/users/252891/scratch/edge/database/bacillus/results/Banthracis_Ames_norepeats.fna /users/252891/scratch/edge/database/bacillus/results/Banthracis_Ames_Ancestor_norepeats.fna
NUCMER

[S1]	[E1]	[S2]	[E2]	[LEN 1]	[LEN 2]	[% IDY]	[LEN R]	[LEN Q]	[COV R]	[COV Q]	[TAGS]
1	499357	1	499358	499357	499358	99.99	499357	499358	100.00	100.00	Banthracis_Ames_1183423_1682779	Banthracis_Ames_Ancestor_1183545_1682902
1	7417	1	7417	7417	7417	100.00	7417	7417	100.00	100.00	Banthracis_Ames_14354_21770	Banthracis_Ames_Ancestor_14354_21770
1	99	1	99	99	99	100.00	99	99	100.00	100.00	Banthracis_Ames_150395_150493	Banthracis_Ames_Ancestor_150395_150493
1	94029	1	94029	94029	94029	100.00	94029	94029	100.00	100.00	Banthracis_Ames_150976_245004	Banthracis_Ames_Ancestor_150976_245004
1	369668	1	369669	369668	369669	99.99	369668	369669	100.00	100.00	Banthracis_Ames_1684258_2053925	Banthracis_Ames_Ancestor_1684381_2054049
1	9162	1	9162	9162	9162	100.00	9162	9162	100.00	100.00	Banthracis_Ames_1_9162	Banthracis_Ames_Ancestor_1_9162
1	5304	1	5304	5304	5304	100.00	5304	5304	100.00	100.00	Banthracis_Ames_2054239_2059542	Banthracis_Ames_Ancestor_2054363_2059666
1	669204	1	669208	669204	669208	99.99	669204	669208	100.00	100.00	Banthracis_Ames_2059856_2729059	Banthracis_Ames_Ancestor_2059980_2729187
1	7106	1	7106	7106	7106	100.00	7106	7106	100.00	100.00	Banthracis_Ames_21861_28966	Banthracis_Ames_Ancestor_21861_28966
1	183	1	183	183	183	100.00	183	183	100.00	100.00	Banthracis_Ames_245084_245266	Banthracis_Ames_Ancestor_245084_245266
1	81	1	81	81	81	97.53	81	81	100.00	100.00	Banthracis_Ames_245467_245547	Banthracis_Ames_Ancestor_245467_245547
1	432	1	432	432	432	100.00	432	432	100.00	100.00	Banthracis_Ames_245704_246135	Banthracis_Ames_Ancestor_245704_246135
1	15389	1	15389	15389	15389	100.00	15389	15389	100.00	100.00	Banthracis_Ames_251170_266558	Banthracis_Ames_Ancestor_251170_266558
1	8256	1	8256	8256	8256	100.00	8256	8256	100.00	100.00	Banthracis_Ames_271606_279861	Banthracis_Ames_Ancestor_271606_279861
1	145394	1	145394	145394	145394	99.99	145394	145394	100.00	100.00	Banthracis_Ames_2736277_2881670	Banthracis_Ames_Ancestor_2736405_2881798
1	4919	1	4919	4919	4919	100.00	4919	4919	100.00	100.00	Banthracis_Ames_284913_289831	Banthracis_Ames_Ancestor_284913_289831
1	85622	1	85622	85622	85622	100.00	85622	85622	100.00	100.00	Banthracis_Ames_2883149_2968770	Banthracis_Ames_Ancestor_2883277_2968898
1	237351	1	237351	237351	237351	100.00	237351	237351	100.00	100.00	Banthracis_Ames_294883_532233	Banthracis_Ames_Ancestor_294883_532233
1	774026	1	774025	774026	774025	99.99	774026	774025	100.00	100.00	Banthracis_Ames_2968910_3742935	Banthracis_Ames_Ancestor_2969038_3743062
1	30269	1	30269	30269	30269	100.00	30358	30269	99.71	100.00	Banthracis_Ames_34156_64513	Banthracis_Ames_Ancestor_34156_64424
1	490630	1	490630	490630	490630	99.99	490630	490630	100.00	100.00	Banthracis_Ames_3743336_4233965	Banthracis_Ames_Ancestor_3743463_4234092
1	112	1	112	112	112	100.00	112	112	100.00	100.00	Banthracis_Ames_4234049_4234160	Banthracis_Ames_Ancestor_4234176_4234287
1	53337	1	53337	53337	53337	100.00	53337	53337	100.00	100.00	Banthracis_Ames_4234244_4287580	Banthracis_Ames_Ancestor_4234371_4287707
1	198732	1	198732	198732	198732	100.00	198732	198732	100.00	100.00	Banthracis_Ames_4287653_4486384	Banthracis_Ames_Ancestor_4287780_4486511
1	160636	1	160636	160636	160636	100.00	160636	160636	100.00	100.00	Banthracis_Ames_4489292_4649927	Banthracis_Ames_Ancestor_4489419_4650054
1	106	1	106	106	106	100.00	106	106	100.00	100.00	Banthracis_Ames_4650010_4650115	Banthracis_Ames_Ancestor_4650137_4650242
1	91	1	91	91	91	100.00	91	91	100.00	100.00	Banthracis_Ames_4650276_4650366	Banthracis_Ames_Ancestor_4650403_4650493
1	185	1	185	185	185	100.00	185	185	100.00	100.00	Banthracis_Ames_4650445_4650629	Banthracis_Ames_Ancestor_4650572_4650756
1	108	1	108	108	108	100.00	108	108	100.00	100.00	Banthracis_Ames_4650707_4650814	Banthracis_Ames_Ancestor_4650834_4650941
1	104	1	104	104	104	100.00	192	104	54.17	100.00	Banthracis_Ames_4650905_4651096	Banthracis_Ames_Ancestor_4651032_4651135
1	86	1	86	86	86	100.00	86	86	100.00	100.00	Banthracis_Ames_4651742_4651827	Banthracis_Ames_Ancestor_4651868_4651953
1	184763	1	184763	184763	184763	100.00	184763	184763	100.00	100.00	Banthracis_Ames_4656949_4841711	Banthracis_Ames_Ancestor_4657075_4841837
1	16567	1	16567	16567	16567	100.00	16567	16567	100.00	100.00	Banthracis_Ames_4841817_4858383	Banthracis_Ames_Ancestor_4841943_4858509
1	60989	1	60989	60989	60989	100.00	60989	60989	100.00	100.00	Banthracis_Ames_4858489_4919477	Banthracis_Ames_Ancestor_4858615_4919603
1	75513	1	75513	75513	75513	100.00	75513	75513	100.00	100.00	Banthracis_Ames_4920646_4996158	Banthracis_Ames_Ancestor_4920772_4996284
1	24919	1	24919	24919	24919	100.00	24919	24919	100.00	100.00	Banthracis_Ames_4997328_5022246	Banthracis_Ames_Ancestor_4997454_5022372
1	66008	1	66008	66008	66008	100.00	66008	66008	100.00	100.00	Banthracis_Ames_5022386_5088393	Banthracis_Ames_Ancestor_5022512_5088519
1	114711	1	114711	114711	114711	100.00	114711	114711	100.00	100.00	Banthracis_Ames_5092075_5206785	Banthracis_Ames_Ancestor_5092201_5206911
1	102	1	102	102	102	100.00	102	102	100.00	100.00	Banthracis_Ames_5206865_5206966	Banthracis_Ames_Ancestor_5206991_5207092
1	20247	1	20247	20247	20247	100.00	20247	20247	100.00	100.00	Banthracis_Ames_5207047_5227294	Banthracis_Ames_Ancestor_5207173_5227420
1	109	1	109	109	109	100.00	109	109	100.00	100.00	Banthracis_Ames_537348_537456	Banthracis_Ames_Ancestor_537348_537456
1	181	1	181	181	181	100.00	181	181	100.00	100.00	Banthracis_Ames_537802_537982	Banthracis_Ames_Ancestor_537802_537982
1	96	1	96	96	96	100.00	96	96	100.00	100.00	Banthracis_Ames_538069_538164	Banthracis_Ames_Ancestor_538069_538164
1	4612	1	4612	4612	4612	100.00	4612	4612	100.00	100.00	Banthracis_Ames_538460_543071	Banthracis_Ames_Ancestor_538460_543071
1	11649	1	11649	11649	11649	100.00	11649	11649	100.00	100.00	Banthracis_Ames_543144_554792	Banthracis_Ames_Ancestor_543144_554792
1	176255	1	176256	176255	176256	99.99	176255	176256	100.00	100.00	Banthracis_Ames_565086_741340	Banthracis_Ames_Ancestor_565086_741341
1	17681	1	17681	17681	17681	100.00	17681	17681	100.00	100.00	Banthracis_Ames_64594_82274	Banthracis_Ames_Ancestor_64594_82274
1	265	1	265	265	265	100.00	265	265	100.00	100.00	Banthracis_Ames_747182_747446	Banthracis_Ames_Ancestor_747183_747447
1	250	1	250	250	250	100.00	250	250	100.00	100.00	Banthracis_Ames_747614_747863	Banthracis_Ames_Ancestor_747615_747864
1	132190	1	132190	132190	132190	100.00	132190	132190	100.00	100.00	Banthracis_Ames_748105_880294	Banthracis_Ames_Ancestor_748106_880295
1	58042	1	58042	58042	58042	100.00	58042	58042	100.00	100.00	Banthracis_Ames_87250_145291	Banthracis_Ames_Ancestor_87250_145291
1	260747	1	260746	260747	260746	99.99	282393	282514	92.33	92.29	Banthracis_Ames_890495_1172887	Banthracis_Ames_Ancestor_890496_1173009
260733	282393	260854	282514	21661	21661	100.00	282393	282514	7.67	7.67	Banthracis_Ames_890495_1172887	Banthracis_Ames_Ancestor_890496_1173009