/users/218819/scratch/projects/HantaVirus/PhaME/results/Hantaan_virus_HV004_norepeats.fna /users/218819/scratch/projects/HantaVirus/PhaME/results/Hantaan_virus_Galkino_AA57_2002_norepeats.fna
NUCMER

[S1]	[E1]	[S2]	[E2]	[LEN 1]	[LEN 2]	[% IDY]	[LEN R]	[LEN Q]	[COV R]	[COV Q]	[TAGS]
16	6513	1	6498	6498	6498	83.83	11847	11738	54.85	55.36	Hantaan_virus_HV004_1_11847	Hantaan_virus_Galkino_AA57_2002_1_11738
10012	11829	9957	11738	1818	1782	85.98	11847	11738	15.35	15.18	Hantaan_virus_HV004_1_11847	Hantaan_virus_Galkino_AA57_2002_1_11738