryptosporidium felis Felis catus; felis silvestris; Homo sapiens infections 237895 Cryptosporidium hominis Bos taurus; Capra hircus; Homo sapiens; macaca mulatta; ovis aries infections 93969 Cryptosporidium meleagridis Canis lupus; Canis lupus familiaris; gallus gallus; Homo sapiens; meleagris gallopavo; nymphicus hollandicus; phoenicopterus chilensis; psittacula krameri infections 5808 Cryptosporidium muris apodemus speciosus; Bos taurus; camelus bactrianus; camelus dromedarius; Canis lupus; Canis lupus familiaris; Felis catus; giraffa camelopardalis; Homo sapiens; Mus musculus; oreamnos americanus; pantherophis guttatus; podargus strigoides; procavia capensis; pusa hispida; python regius; Rattus norvegicus; Rattus rattus; struthio camelus; Sus scrofa; tachyoryctes splendens; tamias sibiricus infections 5807 Cryptosporidium parvum anas platyrhynchos; apodemus flavicollis; apodemus sylvaticus; Bos taurus; bubalus bubalis; Canis lupus; Canis lupus familiaris; Capra hircus; cebus apella; cervus elaphus; cervus nippon; chamelea gallina; cheilodactylus variegatus; coturnix japonica; dolichotis patagonum; dugong dugon; equus asinus; Equus caballus; erinaceus europaeus; eublepharis macularius; Felis catus; fulica atra; galictis cuja; gallus gallus; hippotragus niger; Homo sapiens; iguana iguana; lagothrix lagotricha; lama glama; lama pacos; larus dominicanus; macaca mulatta; macaca sinica; macropus rufus; meleagris gallopavo; microtus arvalis; Mus musculus; mustela putorius; mustela putorius furo; myocastor coypus; myodes glareolus; mytilus edulis; nymphicus hollandicus; oryctolagus cuniculus; ovis aries; panthera tigris; pantherophis guttatus; papio hamadryas; phascolarctos cinereus; phasianus colchicus; procyon lotor; pterocnemia pennata; semnopithecus entellus; Sus scrofa; Sus scrofa domesticus; trachypithecus vetulus; zalophus californianus infections 857276 Cryptosporidium ubiquitum Bos taurus; Capra hircus; coendou prehensilis; Homo sapiens; Mus musculus; ovis aries infections 90251 Cunninghamella bertholletiae Homo sapiens infections 91365 Curvularia australiensis Homo sapiens infections 39400 Curvularia brachyspira Homo sapiens infections 95742 Curvularia clavata Homo sapiens infections 418126 Curvularia geniculata Homo sapiens infections 1230527 Curvularia hawaiiensis Homo sapiens infections 5503 Curvularia lunata colocasia esculenta; crotalaria juncea; cucumis sativus; echinochloa crus-galli; echinodorus scaber; fragaria x ananassa; halodule pinifolia; Homo sapiens; luehea divaricata; lycium chinense; oryza sativa; pterocarpus santalinus; setaria italica; solanum tuberosum; sorghum bicolor; syzygium cumini; theobroma cacao; triticum aestivum; zea mays infections 318706 Curvularia pallescens Homo sapiens infections 215132 Curvularia senegalensis Homo sapiens infections 145392 Curvularia spicifera Homo sapiens infections 1325487 Curvularia tsudae Homo sapiens infections 95740 Curvularia verucculosa chamaedorea elegans; Homo sapiens; paullinia cupana; triticum aestivum infections 4903 Cyberlindnera jadinii Homo sapiens infections 321341 Cyclodontostomum purvisi Homo sapiens infections 88456 Cyclospora cayetanensis Homo sapiens infections 13474 Cylindrocarpon cyanescens Homo sapiens infections 42744 Cylindrocarpon lichenicola Homo sapiens infections 13474 Cylindrocarpon vaginae Homo sapiens infections 241713 Cyphellophora laciniata Homo sapiens infections 29899 Cystobasidium minutum Homo sapiens infections 482538 Cystoisospora belli Homo sapiens cystoisosporiasis 27996 Cytauxzoon felis Felis catus; Homo sapiens infections 58627 Debaryomyces fabryi Homo sapiens infections 4959 Debaryomyces hansenii Homo sapiens; oncorhynchus mykiss infections 522693 Debaryomyces subglobosus Homo sapiens infections 1508212 Dichotomophthora portulacae purslane; Homo sapiens infections 467309 Dichotomophthoropsis nymphaerum Homo sapiens infections 483157 Dicrocoelium chinensis Homo sapiens infections 57078 Dicrocoelium dendriticum Bos taurus; Capra hircus; Homo sapiens; ovis aries; Sus scrofa infections 227982 Dicrocoelium hospes Homo sapiens infections 44689 Dictyostelium discoideum Homo sapiens infections 142831 Dictyostelium polycephalum Homo sapiens infections 749621 Didymella glomerata Homo sapiens infections 43352 Dientamoeba fragilis Homo sapiens infections 513045 Dioctophyme renale Canis lupus familiaris; Homo sapiens; neovison vison; Rattus norvegicus infections 114233 Dipetalonema arbuta porcupine; Homo sapiens infections 114233 Dipetalonema reconditum Homo sapiens infections 28844 Diphyllobothrium cameroni Hawaiian monk seal; Homo sapiens infections 372083 Diphyllobothrium cordatum Arctic seals; walruses; dogs; Homo sapiens infections 28844 Diphyllobothrium dalliae dog; arctic fox; Homo sapiens infections 28845 Diphyllobothrium dendriticum coregonus autumnalis; coregonus lavaretus; Homo sapiens; larus ridibundus; salvelinus alpinus; salvelinus leucomaenis infections 28844 Diphyllobothrium elegans marine mammals; Homo sapiens infections 28844 Diphyllobothrium erinaceieuropaei domestic animals; Homo sapiens infections 28844 Diphyllobothrium hians arctic seals; Homo sapiens infections 28844 Diphyllobothrium houghtoni cats; dogs; Homo sapiens infections 492325 Diphyllobothrium klebanovskii Homo sapiens infections 372084 Diphyllobothrium lanceolatum seals; dogs; Homo sapiens infections 60516 Diphyllobothrium latum Canis lupus familiaris; gymnocephalus cernuus; Homo sapiens; perca fluviatilis infections 28844 Diphyllobothrium mansonoides Homo sapiens infections 64604 Diphyllobothrium nihonkaiense bears; Canis lupus; Homo sapiens infections 28844 Diphyllobothrium orcini killer whale; Homo sapiens infections 372152 Diphyllobothrium pacificum Homo sapiens infections 28844 Diphyllobothrium scoticum seals; Homo sapiens infections 108521 Diphyllobothrium stemmacephalum porpoises; dolphins; Homo sapiens infections 28844 Diphyllobothrium theileri Homo sapiens infections 463145 Diplogonoporus balaenopterae whales; Homo sapiens infections 433351 Diplogonoporus brauni Homo sapiens infections 433351 Diplogonoporus fukuokaensis Homo sapiens infections 433352 Diplogonoporus grandis Homo sapiens infections 183647 Diplostomum spathaceum birds; fish; amphibians; reptiles; Homo sapiens infections 1095183 Dipodascus capitatus Homo sapiens infections 66787 Dipylidium caninum Canis lupus; Canis lupus familiaris; ctenocephalides felis; Felis catus; Homo sapiens; vulpes vulpes infections 6287 Dirofilaria immitis aedes aegypti; ailurus fulgens; canis latrans; Canis lupus; Canis lupus familiaris; culex pipiens; Felis catus; Homo sapiens; mustela putorius; mustela putorius furo; nyctereutes procyonoides; spheniscus humboldti; urocyon cinereoargenteus; vulpes vulpes heartworm disease 31241 Dirofilaria repens Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens infections 6286 Dirofilaria striata large cats; Homo sapiens infections 6286 Dirofilaria subdermata porcupine; Homo sapiens infections 6286 Dirofilaria tenuis racoons; Homo sapiens infections 658420 Dirofilaria ursi bears; Homo sapiens infections 4890 Dissitimurus exedrus Homo sapiens infections 186354 Doratomyces stemonitis Homo sapiens infections 331418 Dracunculus insignis Homo sapiens infections 318479 Dracunculus medinensis Bos taurus; Canis lupus familiaris; Homo sapiens infections 56819 Drechslera biseptata plants; Homo sapiens infections 1732538 Drepanidotaenia lanceolata Homo sapiens infections 1197313 Echinochasmus japonicus Homo sapiens infections 6209 Echinochasmus jiufoensis Homo sapiens infections 6209 Echinochasmus perfoliatus Homo sapiens infections 519352 Echinococcus canadensis alces alces; alces americanus; Bos taurus; camelus bactrianus; camelus dromedarius; Canis lupus; Canis lupus familiaris; Capra hircus; cervus elaphus; Homo sapiens; ovis aries; rangifer tarandus; Sus scrofa; Sus scrofa domesticus infections 6210 Echinococcus granulosus alces alces; bos grunniens; Bos taurus; bubalus bubalis; camelus bactrianus; camelus dromedarius; canis aureus; Canis lupus; Canis lupus familiaris; Capra hircus; Equus caballus; felis silvestris; Homo sapiens; lama pacos; meriones unguiculatus; ovis aries; ovis orientalis; Sus scrofa infections 6211 Echinococcus multilocularis alopex lagopus; canis latrans; Canis lupus; Canis lupus familiaris; castor fiber; Homo sapiens; meriones unguiculatus; microtus arvalis; microtus richardsoni; myodes rufocanus; nyctereutes procyonoides; ochotona curzoniae; vulpes vulpes infections 6212 Echinococcus oligarthrus Homo sapiens infections 6213 Echinococcus vogeli Canis lupus familiaris; Equus caballus; Homo sapiens infections 220794 Echinoparyphium recurvatum Homo sapiens; radix peregra infections 27847 Echinostoma cinetorchis Homo sapiens infections 27847 Echinostoma echinatum Homo sapiens infections 48216 Echinostoma hortense Homo sapiens infections 27847 Echinostoma ilocanum Homo sapiens infections 27847 Echinostoma jassyense Homo sapiens infections 27847 Echinostoma macrorchis Homo sapiens infections 711011 Echinostoma malayanum Homo sapiens infections 48217 Echinostoma revolutum Homo sapiens; lymnaea stagnalis; mesocricetus auratus; ondatra zibethicus; planorbella trivolvis; radix auricularia; radix peregra; stagnicola elodes; stagnicola palustris infections 1003232 Edhazardia aedis Homo sapiens infections 5801 Eimeria acervulina Gallus gallus infections 51314 Eimeria brunetti Gallus gallus infections 84963 Eimeria falciformis Mus musculus infections 5804 Eimeria maxima Gallus gallus infections 44415 Eimeria mitis Gallus gallus infections 51315 Eimeria necatrix Gallus gallus infections 51316 Eimeria praecox Gallus gallus infections 413949 Eimeria tenella Gallus gallus infections 162425 Emericella nidulans electra pilosa; Homo sapiens infections 41735 Emericella quadrilineata Homo sapiens infections 41736 Emericella rugulosa Homo sapiens infections 73230 Emmonsia crescens Homo sapiens infections 73231 Emmonsia parva Homo sapiens infections 6035 Encephalitozoon cuniculi alopex lagopus; Bos taurus; Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens; Mus musculus; oryctolagus cuniculus; Sus scrofa infections 27973 Encephalitozoon hellem agapornis roseicollis; cacatua alba; eclectus roratus; erythrura gouldiae; Homo sapiens; struthio camelus infections 58839 Encephalitozoon intestinalis Homo sapiens infections 5705 Endotrypanum monterogeii sanfly; Homo sapiens infections 37998 Engyodontium album Homo sapiens infections 110765 Entamoeba chattoni Homo sapiens infections 110766 Entamoeba coli gorilla gorilla; Homo sapiens; macaca fuscata; mandrillus leucophaeus; pan troglodytes infections 46681 Entamoeba dispar Homo sapiens infections 110767 Entamoeba hartmanni erythrocebus patas; Homo sapiens; lagothrix lagotricha; macaca sylvanus; pongo pygmaeus infections 5759 Entamoeba histolytica Canis lupus familiaris; Felis catus; Homo sapiens; macaca mulatta; meriones unguiculatus; mesocricetus auratus infections 370355 Entamoeba invadens reptiles infections 41668 Entamoeba moshkovskii Homo sapiens infections 1076696 Entamoeba nuttalli P19 Baboon; Macaques; Chimpanzees infections 110769 Entamoeba polecki Homo sapiens; macaca fascicularis; rhea americana; Sus scrofa; Sus scrofa domesticus infections 51027 Enterobius gregorii Homo sapiens infections 51028 Enterobius vermicularis Homo sapiens; pan troglodytes infections 31281 Enterocytozoon bieneusi Bos taurus; Canis lupus; Canis lupus familiaris; Equus caballus; Felis catus; Homo sapiens; lama glama; macaca mulatta; ondatra zibethicus; procyon lotor; Sus scrofa; Sus scrofa domesticus infections 105696 Epicoccum nigrum astacus astacus; Homo sapiens infections 34391 Epidermophyton floccosum Canis lupus familiaris; Homo sapiens athlete's foot 1776184 Episthmium caninum Canis lupus familiaris; Homo sapiens infections 1237089 Eucoleus aerophilus Canis lupus familiaris; Felis catus; Homo sapiens; vulpes vulpes infections 1431930 Eupenidiella venezuelensis Homo sapiens infections 5054 Eurotium amstelodami flustra foliacea; Homo sapiens; phascolarctos cinereus infections 374591 Eurytrema pancreaticum bos indicus; Bos taurus; Homo sapiens infections 513041 Eustrongylides sp. birds; fish; Homo sapiens infections 5970 Exophiala dermatitidis Homo sapiens infections 5584 Exophiala jeanselmei Homo sapiens infections 91926 Exophiala moniliae Homo sapiens infections 406760 Exophiala phaeomuriformis Homo sapiens infections 86051 Exophiala pisciphila Homo sapiens infections 91927 Exophiala psychrophila Atlantic salmon; Homo sapiens infections 43214 Exophiala salmonis Atlantic salmon; Homo sapiens infections 91928 Exophiala spinifera Homo sapiens infections 132106 Exserohilum longirostratum Homo sapiens infections 91494 Exserohilum macginnisii Homo sapiens infections 1489897 Falciformispora senegalensis Homo sapiens infections 1489896 Falciformispora tompkinsii Homo sapiens infections 46835 Fasciola gigantica bos indicus; bos primigenius; Bos taurus; bubalus bubalis; Capra hircus; Homo sapiens; ovis aries infections 6192 Fasciola hepatica bison bison; Bos taurus; bubalus bubalis; camelus bactrianus; camelus dromedarius; Capra hircus; capra pyrenaica; cervus elaphus; dama dama; Equus caballus; Homo sapiens; lymnaea columella; oryctolagus cuniculus; ovis aries infections 6191 Fasciola indica bos indicus; bos primigenius; Bos taurus; bubalus bubalis; Capra hircus; Homo sapiens; ovis aries infections 27845 Fasciolopsis buski Homo sapiens; Sus scrofa; Sus scrofa domesticus infections 1028498 Fibricola seoulensis Homo sapiens infections 86057 Fonsecaea compacta Homo sapiens infections 254056 Fonsecaea monophora Homo sapiens infections 40355 Fonsecaea pedrosoi Homo sapiens infections 1053102 Fusarium aquaeductuum plants infections 86545 Fusarium chlamydosporum Homo sapiens infections 57145 Fusarium dimerum Homo sapiens infections 195108 Fusarium falciforme caretta caretta; chelonia mydas; dermochelys coriacea; eretmochelys imbricata; Homo sapiens; lepidochelys olivacea; natator depressa; solanum tuberosum infections 229533 Fusarium graminearum plants infections 298378 Fusarium incarnatum atractylodes macrocephala; cucumis melo; eclipta prostrata; Homo sapiens; juglans regia; oryza sativa; panax ginseng; penaeus monodon; phoenix canariensis; solanum lycopersicum; triticum aestivum; vitis vinifera; zea mays infections 42744 Fusarium lichenicola plants; Homo sapiens infections 117187 Fusarium moniliforme adansonia gregorii; agave tequilana; apodytes dimidiata; aquilaria crassna; curcuma longa; curcuma wenyujin; dianthus caryophyllus; elaeis guineensis; eleusine coracana; erythrina velutina; ficus carica; fragaria virginiana; glycine max; Homo sapiens; huperzia crispata; huperzia selago; hylurgops palliatus; hylurgus ligniperda; ipomoea batatas; jatropha curcas; maxillaria brasiliensis; mikania micrantha; nicotiana tabacum; nothapodytes foetida; nothapodytes nimmoniana; orthotomicus erosus; oryza sativa; phyllanthus amarus; pinus sylvestris; salvia miltiorrhiza; saraca asoca; sesamum indicum; solanum melongena; syzygium cumini; theobroma cacao; triticum aestivum; zea mays infections 42672 Fusarium napiforme Homo sapiens; oryza sativa; zea mays infections 1325723 Fusarium neocosmosporiellum plants infections 5520 Fusarium nivale plants infections 5507 Fusarium oxysporum acyrthosiphon pisum; Homo sapiens; phascolarctos cinereus; philanthus triangulum; tylenchulus semipenetrans infections 298378 Fusarium pallidoroseum plants infections 44410 Fusarium polyphialidicum Homo sapiens infections 948311 Fusarium proliferatum abelmoschus esculentus; acanthaster planci; actinidia deliciosa; allium cepa; allium fistulosum; allium sativum; allium tuberosum; asparagus officinalis; bruguiera sexangula; carya illinoinensis; cicer arietinum; cycas revoluta; cyperus esculentus; dendrobium moschatum; echinochloa crus-galli; elephas maximus; Felis catus; ficus carica; glycine max; hevea brasiliensis; hevea guianensis; Homo sapiens; hylocereus undatus; hylurgops palliatus; ipomoea carnea; jatropha curcas; khaya anthotheca; lagenaria siceraria; lilium longiflorum; mangifera indica; morinda citrifolia; nicotiana tabacum; nothapodytes nimmoniana; ophiopogon japonicus; oryza sativa; panax ginseng; pancratium maritimum; paspalum wrightii; phoenix dactylifera; pourouma tomentosa; psidium guajava; robinia pseudoacacia; rumex acetosa; sabal palmetto; solanum lycopersicum; solanum melongena; sorghum bicolor; syagrus romanzoffiana; syzygium samarangense; taxus x media; theobroma cacao; vitis heyneana; vitis vinifera; zea mays infections 42676 Fusarium sacchari Homo sapiens; nothapodytes nimmoniana; saccharum officinarum; triticum aestivum; zea mays infections 169388 Fusarium solani atta texana; caretta caretta; dermochelys coriacea; Felis catus; Homo sapiens; marsupenaeus japonicus; unidentified nematode infections 42677 Fusarium subglutinans ananas comosus; holcus lanatus; Homo sapiens; mangifera indica; morinda citrifolia; nicotiana tabacum; nothapodytes nimmoniana; ophiopogon japonicus; orthotomicus erosus; zea mays infections 42327 Fusarium ventricosum plants infections 117187 Fusarium verticillioides adansonia gregorii; agave tequilana; apodytes dimidiata; aquilaria crassna; curcuma longa; curcuma wenyujin; dianthus caryophyllus; elaeis guineensis; eleusine coracana; erythrina velutina; ficus carica; fragaria virginiana; glycine max; Homo sapiens; huperzia crispata; huperzia selago; hylurgops palliatus; hylurgus ligniperda; ipomoea batatas; jatropha curcas; maxillaria brasiliensis; mikania micrantha; nicotiana tabacum; nothapodytes foetida; nothapodytes nimmoniana; orthotomicus erosus; oryza sativa; phyllanthus amarus; pinus sylvestris; salvia miltiorrhiza; saraca asoca; sesamum indicum; solanum melongena; syzygium cumini; theobroma cacao; triticum aestivum; zea mays infections 1053102 Fusicolla aquaeductuum plants; Homo sapiens infections 408852 Gastrodiscoides hominis pigs; Homo sapiens infections 69808 Geosmithia argillacea Homo sapiens infections 184922 Giardia Assemblage A, B, E Homo sapiens infections 5741 Giardia intestinalis alces alces; alouatta caraya; alouatta guariba; anas strepera; anser anser; ateles belzebuth; ateles fusciceps; bison bison; Bos taurus; bubalus bubalis; callithrix pygmaea; canis latrans; Canis lupus; Canis lupus familiaris; Capra hircus; capreolus capreolus; castor canadensis; Cavia porcellus; cercopithecus neglectus; cervus elaphus; Chinchilla lanigera; colobus guereza; dama dama; delphinus delphis; dolichotis patagonum; Equus caballus; eudorcas thomsonii; eulemur fulvus; eulemur rubriventer; Felis catus; gorilla gorilla; halichoerus grypus; hapalemur aureus; Homo sapiens; lama pacos; larus argentatus; lemur catta; lynx rufus; macaca fuscata; macaca sylvanus; mandrillus sphinx; Mus musculus; mustela putorius; mustela putorius furo; nyctereutes procyonoides; octodon degus; odocoileus virginianus; ondatra zibethicus; oryctolagus cuniculus; oryx leucoryx; ovis aries; pan troglodytes; papio hamadryas; peromyscus maniculatus; phoca vitulina; pithecia pithecia; pusa hispida; rangifer tarandus; Rattus norvegicus; saguinus oedipus; saimiri boliviensis; struthio camelus; Sus scrofa; Sus scrofa domesticus; tamandua tetradactyla; trachypithecus auratus; varecia rubra; varecia variegata; vulpes vulpes infections 184922 Giardia lamblia Homo sapiens infections 948311 Gibberella intermedia Felis catus; Homo sapiens; hylurgops palliatus infections 117187 Gibberella moniliformis Homo sapiens; hylurgops palliatus; hylurgus ligniperda; orthotomicus erosus infections 796325 Gibellulopsis nigrescens plants infections 100593 Gigantobilharzia huttoni snails; Homo sapiens infections 100593 Gigantobilharzia sturniae snails; Homo sapiens infections 1036752 Gliomastix roseogrisea Homo sapiens infections 61466 Gnathostoma binucleatum cathorops fuerthii; dormitator latifrons; eleotris picta; gobiomorus dormitor; Homo sapiens; parachromis managuensis; petenia splendida; rhamdia cinerascens; sciades guatemalensis infections 279402 Gnathostoma doloresi Homo sapiens; Sus scrofa infections 279404 Gnathostoma hispidum Homo sapiens infections 279403 Gnathostoma nipponicum Homo sapiens; mustela sibirica infections 75299 Gnathostoma spinigerum Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens infections 637853 Gongylonema pulchrum Bos taurus; cervus nippon; Homo sapiens; macaca fuscata; muntiacus reevesi; Sus scrofa; Sus scrofa leucomystax infections 118975 Graphium basitruncatum Homo sapiens infections 110365 Gregarina niphandrodes Tenebrio molitor; Homo sapiens infections 87179 Gymnophalloides sp. Homo sapiens infections 6289 Haemonchus contortus Bos taurus; Capra hircus; capreolus capreolus; giraffa camelopardalis; Homo sapiens; meriones unguiculatus; odocoileus virginianus; ovis aries; rupicapra rupicapra infections 114867 Halicephalobus Homo sapiens infections 657448 Hamiltosporidium tvaerminnensis Homo sapiens infections 99158 Hammondia hammondi Homo sapiens infections 4927 Hansenula anomala Homo sapiens infections 235154 Haplorchis pumilio anabas testudineus; Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens; hypophthalmichthys molitrix; melanoides tuberculata; Mus musculus; pangasianodon hypophthalmus; Trichogaster Trichopterus infections 235153 Haplorchis taichui Felis catus; Homo sapiens; labeo rohita; pangasianodon hypophthalmus infections 235152 Haplorchis vanissimus fish; mammals; pelicans; Homo sapiens infections 667377 Haplorchis yokogawai dogs; cats; mammals; Homo sapiens; mystus singaringan infections 39320 Heterobilharzia americana Canis lupus; Canis lupus familiaris; Equus caballus; Homo sapiens; procyon lotor infections 104454 Heterophyes dispar Homo sapiens infections 104454 Heterophyes heterophyes Canis lupus familiaris; Felis catus; Homo sapiens infections 104455 Heterophyes nocens Homo sapiens infections 1193295 Heterophyopsis continua Felis catus; Homo sapiens infections 220387 Himasthala muehlensi dogs; rats; Homo sapiens infections 5037 Histoplasma capsulatum Homo sapiens; membranipora membranacea infections 91943 Hortaea werneckii Homo sapiens tinea nigra 559515 Hyaloperonospora arabidopsidis Homo sapiens; Mus musculus infections 6205 Hydatigera taeniaeformis Homo sapiens infections 6216 Hymenolepis diminuta Canis lupus familiaris; Homo sapiens; Rattus norvegicus; Rattus rattus infections 102285 Hymenolepis nana Homo sapiens; mesocricetus auratus; Mus musculus; Rattus norvegicus infections 717740 Hyphopichia burtonii Homo sapiens infections 220810 Hypoderaeum conoideum fish; snails; Homo sapiens infections 6201 Inermicapsifer madagascariensis Homo sapiens; rodents infections 1660027 Inonotus tropicalis Homo sapiens infections 89141 Isaria farinosa Homo sapiens infections 114497 Isaria fumosorosea white fly infections 43265 Isaria javanica Homo sapiens infections 36663 Isoparorchis hypselobagri Homo sapiens infections 482538 Isospora belli Homo sapiens infections 4911 Kluyveromyces marxianus Homo sapiens infections 121752 Lacazia loboi acacia karroo; acacia mangium; acacia synchronicia; actinidia deliciosa; adansonia digitata; adansonia gregorii; adansonia za; anacardium excelsum; annona muricata; aquilaria crassna; aquilaria sinensis; araucaria cunninghamii; araucaria heterophylla; artocarpus altilis; artocarpus heterophyllus; azadirachta indica; camellia oleifera; carica papaya; casuarina cunninghamiana; cephalotaxus hainanensis; cocos nucifera; corymbia flavescens; crotalaria medicaginea; dimocarpus longan; diospyros kaki; eclipta prostrata; eucalyptus grandis; eucalyptus pellita; eucalyptus urophylla; ficus opposita; ficus trigona; grevillea robusta; hirtella americana; Homo sapiens; jatropha curcas; khaya anthotheca; khaya ivorensis; lagenaria siceraria; lysiphyllum cunninghamii; malus x domestica; mangifera indica; manihot esculenta; melia azedarach; musa acuminata; musa x paradisiaca; nephelium lappaceum; nothapodytes nimmoniana; pachira macrocarpa; paullinia cupana; persea americana; pholidota pallida; pinus caribaea; pinus elliottii; pinus patula; piper hispidum; piper nigrum; pistacia vera; prunus armeniaca; pseudophoenix sargentii; pterocarpus angolensis; pyrus communis; santalum album; saraca asoca; schizolobium amazonicum; senna siamea; solanum melongena; sophora japonica; syzygium cordatum; syzygium samarangense; terminalia catappa; terminalia ivorensis; terminalia mantaly; theobroma cacao; vitex negundo; vitis quinquangularis; vitis vinifera; zea mays infections 1783269 Lagochilascaris minor Felis catus; Homo sapiens infections 45133 Lasiodiplodia theobromae Canis lupus; Canis lupus familiaris; Homo sapiens infections 91930 Lecythophora hoffmannii Homo sapiens infections 177205 Lecythophora lignicola Homo sapiens infections 177207 Lecythophora mutabilis Homo sapiens infections 5667 Leishmania aethiopica Homo sapiens; hyraxes infections 5659 Leishmania amazonensis Homo sapiens; rodents infections 40284 Leishmania arabica Homo sapiens; wild animals infections 5660 Leishmania braziliensis aotus azarai; Canis lupus familiaris; Equus caballus; Felis catus; Homo sapiens; Rattus rattus infections 44271 Leishmania chagasi Canis lupus; Canis lupus familiaris; dusicyon thous; Homo sapiens; lutzomyia longipalpis infections 5661 Leishmania donovani Canis lupus; Canis lupus familiaris; Homo sapiens; mesocricetus auratus; phlebotomus argentipes; phlebotomus chinensis; Rattus rattus; sergentomyia minuta infections 5663 Leishmania enriettii Cavia porcellus infections 40285 Leishmania gerbilli Phlebotomus papatasi; gerbil; Homo sapiens infections 5670 Leishmania guyanensis sand fly; Homo sapiens infections 5671 Leishmania infantum Canis lupus; Canis lupus familiaris; cerdocyon thous; Homo sapiens; lutzomyia longipalpis; mesocricetus auratus; phlebotomus ariasi; phlebotomus papatasi; phlebotomus perfiliewi; phlebotomus tobbi; Rattus rattus; vulpes vulpes infections 5677 Leishmania lainsoni sand fly; Homo sapiens infections 5664 Leishmania major Homo sapiens; mesocricetus auratus; phlebotomus papatasi; Rattus rattus; rhombomys opimus infections 5665 Leishmania mexicana Canis lupus familiaris; Felis catus; Homo sapiens; lutzomyia ayacuchensis infections 155283 Leishmania venezuelensis sand fly; hamster; Homo sapiens infections 5678 Leishmania naiffi sand fly; Homo sapiens infections 5679 Leishmania panamensis sand fly; Homo sapiens infections 5681 Leishmania peruviana Homo sapiens; lutzomyia peruensis; lutzomyia verrucarum infections 5682 Leishmania pifanoi sand fly; Homo sapiens infections 5680 Leishmania shawi sand fly; Homo sapiens infections 5689 Leishmania tarentolae sand fly; lizards; Homo sapiens infections 5666 Leishmania tropica Canis lupus; Canis lupus familiaris; Homo sapiens; phlebotomus duboscqi; phlebotomus papatasi; phlebotomus sergenti; procavia capensis; rhombomys opimus infections 62297 Leishmania turanica sand fly; Homo sapiens infections 5684 Leptomonas seymouri Homo sapiens infections 1489897 Leptosphaeria senegalensis Homo sapiens infections 1489896 Leptosphaeria tompkinsii diabrotica virgifera; Homo sapiens infections 45303 Lewia infectoria Bos taurus; Homo sapiens infections 42458 Lichtheimia corymbifera Bos taurus; Cavia porcellus; Homo sapiens infections 688394 Lichtheimia ramosa Homo sapiens infections 94845 Ligula intestinalis fish; Homo sapiens infections 7209 Loa loa Homo sapiens; mandrillus sphinx infections 121759 Loboa loboi Homo sapiens; xylosandrus mutilatus infections 36914 Lodderomyces elongisporus Homo sapiens infections 41688 Lomentospora prolificans Homo sapiens infections 1032456 Macracanthorhynchus hirudinaceus Homo sapiens; Sus scrofa; Sus scrofa domesticus infections 60534 Macracanthorhynchus ingens Homo sapiens infections 1489895 Madurella grisea Homo sapiens infections 100816 Madurella mycetomatis Homo sapiens infections 242507 Magnaporthe oryzae rice rice blast 1095183 Magnusiomyces capitatus Canis lupus; Canis lupus familiaris; Homo sapiens infections 55194 Malassezia furfur Homo sapiens infections 76773 Malassezia globosa Homo sapiens infections 223818 Malassezia japonica Homo sapiens infections 76774 Malassezia obtusa Bos taurus; Canis lupus familiaris; Felis catus; Homo sapiens; Sus scrofa infections 77020 Malassezia pachydermatis Homo sapiens infections 76775 Malassezia restricta Capra hircus; Felis catus; Homo sapiens infections 76776 Malassezia slooffiae Bos taurus; Canis lupus; Canis lupus familiaris; Capra hircus; Equus caballus; Felis catus; Homo sapiens; ovis aries; Sus scrofa infections 76777 Malassezia sympodialis Homo sapiens infections 120855 Mammomonogamus laryngeus Bos taurus; Capra hircus; Equus caballus; Felis catus; Homo sapiens; ovis aries; Sus scrofa mammomonogamiasis 120855 Mammomonogamus nasicola Bos taurus; Capra hircus; Equus caballus; Felis catus; Homo sapiens; ovis aries; Sus scrofa mammomonogamiasis 122354 Mansonella ozzardi Homo sapiens infections 42231 Mansonella perstans Homo sapiens infections 42230 Mansonella rodhaini Homo sapiens infections 42230 Mansonella semiclarum Homo sapiens infections 42230 Mansonella streptocerca Homo sapiens infections 106947 Marshallagia marshalli Homo sapiens infections 1573891 Mathevotaenia symmetrica Homo sapiens infections 237660 Mecistocirrus digitatus sheep; cattle; buffalo; pig; Homo sapiens infections 1234271 Medicopsis romeroi Homo sapiens phaeohyphomycoses 747676 Melampsora iarici-populina Poplar trees leaf rust 0 Meningonema peruzzii African monkey; Homo sapiens infections 160008 Mesocestoides lineatus Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens; vulpes corsac; vulpes vulpes infections 53467 Mesocestoides variabilis mammals; lizards; birds; Homo sapiens infections 84527 Metagonimus minutus fish; Homo sapiens infections 1041114 Metagonimus miyatai fish; Homo sapiens infections 84528 Metagonimus takashii fish; Homo sapiens infections 84529 Metagonimus yokogawai Canis lupus familiaris; Felis catus; Homo sapiens; plecoglossus altivelis infections 858349 Metarhizium viride Canis lupus; Canis lupus familiaris; corydalus cornutus; dendroctonus adjunctus; dendroctonus approximatus; dendroctonus brevicomis; dendroctonus mexicanus; dendroctonus pseudotsugae; dendroctonus valens; helicoverpa armigera; Homo sapiens; ips pini; ostrinia nubilalis; poekilocerus pictus infections 475398 Metorchis conjunctus Felis catus; Homo sapiens metorchiasis 4929 Meyerozyma guilliermondii Homo sapiens infections 186339 Microascus cinereus Homo sapiens infections 5595 Microascus cirrosus Homo sapiens infections 0 Microfilaria bolivarensis Homo sapiens infections 114867 Micronema deletrix Equus caballus; Homo sapiens infections 34393 Microsporum audouinii Homo sapiens infections 63405 Microsporum canis Canis lupus familiaris; Felis catus; Homo sapiens infections 74041 Microsporum equinum Equus caballus; Homo sapiens infections 77205 Microsporum ferrugineum Homo sapiens infections 63401 Microsporum fulvum gallus gallus; Homo sapiens infections 69892 Microsporum gallinae Canis lupus familiaris; Equus caballus; Homo sapiens; oryctolagus cuniculus; ovis aries infections 63402 Microsporum gypseum Homo sapiens infections 74039 Microsporum langeronii Homo sapiens infections 119676 Microsporum nanum Homo sapiens infections 190483 Microsporum persicolor voles; field mice; dogs; Homo sapiens infections 328624 Microsporum praecox Homo sapiens infections 231010 Microsporum racemosum Homo sapiens infections 328623 Microsporum vanbreuseghemii Homo sapiens infections 1485682 Mitosporidium daphniae Homo sapiens infections 28841 Moniezia expansa sheep; goats; cattle; pigs; hom sapiens infections 64615 Moniliella suaveolens Homo sapiens; pelteobagrus fulvidraco infections 10237 Moniliformis moniliformis ats; mice; hamsters; dogs; cats; Homo sapiens infections 36080 Mucor circinelloides fragaria virginiana; holcus lanatus; Homo sapiens; malus x domestica; oribatella quadricornuta; phalaris arundinacea; taxus baccata infections 64493 Mucor hiemalis fragaria x ananassa; Homo sapiens infections 64623 Mucor indicus animals; homo sapiens Mucormycosis 4841 Mucor racemosus animals; homo sapiens Mucormycosis 90264 Mucor ramosissimus animals; homo sapiens Mucormycosis 6202 Multiceps brauni dogs; Homo sapiens infections 6202 Multiceps glomeratus dogs; Homo sapiens infections 6202 Multiceps longihamatus dogs; Homo sapiens infections 94034 Multiceps multiceps dogs; Homo sapiens infections 6202 Multiceps serialis dogs; Homo sapiens infections 78579 Myceliophthora thermophila Homo sapiens infections 227734 Mycocentrospora acerina plants infections 745397 Mycoleptodiscus indicus Homo sapiens infections 150376 Myriodontium keratinophilum Homo sapiens infections 470091 Myrmecridium schulzeri Homo sapiens infections 5763 Naegleria fowleri Homo sapiens infections 160659 Naegleria philippinensis Homo sapiens infections 1592208 Nannizzia cajetani animals; homo sapiens infections 240278 Nanophyetus salmincola Juga plicifera; Salmon; Homo sapiens infections 463686 Nattrassia mangiferae Homo sapiens infections 51031 Necator americanus Canis lupus familiaris; Felis catus; Homo sapiens; mesocricetus auratus; Sus scrofa infections 881290 Nematocida parisii Homo sapiens infections 28838 Nematodirus abnormalis cattle; sheep; Homo sapiens infections 71585 Neobalantidium coli Homo sapiens balantidiasis 1434218 Neocatenulostroma abietis arachis hypogaea; glycine max; Homo sapiens infections 1325723 Neocosmospora vasinfecta Homo sapiens; plants infections 371117 Neodeightonia subglobosa Homo sapiens infections 84101 Neodiplostomum sp. Homo sapiens infections 463686 Neofusicoccum mangiferae Homo sapiens infections 36630 Neosartorya fischeri Homo sapiens infections 75549 Neosartorya hiratsukae Homo sapiens infections 108428 Neoscytalidium dimidiatum Homo sapiens infections 1451147 Neoscytalidium hyalinum Homo sapiens infections 572307 Neospora caninum animals; homo sapiens infections 160030 Neotestudina rosatii Homo sapiens infections 5141 Neurospora crassa plants infections 510953 Neurospora discreta plants infections 40126 Neurospora sitophila plants infections 510951 Neurospora tetrasperma plants infections 114231 Nigrospora sphaerica plants; Homo sapiens leaf blight; infections 27977 Nosema africanum Homo sapiens infections 578461 Nosema bombycis Homo sapiens infections 578460 Nosema ceranae honey bee infections 27977 Nosema ceylonensis Homo sapiens infections 27977 Nosema connori Homo sapiens infections 27977 Nosema ocularum Homo sapiens infections 253628 Ochroconis gallopava Homo sapiens infections 228895 Ochroconis humicola Homo sapiens infections 883170 Oesophagostomum aculeatum livestock; Homo sapiens infections 61179 Oesophagostomum bifurcum cercopithecus mona; Homo sapiens; papio anubis infections 92252 Oesophagostomum stephanostomum livestock; Homo sapiens infections 78142 Oidiodendron cerealis Homo sapiens infections 459456 Onchocerca dewittei Homo sapiens; simulium bidentatum; Sus scrofa; Sus scrofa leucomystax infections 153009 Onchocerca lupi Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens infections 6282 Onchocerca volvulus Homo sapiens; simulium damnosum; simulium kilibanum; simulium neavei infections 130043 Onychocola canadensis Homo sapiens infections 147828 Opisthorchis felineus Canis lupus familiaris; Felis catus; Homo sapiens; vulpes vulpes infections 6197 Opisthorchis guayaquilensis Homo sapiens infections 1269762 Opisthorchis noverca Homo sapiens infections 41765 Opisthorchis sinensis Homo sapiens infections 6198 Opisthorchis viverrini bithynia funiculata; Canis lupus familiaris; Felis catus; Homo sapiens infections 174685 Ordospora colligata mammals; Homo sapiens infections 163369 Orientobilharzia turkestanica animals; homo sapiens infections 100595 Ornithobilharzia sp. animals; homo sapiens infections 6317 Ostertagia ostertagi Bos taurus; Capra hircus; Homo sapiens; ovis aries 4890 Ovadendron ochraceum Homo sapiens infections 4890 Ovadendron sulphureo-ochraceum Homo sapiens infections 89141 Paecilomyces farinosus Homo sapiens paecilomycosis 114497 Paecilomyces fumosoroseus Homo sapiens paecilomycosis 43265 Paecilomyces javanicus Homo sapiens paecilomycosis 33203 Paecilomyces lilacinus agrilus planipennis; graptopsaltria nigrofuscata; Homo sapiens; meloidogyne enterolobii; phakellia fusca; philanthus triangulum paecilomycosis 264951 Paecilomyces variotii grateloupia turuturu; grevillea robusta; Homo sapiens; huperzia crispata; saraca asoca; theobroma cacao; volvariella volvacea; zea mays paecilomycosis 858349 Paecilomyces viridis Canis lupus; Canis lupus familiaris; dasypus novemcinctus; Homo sapiens; pygoscelis adeliae paecilomycosis 1457282 Paracapillaria philippinensis fish; Homo sapiens infections 121759 Paracoccidioides brasiliensis Homo sapiens paracoccidioidomycosis 135648 Paraconiothyrium fuckelii Homo sapiens; membranipora membranacea infections 434055 Paragonimus africanus crustaceans; Homo sapiens Paragonimiasis 362703 Paragonimus bangkokensis crustaceans; Homo sapiens Paragonimiasis 34503 Paragonimus caliensis crustaceans; Homo sapiens Paragonimiasis 100268 Paragonimus heterotremus Canis lupus familiaris; Felis catus; Homo sapiens; indochinamon tannanti Paragonimiasis 34503 Paragonimus hueit'ungensis crustaceans; Homo sapiens Paragonimiasis 100269 Paragonimus kellicotti Canis lupus familiaris; Felis catus; Homo sapiens; indoplanorbis exustus; orconectes virilis Paragonimiasis 100270 Paragonimus mexicanus Tehuana guerreroensis; Homo sapiens Paragonimiasis 59628 Paragonimus miyazakii geothelphusa dehaani; Homo sapiens Paragonimiasis 59629 Paragonimus ohirai crustaceans; Homo sapiens Paragonimiasis 34503 Paragonimus phillipinensis crustaceans; Homo sapiens Paragonimiasis 62814 Paragonimus sadoensis crustaceans; Homo sapiens Paragonimiasis 100271 Paragonimus siamensis crustaceans; Homo sapiens Paragonimiasis 59630 Paragonimus skrjabini Canis lupus familiaris; Homo sapiens Paragonimiasis 34503 Paragonimus uterobilateralis Homo sapiens Paragonimiasis 34504 Paragonimus westermani Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens; maydelliathelphusa lugubris; Sus scrofa Paragonimiasis 6256 Parascaris equorum equus burchellii; Equus caballus; Homo sapiens infections 6313 Parastrongylus cantonensis Homo sapiens infections 334426 Parastrongylus costaricensis Homo sapiens infections 1647934 Pearsonema plica Canis lupus familiaris; Felis catus; Homo sapiens infections 35557 Pelodera strongyloides Homo sapiens Strongyloidiasis 116969 Penicillium biourgeianum Homo sapiens infections 5074 Penicillium brevicompactum Homo sapiens infections 201291 Penicillium brocae carcharodon carcharias; Homo sapiens; ixodes scapularis; phakellia fusca infections 5076 Penicillium chrysogenum Homo sapiens infections 69768 Penicillium citreonigrum acanthaster planci; acropora formosa; aquilaria crassna; arachis hypogaea; carapa guianensis; carcharodon carcharias; ceratonia siliqua; coffea arabica; cymodocea rotundata; enhalus acoroides; gorgonia ventalina; Homo sapiens; huperzia crispata; hyoscyamus muticus; ipomoea batatas; ixeris repens; medicago sativa; nicotiana tabacum; ocimum tenuiflorum; paspalum wrightii; phalaris arundinacea; salicornia bigelovii; salicornia herbacea; vitis vinifera infections 5077 Penicillium citrinum Homo sapiens infections 36653 Penicillium commune devaleraea ramentacea; Homo sapiens; mastocarpus stellatus; palmaria palmata infections 69771 Penicillium decumbens Homo sapiens infections 28565 Penicillium dupontii Homo sapiens infections 27334 Penicillium expansum Homo sapiens infections 5078 Penicillium griseofulvum Homo sapiens infections 37727 Penicillium marneffei arachis hypogaea; cyperus esculentus; Homo sapiens; phalaris arundinacea infections 1266744 Penicillium purpurogenum Homo sapiens infections 69783 Penicillium raistrickii Homo sapiens infections 1431930 Penidiella venezuelensis Homo sapiens infections 5728 Pentatrichomonas hominis Bos taurus; callithrix jacchus; Canis lupus familiaris; colobus angolensis; Felis catus; Homo sapiens; varecia variegata infections 268854 Phaeoacremonium venezuelense plants; Homo sapiens infections 66226 Phaeoannellomyces elegans Homo sapiens infections 66225 Phaeoannellomyces werneckii Homo sapiens infections 279291 Phaeomyces kuwaitiensis Homo sapiens infections 179659 Phaeotrichoconis crotalariae Homo sapiens infections 273507 Phanerochaete chrysosporium Homo sapiens infections 48140 Phanerochaete sordida plants infections 1550885 Phaneropsolus bonnei Homo sapiens infections 1093900 Phialemoniopsis curvata Canis lupus; Canis lupus familiaris; Homo sapiens infections 1093900 Phialemonium curvatum Homo sapiens infections 291973 Phialemonium obovatum Homo sapiens infections 91933 Phialophora bubakii Homo sapiens infections 40355 Phialophora pedrosoi Homo sapiens infections 91939 Phialophora repens Homo sapiens infections 41990 Phialophora richardsiae Homo sapiens infections 39412 Phialophora verrucosa Homo sapiens infections 685953 Philophthalmus lacrymosus Homo sapiens infections 6271 Phocanema decipiens Homo sapiens infections 798079 Phoma cava Homo sapiens infections 37463 Phoma cruris-hominis Homo sapiens infections 297020 Phoma eupyrena Homo sapiens infections 749621 Phoma glomerata Homo sapiens infections 73001 Phoma herbarum Homo sapiens infections 37463 Phoma hibernica Homo sapiens infections 37463 Phoma minutella Homo sapiens infections 37463 Phoma oculo-hominis Homo sapiens infections 763407 Phycomyces blakesleeanus Homo sapiens infections 55181 Phyllosticta citricarpa citrus trees citrus black spot 75558 Physaloptera caucasica animals; Homo sapiens infections 75558 Physaloptera transfuga animals; Homo sapiens infections 763924 Phytophthora capsici Cucurbits infections 622258 Phytophthora cinnamomi plants root rot; dieback 403677 Phytophthora infestans potato plants potato blight 761204 Phytophthora parasitica onion plants phytophthora neck and bulb rot 164328 Phytophthora ramorum trees sudden oak death 67593 Phytophthora sojae soybean Phytophthora root and stem rot 53655 Pichia fermentans Bos taurus; Equus caballus; Homo sapiens infections 4909 Pichia kudriavzevii Homo sapiens infections 4921 Pichia norvegensis Homo sapiens infections 147573 Piedraia hortae Homo sapiens infections 84104 Plagiorchis harinasutai Homo sapiens infections 84104 Plagiorchis javensis Homo sapiens infections 84105 Plagiorchis muris Homo sapiens infections 84104 Plagiorchis philippinensis Homo sapiens infections 5821 Plasmodium berghei rodents malaria 5825 Plasmodium chabaudi rodents malaria 31271 Plasmodium chabaudi chabaudi rodents malaria 208452 Plasmodium coatneyi rhesus macaques malaria 1120755 Plasmodium cynomolgi strain B primates; Homo sapiens malaria 5833 Plasmodium falciparum anopheles funestus; Bos taurus; cercopithecus nictitans; gorilla beringei; gorilla gorilla; Homo sapiens; Mus musculus; pan paniscus; pan troglodytes malaria 5849 Plasmodium gallinaceum Gallus gallus malaria 5850 Plasmodium knowlesi Homo sapiens; macaca fascicularis; macaca mulatta; macaca nemestrina malaria 5858 Plasmodium malariae Homo sapiens; pan paniscus; pan troglodytes malaria 36330 Plasmodium ovale Homo sapiens; pan troglodytes malaria 5854 Plasmodium reichenowi chimpanzee malaria 5859 Plasmodium simium Homo sapiens; saimiri sciureus malaria 5855 Plasmodium vivax Homo sapiens; pan troglodytes; pongo abelii; pongo pygmaeus malaria 352914 Plasmodium yoelii rodents malaria 565432 Pleurophoma pleurospora allenopithecus nigroviridis; apodemus sylvaticus; callimico goeldii; callithrix geoffroyi; callithrix jacchus; Canis lupus; Canis lupus familiaris; cercopithecus hamlyni; cercopithecus lhoesti; cercopithecus nictitans; eliomys quercinus; Equus caballus; Felis catus; gallus gallus; hapalemur griseus; Homo sapiens; macaca fascicularis; macaca mulatta; macaca nemestrina; meriones unguiculatus; microcebus murinus; microtus agrestis; Mus musculus; mustela putorius; mustela putorius furo; ovis aries; pithecia pithecia; Rattus norvegicus; saguinus fuscicollis; saguinus imperator; saguinus midas; saguinus oedipus; saimiri sciureus; sorex araneus infections 4754 Pneumocystis carinii Homo sapiens infections 42068 Pneumocystis jirovecii Homo sapiens infections 34502 Poikilorchis congolensis Homo sapiens infections 548582 Procerovum calderoni animals; homo sapiens infections 0 Prohemistomum vivax fish infections 99684 Prosthodendrium molenkampi Homo sapiens infections 3111 Prototheca wickerhamii Bos taurus; Homo sapiens infections 3112 Prototheca zopfii Homo sapiens infections 70116 Pseudallescheria angusta Bos taurus; Canis lupus familiaris; Equus caballus; Homo sapiens; phascolarctos cinereus; Sus scrofa infections 45271 Pseudallescheria ellipsoidea Homo sapiens infections 315945 Pseudallescheria minutispora Homo sapiens infections 524294 Pseudamphistomum aethiopicum mammals; Homo sapiens infections 524295 Pseudamphistomum truncatum mammals; Homo sapiens infections 5597 Pseudoallescheria boydii Homo sapiens infections 0 Pseudomicrodochium suttonii Homo sapiens infections 6271 Pseudoterranova decipiens chaenocephalus aceratus; cystophora cristata; enhydra lutris; eumetopias jubatus; halichoerus grypus; Homo sapiens; lophius americanus; mirounga angustirostris; osmerus eperlanus; phoca vitulina; zalophus californianus infections 0 Psilorchis hominis Homo sapiens infections 418459 Puccinia graminis cereal crops rust disease 33203 Purpureocillium lilacinum Homo sapiens infections 104472 Pygidiopsis summa Homo sapiens infections 0 Pyramicocephalus anthrocephalus Homo sapiens infections 798079 Pyrenochaeta cava guazuma ulmifolia; Homo sapiens infections 1489893 Pyrenochaeta mackinnonii annona squamosa; Homo sapiens; hordeum vulgare; mangifera indica infections 1234271 Pyrenochaeta romeroi Homo sapiens infections 555973 Pyrenochaeta unguis-hominis Homo sapiens infections 65070 Pythium aphanidermatum plants; Homo sapiens pythiosis 1223555 Pythium arrhenomanes ATCC plants; Bos taurus; Canis lupus; Canis lupus familiaris; Equus caballus; Felis catus; Homo sapiens; tremarctos ornatus pythiosis 114742 Pythium insidiosum plants; horses; dogs; Homo sapiens pythiosis 1223557 Pythium irregulare plants pythiosis 1223558 Pythium iwayamai plants pythiosis 431595 Pythium ultimum plants pythiosis 1223559 Pythium vexans plants pythiosis 345902 Quambalaria cyanescens Homo sapiens infections 70662 Raillietina celebensis vertebrates; Homo sapiens infections 70662 Raillietina demerariensis vertebrates; Homo sapiens infections 69808 Rasamsonia argillacea Homo sapiens infections 68826 Rasamsonia eburnea Homo sapiens infections 193076 Retortamonas intestinalis Homo sapiens infections 6244 Rhabditis elongata Homo sapiens infections 6244 Rhabditis inermis Homo sapiens infections 6244 Rhabditis niellyi Homo sapiens infections 6244 Rhabditis pellio Homo sapiens infections 37936 Rhinocladiella aquaspersa Homo sapiens infections 215248 Rhinocladiella basitona Homo sapiens infections 86057 Rhinocladiella compacta Homo sapiens infections 86056 Rhinocladiella mackenziei Homo sapiens infections 5587 Rhinocladiella obovoidea Homo sapiens infections 5587 Rhinocladiella schulzeri Homo sapiens infections 90339 Rhinosporidium seeberi horses; dogs; cattle; Homo sapiens rhinosporidiosis 4839 Rhizomucor miehei Bos taurus; channa punctata; Homo sapiens; phakellia fusca infections 4840 Rhizomucor pusillus Homo sapiens infections 488491 Rhizomucor tauricus Homo sapiens infections 86630 Rhizopus azygosporus plants; Homo sapiens infections 246409 Rhizopus delemar Homo sapiens; Sus scrofa infections 58291 Rhizopus microsporus allium cepa; aloe vera; Bos taurus; ciconia ciconia; codonopsis lanceolata; cotesia vestalis; Homo sapiens; ipomoea batatas; jatropha curcas; lagenaria siceraria; ocimum basilicum; phoenix dactylifera; prunus armeniaca; Sus scrofa; Sus scrofa domesticus; theobroma cacao; tursiops truncatus; zea mays infections 64495 Rhizopus oryzae Homo sapiens; ipomoea batatas; zea mays infections 58291 Rhizopus rhizopodiformis Homo sapiens infections 4846 Rhizopus stolonifer Homo sapiens infections 5535 Rhodotorula glutinis Homo sapiens infections 29899 Rhodotorula minuta acianthera hamosa; aquilaria sinensis; berkheya coddii; dactylis glomerata; digitalis lanata; drosera rotundifolia; electra pilosa; ficus benjamina; ficus elastica; ficus religiosa; Homo sapiens; malus x domestica; populus trichocarpa x populus deltoides; rumex hastatus; sphagnum girgensohnii; vitis vinifera infections 5537 Rhodotorula mucilaginosa Homo sapiens infections 5537 Rhodotorula rubra Homo sapiens infections 0 Rictularia sp. Homo sapiens infections 252598 Saccharomyces boulardii Bos taurus; gallus gallus; Homo sapiens; macrobrachium rosenbergii; mesocricetus auratus; Mus musculus; polistes dominulus; Rattus norvegicus; Sus scrofa; vespa crabro infections 4932 Saccharomyces cerevisiae Homo sapiens infections 931868 Saksenaea erythrospora Homo sapiens infections 90258 Saksenaea vasiformis Homo sapiens infections 1156394 Saprolegnia diclina fish; Homo sapiens infections 695850 Saprolegnia parasitica Homo sapiens infections 406760 Sarcinomyces phaeomuriformis Homo sapiens infections 61650 Sarcocystis hominis Bos taurus; bubalus bubalis; Homo sapiens infections 5812 Sarcocystis lindermanni Homo sapiens infections 42890 Sarcocystis neurona Homo sapiens infections 102713 Sarcocystis suihominis Homo sapiens; Sus scrofa infections 45277 Sarocladium kiliense Homo sapiens infections 5046 Sarocladium strictum Homo sapiens; trichechus manatus infections 563466 Scedosporium apiospermum Homo sapiens infections 315946 Scedosporium aurantiacum Homo sapiens infections 5597 Scedosporium boydii Homo sapiens infections 563467 Scedosporium dehoogii Homo sapiens infections 41688 Scedosporium inflatum Homo sapiens infections 315945 Scedosporium minutisporum Homo sapiens infections 41688 Scedosporium prolificans Homo sapiens infections 70667 Schistocephalus solidus Homo sapiens infections 6184 Schistosoma bovis bos indicus; Bos taurus; bulinus truncatus; Homo sapiens; ovis aries infections 6185 Schistosoma haematobium bulinus forskalii; bulinus globosus; bulinus nyassanus; bulinus truncatus; cercopithecus aethiops; Homo sapiens; papio anubis infections 6187 Schistosoma intercalatum Homo sapiens infections 6182 Schistosoma japonicum Bos taurus; Canis lupus familiaris; Capra hircus; Equus caballus; Felis catus; Homo sapiens; microtus fortis; oncomelania hupensis; ovis aries; Sus scrofa; Sus scrofa domesticus infections 53353 Schistosoma malayensis Homo sapiens infections 6183 Schistosoma mansoni arvicanthis niloticus; biomphalaria alexandrina; biomphalaria choanomphala; biomphalaria glabrata; biomphalaria pfeifferi; biomphalaria sudanica; biomphalaria tenagophila; Bos taurus; Canis lupus familiaris; Felis catus; Homo sapiens; meriones unguiculatus; mesocricetus auratus; Mus musculus; pan troglodytes; Rattus norvegicus; Rattus rattus infections 31246 Schistosoma mattheei Bos taurus; Homo sapiens; ovis aries; papio anubis; papio cynocephalus; papio hamadryas; papio papio; papio ursinus infections 38744 Schistosoma mekongi Homo sapiens; neotricula aperta infections 6188 Schistosoma rodhaini Homo sapiens infections 6189 Schistosoma spindale bos indicus; Bos taurus; Homo sapiens infections 163369 Schistosoma turkestanicum Homo sapiens infections 38741 Schistosomatium douthitti cattle; mice; Homo sapiens infections 5334 Schizophyllum commune Homo sapiens infections 402676 Schizosaccharomyces japonicus plants infections 483514 Schizosaccharomyces octosporus plants infections 284812 Schizosaccharomyces pombe plants infections 135513 Schyzocotyle acheilognathi Homo sapiens infections 665079 Sclerotinia sclerotiorum Homo sapiens infections 228895 Scolecobasidium humicola Homo sapiens infections 186355 Scopulariopsis acremonium Homo sapiens infections 186356 Scopulariopsis asperula Homo sapiens; phakellia fusca infections 561152 Scopulariopsis brevicaulis Homo sapiens infections 40376 Scopulariopsis brumptii Homo sapiens infections 186344 Scopulariopsis candida Homo sapiens infections 186360 Scopulariopsis flava Homo sapiens infections 186361 Scopulariopsis fusca Homo sapiens infections 1451147 Scytalidium hyalinum Homo sapiens infections 5538 Scytalidium infestans Homo sapiens infections 221942 Setaria equina Homo sapiens infections 45150 Setosphaeria rostrata Homo sapiens infections 771870 Sordaria macrospora Homo sapiens infections 304461 Spirocerca lupi Canis lupus; Canis lupus familiaris; Homo sapiens infections 99802 Spirometra erinaceieuropaei Canis lupus; Canis lupus familiaris; elaphe quadrivirgata; Felis catus; Homo sapiens; litoria caerulea; rana nigromaculata infections 645134 Spizellomyces punctatus Homo sapiens infections 999809 Sporisorium reilianum Homo sapiens infections 45794 Sporopachydermia lactativora Homo sapiens; zootermopsis nevadensis infections 402873 Sporothrix albicans Canis lupus; Canis lupus familiaris; Homo sapiens infections 545650 Sporothrix brasiliensis Homo sapiens infections 545652 Sporothrix mexicana Canis lupus; Canis lupus familiaris; Equus caballus; Homo sapiens infections 29908 Sporothrix schenckii Homo sapiens infections 1358809 Spraguea lophii fish infections 104478 Stellantchasmus falcatus Felis catus; Homo sapiens; Mus musculus infections 93486 Stenella araguata Homo sapiens infections 5617 Sterigmatomyces halophilus broussonetia papyrifera; eucommia ulmoides; Homo sapiens; ligustrum sinense; morus alba; prunus sibirica; strophanthus divaricatus infections 263426 Stictodora fuscata Homo sapiens infections 44441 Strongyloides fuelleborni gorilla gorilla; Homo sapiens; macaca fuscata; macaca mulatta; pan troglodytes; papio cynocephalus infections 174720 Strongyloides papillosus Bos taurus; Capra hircus; Homo sapiens; ovis aries infections 553534 Strongyloides ransomi pig infections 6248 Strongyloides stercoralis Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens; pan troglodytes infections 174724 Strongyloides westeri horses infections 412127 Syphacia obvelata rodents infections 60517 Taenia asiatica Homo sapiens infections 6207 Taenia crassiceps Canis lupus; Canis lupus familiaris; Homo sapiens; microtus fortis; microtus gregalis; microtus levis; microtus pennsylvanicus; Mus musculus; vulpes lagopus; vulpes vulpes infections 85431 Taenia hydatigena Canis lupus; Canis lupus familiaris; Homo sapiens; Felis catus infections 94034 Taenia multiceps Bos taurus; Canis lupus; Canis lupus familiaris; Capra hircus; Homo sapiens; ovis aries infections 6206 Taenia saginata Bos taurus; Homo sapiens infections 94035 Taenia serialis canis aureus; Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens; oryctolagus cuniculus; theropithecus gelada infections 6204 Taenia solium Homo sapiens; Sus scrofa; Sus scrofa domesticus infections 6205 Taenia taeniaeformis apodemus sylvaticus; arvicola terrestris; Canis lupus; Canis lupus familiaris; falco tinnunculus; Felis catus; Homo sapiens; microtus arvalis; Mus musculus; procyon lotor; Rattus norvegicus; Rattus rattus; vulpes vulpes infections 306688 Taeniolella exilis plants infections 306689 Taeniolella stilbospora Homo sapiens infections 68826 Talaromyces eburneus Homo sapiens infections 270746 Talaromyces indigoticus Homo sapiens infections 37727 Talaromyces marneffei Homo sapiens infections 1266744 Talaromyces purpureogenus Homo sapiens infections 441959 Talaromyces stipitatus Homo sapiens infections 45464 Teladorsagia circumcincta Capra hircus; Homo sapiens; ovis aries; rangifer tarandus infections 317882 Ternidens deminutus cercopithecus mona; Homo sapiens; macaca fascicularis; papio anubis infections 682077 Tetraploa aristata Homo sapiens infections 353154 Theileria annulata Ticks; cattle infections 5872 Theileria equi Ticks; horses infections 869250 Theileria orientalis strain Shintoku Ticks; cattle infections 333668 Theileria parva Rhipicephalus appendiculatus; cattle infections 103826 Thelazia californiensis mammals; birds; Homo sapiens infections 103827 Thelazia callipaeda Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens infections 5088 Thermoascus crustaceus Homo sapiens infections 28565 Thermomyces dupontii Homo sapiens infections 5541 Thermomyces lanuginosus Homo sapiens infections 35720 Thielavia terrestris Homo sapiens infections 4890 Torulopsis magnoliae Homo sapiens infections 59264 Toxascaris leonina canis latrans; Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens; lynx lynx; puma concolor; vulpes vulpes infections 6265 Toxocara canis alopex lagopus; Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens; meriones unguiculatus; vulpes vulpes infections 6266 Toxocara cati Felis catus; Homo sapiens infections 5811 Toxoplasma gondii apodemus sylvaticus; bison bison; Bos taurus; camelus dromedarius; canis latrans; Canis lupus; Canis lupus familiaris; Capra hircus; capreolus capreolus; cervus elaphus; columba livia; equus asinus; Equus caballus; Felis catus; felis silvestris; gallus gallus; Homo sapiens; lama glama; lynx lynx; lynx rufus; mephitis mephitis; Mus musculus; mustela vison; odocoileus virginianus; oryctolagus cuniculus; ovis aries; passer domesticus; phoca vitulina; procyon lotor; puma concolor; rangifer tarandus; Rattus norvegicus; Rattus rattus; Sus scrofa; Sus scrofa domesticus; urocyon cinereoargenteus; ursus americanus; vulpes vulpes infections 72358 Trachipleistophora anthropophthera Homo sapiens infections 72359 Trachipleistophora hominis Homo sapiens infections 1489895 Trematosphaeria grisea Homo sapiens eumycetoma 578456 Tremella mesenterica Homo sapiens infections 45882 Trichinella britovi Canis lupus; Homo sapiens; lynx lynx; nyctereutes procyonoides; panthera pardus; Sus scrofa; vulpes vulpes infections 144512 Trichinella murrelli Homo sapiens infections 6335 Trichinella nativa alopex lagopus; Canis lupus familiaris; Homo sapiens; nyctereutes procyonoides; ursus maritimus; vulpes vulpes infections 6336 Trichinella nelsoni Homo sapiens infections 268474 Trichinella papuae crocodylus porosus; Homo sapiens; Sus scrofa infections 6337 Trichinella pseudospiralis Homo sapiens; procyon lotor; Sus scrofa infections 6334 Trichinella spiralis Canis lupus familiaris; Equus caballus; Felis catus; Homo sapiens; lynx rufus; meles meles; mephitis mephitis; Mus musculus; nyctereutes procyonoides; procyon lotor; Rattus norvegicus; Sus scrofa; Sus scrofa domesticus; ursus americanus; vulpes vulpes infections 144512 Trichinella T5 Homo sapiens infections 100601 Trichobilharzia brevis snails; birds; Homo sapiens infections 100602 Trichobilharzia ocellata Homo sapiens; lymnaea stagnalis infections 596254 Trichobilharzia stagnicolae snails; birds; Homo sapiens infections 5548 Trichoderma longibrachiatum Homo sapiens infections 317029 Trichoderma pseudokoningii Homo sapiens infections 431241 Trichoderma reesei Homo sapiens infections 5547 Trichoderma viride Homo sapiens infections 4890 Trichomaris invadens crab infections 43075 Trichomonas tenax Homo sapiens infections 5722 Trichomonas vaginalis Homo sapiens infections 74035 Trichophyton ajelloi Homo sapiens infections 63419 Trichophyton concentricum Equus caballus; Homo sapiens infections 63418 Trichophyton equinum Equus caballus infections 69892 Trichophyton gallinae Gallus gallus; Homo sapiens infections 81477 Trichophyton gourvilii Homo sapiens infections 63407 Trichophyton interdigitale Canis lupus familiaris; Homo sapiens infections 5551 Trichophyton megninii Bos taurus; Canis lupus familiaris; cervus nippon; Equus caballus; Felis catus; Homo sapiens; oryctolagus cuniculus; phodopus sungorus; Sus scrofa; Sus scrofa domesticus infections 523103 Trichophyton mentagrophytes Homo sapiens infections 5551 Trichophyton raubitschekii Homo sapiens; Sus scrofa infections 5551 Trichophyton rubrum Homo sapiens infections 34386 Trichophyton schoenleinii Homo sapiens infections 63406 Trichophyton simii Homo sapiens infections 69891 Trichophyton soudanense Homo sapiens infections 34387 Trichophyton tonsurans Bos taurus; Canis lupus familiaris; Capra hircus; Equus caballus; Felis catus; Homo sapiens; ovis aries; Sus scrofa infections 63417 Trichophyton verrucosum Homo sapiens infections 34388 Trichophyton violaceum Homo sapiens; phascolarctos cinereus infections 82508 Trichosporon asahii Homo sapiens infections 82511 Trichosporon asteroides Homo sapiens infections 5553 Trichosporon beigelii Homo sapiens infections 82509 Trichosporon coremiiforme Homo sapiens infections 5554 Trichosporon cutaneum Homo sapiens infections 129132 Trichosporon dermatis Homo sapiens; phascolarctos cinereus infections 82510 Trichosporon faecale Homo sapiens infections 82517 Trichosporon inkin Homo sapiens; membranipora membranacea infections 82522 Trichosporon mucoides Homo sapiens infections 82524 Trichosporon ovoides Homo sapiens infections 6318 Trichostrongylus affinis herbovores; Homo sapiens trichostrongylidiosis 40349 Trichostrongylus axei antilocapra americana; bison bison; Bos taurus; Capra hircus; cervus elaphus; Equus caballus; Homo sapiens; odocoileus hemionus; odocoileus virginianus; ovis aries; ovis canadensis trichostrongylidiosis 6318 Trichostrongylus brevis herbovores; Homo sapiens trichostrongylidiosis 6318 Trichostrongylus calcaratus herbovores; Homo sapiens trichostrongylidiosis 126400 Trichostrongylus capricola herbovores; Homo sapiens trichostrongylidiosis 6319 Trichostrongylus colubriformis Bos taurus; Capra hircus; Homo sapiens; meriones unguiculatus; ovis aries trichostrongylidiosis 6318 Trichostrongylus instabilis herbovores; Homo sapiens trichostrongylidiosis 6318 Trichostrongylus lerouxi herbovores; Homo sapiens trichostrongylidiosis 6318 Trichostrongylus orientalis herbovores; Homo sapiens trichostrongylidiosis 53330 Trichostrongylus probolurus herbovores; Homo sapiens trichostrongylidiosis 6318 Trichostrongylus skrjabini herbovores; Homo sapiens trichostrongylidiosis 40352 Trichostrongylus vitrinus herbovores; Homo sapiens trichostrongylidiosis 68888 Trichuris suis Homo sapiens; Sus scrofa; Sus scrofa domesticus; Sus scrofa scrofa infections 36087 Trichuris trichiura Canis lupus; Canis lupus familiaris; colobus guereza; Homo sapiens; macaca fuscata; nomascus gabriellae; papio ursinus infections 219738 Trichuris vulpis Canis lupus; Canis lupus familiaris; Homo sapiens; vulpes vulpes infections 661394 Tritirachium oryzae Homo sapiens infections 1144522 Tritrichomonas foetus Bos taurus; Felis catus; Homo sapiens; Sus scrofa; Sus scrofa domesticus infections 1660027 Tropicoporus tropicalis Homo sapiens infections 5691 Trypanosoma brucei bos indicus; Bos taurus; Canis lupus familiaris; Capra hircus; cercopithecus aethiops; Equus caballus; Felis catus; glossina morsitans; glossina pallidipes; glossina palpalis; Homo sapiens; Mus musculus; ovis aries; panthera leo; Sus scrofa; Sus scrofa domesticus sleeping sickness 31285 Trypanosoma brucei gambiense bos indicus; Bos taurus; Canis lupus familiaris; Capra hircus; cercopithecus aethiops; Equus caballus; Felis catus; glossina morsitans; glossina pallidipes; glossina palpalis; Homo sapiens; Mus musculus; ovis aries; panthera leo; Sus scrofa; Sus scrofa domesticus sleeping sickness 31286 Trypanosoma brucei rhodesiense bos indicus; Bos taurus; Canis lupus familiaris; Capra hircus; cercopithecus aethiops; Equus caballus; Felis catus; glossina morsitans; glossina pallidipes; glossina palpalis; Homo sapiens; Mus musculus; ovis aries; panthera leo; Sus scrofa; Sus scrofa domesticus sleeping sickness 1068625 Trypanosoma congolense IL3000 animals; Homo sapiens infections 5693 Trypanosoma cruzi artibeus planirostris; Canis lupus; Canis lupus familiaris; Capra hircus; carollia perspicillata; cebus albifrons; cebus apella; chrotopterus auritus; dasyprocta fuliginosa; dasyprocta leporina; dasypus novemcinctus; didelphis albiventris; didelphis aurita; didelphis marsupialis; euphractus sexcinctus; euryoryzomys macconnelli; Felis catus; gallus gallus; holochilus brasiliensis; Homo sapiens; hylaeamys megacephalus; lophostoma silvicola; macaca mulatta; mepraia spinolai; mesocricetus auratus; monodelphis brevicaudata; Mus musculus; myotis albescens; myotis levis; myotis nigricans; myotis ruber; nasua nasua; noctilio albiventris; octodon degus; oryctolagus cuniculus; panstrongylus geniculatus; panstrongylus megistus; philander frenatus; philander opossum; phyllostomus discolor; phyllostomus hastatus; procyon lotor; proechimys longicaudatus; Rattus rattus; rhodnius brethesi; rhodnius colombiensis; rhodnius neglectus; rhodnius pallescens; rhodnius pictipes; rhodnius prolixus; rhodnius robustus; rhodnius stali; saguinus bicolor; saguinus fuscicollis; saguinus labiatus; saguinus midas; saimiri sciureus; saimiri ustus; Sus scrofa; Sus scrofa domesticus; thyroptera tricolor; tonatia bidens; triatoma dimidiata; triatoma infestans; triatoma nitida; triatoma protracta; triatoma rubrovaria; triatoma sanguisuga; trinomys iheringi infections 5697 Trypanosoma evansi animals; Homo sapiens infections 71804 Trypanosoma grayi African crocodiles infections 5698 Trypanosoma rangeli artibeus planirostris; Homo sapiens; panstrongylus megistus; phyllomys dasythrix; platyrrhinus lineatus; rhodnius pallescens; rhodnius pictipes; rhodnius prolixus; rhodnius robustus; saguinus bicolor; saimiri sciureus; tamandua tetradactyla infections 1055687 Trypanosoma vivax Y486 animals; Homo sapiens infections 29877 Tubercularia vulgaris plants cankers 19957 Ulocladium chartarum Homo sapiens infections 125367 Uncinaria stenocephala Canis lupus; Canis lupus familiaris; Felis catus; Homo sapiens; urocyon littoralis; vulpes lagopus; vulpes vulpes infections 1776184 Uroproctepisthmium fish; Homo sapiens infections 237631 Ustilado maydis corn corn smut 948595 Vavraia culicis Homo sapiens infections 364773 Veronaea botryosa heterodera glycines; Homo sapiens phaeohyphomycosis 253628 Verruconis gallopava Homo sapiens infections 93594 Verticillium leptobactrum plants; Homo sapiens infections 796325 Verticillium nigrescens plants; Homo sapiens infections 42399 Vittaforma corneae Homo sapiens infections 145966 Volutella cinerescens Homo sapiens infections 5970 Wangiella dermatitidis anopheles stephensi; chrysoperla sillemi; chrysoperla zastrowi; Homo sapiens; trichogramma chilonis infections 758770 Watsonius watsoni animals; Homo sapiens amphistomiasis 4927 Wickerhamomyces anomalus Homo sapiens infections 6293 Wuchereria bancrofti Homo sapiens; meriones unguiculatus infections 6292 Wuchereria lewisi mosquito; Homo sapiens infections 1036759 Xenoacremonium recifei Homo sapiens infections 4952 Yarrowia lipolytica Homo sapiens infections 909331 Human papillomavirus type 132 Homo sapiens Human papillomavirus (HPV) infection 1316040 Human papillomavirus 132-like viruses Homo sapiens Human papillomavirus (HPV) infection