/users/252891/scratch/edge/database/bacillus/results/Banthracis_Ames_norepeats.fna /users/252891/scratch/edge/database/bacillus/results/Banthracis_H9401_norepeats.fna
NUCMER

[S1]	[E1]	[S2]	[E2]	[LEN 1]	[LEN 2]	[% IDY]	[LEN R]	[LEN Q]	[COV R]	[COV Q]	[TAGS]
1	307569	31750	339248	307569	307499	99.95	499357	531028	61.59	57.91	Banthracis_Ames_1183423_1682779	Banthracis_H9401_1142528_1673555
297575	499357	329254	531028	201783	201775	99.97	499357	531028	40.41	38.00	Banthracis_Ames_1183423_1682779	Banthracis_H9401_1142528_1673555
1	7417	1	7417	7417	7417	99.96	7417	7417	100.00	100.00	Banthracis_Ames_14354_21770	Banthracis_H9401_14354_21770
1	99	1	99	99	99	100.00	99	99	100.00	100.00	Banthracis_Ames_150395_150493	Banthracis_H9401_150395_150493
1	75538	1	75546	75538	75546	99.91	94029	94494	80.33	79.95	Banthracis_Ames_150976_245004	Banthracis_H9401_150976_245469
75280	94029	75745	94494	18750	18750	99.96	94029	94494	19.94	19.84	Banthracis_Ames_150976_245004	Banthracis_H9401_150976_245469
1	165902	1	165894	165902	165894	99.98	369668	369211	44.88	44.93	Banthracis_Ames_1684258_2053925	Banthracis_H9401_1675034_2044244
165968	330493	165614	330123	164526	164510	99.97	369668	369211	44.51	44.56	Banthracis_Ames_1684258_2053925	Banthracis_H9401_1675034_2044244
330521	344910	330022	344411	14390	14390	99.99	369668	369211	3.89	3.90	Banthracis_Ames_1684258_2053925	Banthracis_H9401_1675034_2044244
344857	369668	344400	369211	24812	24812	99.97	369668	369211	6.71	6.72	Banthracis_Ames_1684258_2053925	Banthracis_H9401_1675034_2044244
1	9162	1	9162	9162	9162	100.00	9162	9162	100.00	100.00	Banthracis_Ames_1_9162	Banthracis_H9401_1_9162
1	5304	1	5304	5304	5304	100.00	5304	5304	100.00	100.00	Banthracis_Ames_2054239_2059542	Banthracis_H9401_2044558_2049861
1	119977	1	119968	119977	119968	99.98	669204	669534	17.93	17.92	Banthracis_Ames_2059856_2729059	Banthracis_H9401_2050175_2719708
119802	220982	119865	221060	101181	101196	99.96	669204	669534	15.12	15.11	Banthracis_Ames_2059856_2729059	Banthracis_H9401_2050175_2719708
221115	474123	221094	474094	253009	253001	99.98	669204	669534	37.81	37.79	Banthracis_Ames_2059856_2729059	Banthracis_H9401_2050175_2719708
474118	660116	474496	660512	185999	186017	99.97	669204	669534	27.79	27.78	Banthracis_Ames_2059856_2729059	Banthracis_H9401_2050175_2719708
660159	669204	660490	669534	9046	9045	99.97	669204	669534	1.35	1.35	Banthracis_Ames_2059856_2729059	Banthracis_H9401_2050175_2719708
1	7106	1	7106	7106	7106	99.99	7106	7106	100.00	100.00	Banthracis_Ames_21861_28966	Banthracis_H9401_21861_28966
1	183	1	183	183	183	100.00	183	183	100.00	100.00	Banthracis_Ames_245084_245266	Banthracis_H9401_245549_245731
1	81	1	81	81	81	97.53	81	81	100.00	100.00	Banthracis_Ames_245467_245547	Banthracis_H9401_245932_246012
1	432	1	431	432	431	99.77	432	431	100.00	100.00	Banthracis_Ames_245704_246135	Banthracis_H9401_246169_246599
1	15389	1	15389	15389	15389	99.99	15389	15403	100.00	99.91	Banthracis_Ames_251170_266558	Banthracis_H9401_251634_267036
1	8256	1	8257	8256	8257	99.99	8256	8267	100.00	99.88	Banthracis_Ames_271606_279861	Banthracis_H9401_272070_280336
1	92909	1	92913	92909	92913	99.98	145394	145358	63.90	63.92	Banthracis_Ames_2736277_2881670	Banthracis_H9401_2726926_2872283
92882	145394	92845	145358	52513	52514	99.98	145394	145358	36.12	36.13	Banthracis_Ames_2736277_2881670	Banthracis_H9401_2726926_2872283
1	85622	1	85618	85622	85618	99.99	85622	85618	100.00	100.00	Banthracis_Ames_2883149_2968770	Banthracis_H9401_2873762_2959379
1	107660	2	107659	107660	107658	99.99	237351	237869	45.36	45.26	Banthracis_Ames_294883_532233	Banthracis_H9401_285374_523242
107650	187242	107745	187402	79593	79658	99.86	237351	237869	33.53	33.49	Banthracis_Ames_294883_532233	Banthracis_H9401_285374_523242
187232	237351	187750	237869	50120	50120	99.99	237351	237869	21.12	21.07	Banthracis_Ames_294883_532233	Banthracis_H9401_285374_523242
1	215060	1	215017	215060	215017	99.96	774026	1254414	27.78	17.14	Banthracis_Ames_2968910_3742935	Banthracis_H9401_2959519_4213932
215104	546553	215009	546459	331450	331451	99.97	774026	1254414	42.82	26.42	Banthracis_Ames_2968910_3742935	Banthracis_H9401_2959519_4213932
546587	774026	546421	773857	227440	227437	99.98	774026	1254414	29.38	18.13	Banthracis_Ames_2968910_3742935	Banthracis_H9401_2959519_4213932
1	30269	1	30269	30269	30269	99.99	30358	30269	99.71	100.00	Banthracis_Ames_34156_64513	Banthracis_H9401_34156_64424
1	121669	774062	895760	121669	121699	99.96	490630	1254414	24.80	9.70	Banthracis_Ames_3743336_4233965	Banthracis_H9401_2959519_4213932
101709	480326	875779	1254414	378618	378636	99.98	490630	1254414	77.17	30.18	Banthracis_Ames_3743336_4233965	Banthracis_H9401_2959519_4213932
1	53337	1	53323	53337	53323	99.97	53337	53323	100.00	100.00	Banthracis_Ames_4234244_4287580	Banthracis_H9401_4224516_4277838
1	15908	1	15909	15908	15909	99.99	198732	199974	8.00	7.96	Banthracis_Ames_4287653_4486384	Banthracis_H9401_4277911_4477884
15870	45086	15929	45147	29217	29219	99.93	198732	199974	14.70	14.61	Banthracis_Ames_4287653_4486384	Banthracis_H9401_4277911_4477884
44909	74470	45159	74736	29562	29578	99.93	198732	199974	14.88	14.79	Banthracis_Ames_4287653_4486384	Banthracis_H9401_4277911_4477884
54456	198732	54707	198997	144277	144291	99.98	198732	199974	72.60	72.15	Banthracis_Ames_4287653_4486384	Banthracis_H9401_4277911_4477884
1	29389	1	29390	29389	29390	99.93	160636	161443	18.30	18.20	Banthracis_Ames_4489292_4649927	Banthracis_H9401_4479851_4641293
29439	33271	30322	34154	3833	3833	99.92	160636	161443	2.39	2.37	Banthracis_Ames_4489292_4649927	Banthracis_H9401_4479851_4641293
33033	160636	33838	161443	127604	127606	99.96	160636	161443	79.44	79.04	Banthracis_Ames_4489292_4649927	Banthracis_H9401_4479851_4641293
1	106	1	106	106	106	100.00	106	106	100.00	100.00	Banthracis_Ames_4650010_4650115	Banthracis_H9401_4641376_4641481
1	91	1	91	91	91	100.00	91	91	100.00	100.00	Banthracis_Ames_4650276_4650366	Banthracis_H9401_4641642_4641732
1	185	1	185	185	185	100.00	185	185	100.00	100.00	Banthracis_Ames_4650445_4650629	Banthracis_H9401_4641811_4641995
1	108	1	108	108	108	100.00	108	108	100.00	100.00	Banthracis_Ames_4650707_4650814	Banthracis_H9401_4642073_4642180
1	104	1	104	104	104	100.00	192	104	54.17	100.00	Banthracis_Ames_4650905_4651096	Banthracis_H9401_4642271_4642374
1	86	1	86	86	86	98.84	86	87	100.00	98.85	Banthracis_Ames_4651742_4651827	Banthracis_H9401_4643107_4643193
1	34585	1	34593	34585	34593	99.97	184763	184844	18.72	18.71	Banthracis_Ames_4656949_4841711	Banthracis_H9401_4648314_4833157
34578	58115	34697	58235	23538	23539	99.97	184763	184844	12.74	12.73	Banthracis_Ames_4656949_4841711	Banthracis_H9401_4648314_4833157
58088	184763	58168	184844	126676	126677	99.99	184763	184844	68.56	68.53	Banthracis_Ames_4656949_4841711	Banthracis_H9401_4648314_4833157
1	16567	1	16564	16567	16564	99.98	16567	16564	100.00	100.00	Banthracis_Ames_4841817_4858383	Banthracis_H9401_4833263_4849826
1	60989	1	60986	60989	60986	99.98	60989	60986	100.00	100.00	Banthracis_Ames_4858489_4919477	Banthracis_H9401_4849932_4910917
1	45216	1	45233	45216	45233	99.94	75513	75636	59.88	59.80	Banthracis_Ames_4920646_4996158	Banthracis_H9401_4912086_4987721
45216	75513	45340	75636	30298	30297	99.99	75513	75636	40.12	40.06	Banthracis_Ames_4920646_4996158	Banthracis_H9401_4912086_4987721
1	24919	1	24917	24919	24917	99.97	24919	24917	100.00	100.00	Banthracis_Ames_4997328_5022246	Banthracis_H9401_4988891_5013807
1	9241	1	9246	9241	9246	99.83	66008	66110	14.00	13.99	Banthracis_Ames_5022386_5088393	Banthracis_H9401_5013947_5080056
9087	66008	9189	66110	56922	56922	99.98	66008	66110	86.24	86.10	Banthracis_Ames_5022386_5088393	Banthracis_H9401_5013947_5080056
1	114711	1	114666	114711	114666	99.95	114711	114666	100.00	100.00	Banthracis_Ames_5092075_5206785	Banthracis_H9401_5083776_5198441
1	102	1	102	102	102	100.00	102	102	100.00	100.00	Banthracis_Ames_5206865_5206966	Banthracis_H9401_5198521_5198622
1	20247	1	20245	20247	20245	99.99	20247	20245	100.00	100.00	Banthracis_Ames_5207047_5227294	Banthracis_H9401_5198703_5218948
1	109	1	109	109	109	100.00	109	109	100.00	100.00	Banthracis_Ames_537348_537456	Banthracis_H9401_528365_528473
1	181	1	181	181	181	100.00	181	181	100.00	100.00	Banthracis_Ames_537802_537982	Banthracis_H9401_528819_528999
1	96	1	96	96	96	100.00	96	96	100.00	100.00	Banthracis_Ames_538069_538164	Banthracis_H9401_529086_529181
1	4612	1	4612	4612	4612	100.00	4612	4612	100.00	100.00	Banthracis_Ames_538460_543071	Banthracis_H9401_529477_534088
1	11649	1	11649	11649	11649	99.98	11649	11649	100.00	100.00	Banthracis_Ames_543144_554792	Banthracis_H9401_534161_545809
1	176255	1	176285	176255	176285	99.97	176255	176285	100.00	100.00	Banthracis_Ames_565086_741340	Banthracis_H9401_556103_732387
1	17681	1	17681	17681	17681	99.99	17681	17681	100.00	100.00	Banthracis_Ames_64594_82274	Banthracis_H9401_64594_82274
1	265	1	265	265	265	100.00	265	265	100.00	100.00	Banthracis_Ames_747182_747446	Banthracis_H9401_738321_738585
1	250	1	250	250	250	100.00	250	250	100.00	100.00	Banthracis_Ames_747614_747863	Banthracis_H9401_738753_739002
1	132190	1	132185	132190	132185	99.98	132190	132185	100.00	100.00	Banthracis_Ames_748105_880294	Banthracis_H9401_739244_871428
1	58042	1	58042	58042	58042	99.99	58042	58042	100.00	100.00	Banthracis_Ames_87250_145291	Banthracis_H9401_87250_145291
1	76625	1	76624	76625	76624	99.99	282393	202180	27.13	37.90	Banthracis_Ames_890495_1172887	Banthracis_H9401_881566_1083745
76697	202267	76615	202180	125571	125566	99.98	282393	202180	44.47	62.11	Banthracis_Ames_890495_1172887	Banthracis_H9401_881566_1083745
202376	256331	1	53954	53956	53954	99.97	282393	58253	19.11	92.62	Banthracis_Ames_890495_1172887	Banthracis_H9401_1084014_1142266
256408	260747	53874	58214	4340	4341	99.93	282393	58253	1.54	7.45	Banthracis_Ames_890495_1172887	Banthracis_H9401_1084014_1142266
260804	282393	1	21591	21590	21591	99.99	282393	531028	7.65	4.07	Banthracis_Ames_890495_1172887	Banthracis_H9401_1142528_1673555