/users/218819/scratch/projects/HantaVirus/PhaME/results/Hantaan_virus_JS12_norepeats.fna /users/218819/scratch/projects/HantaVirus/PhaME/results/Hantaan_virus_HV004_norepeats.fna
NUCMER

[S1]	[E1]	[S2]	[E2]	[LEN 1]	[LEN 2]	[% IDY]	[LEN R]	[LEN Q]	[COV R]	[COV Q]	[TAGS]
22	11840	22	11847	11819	11826	84.31	11843	11847	99.80	99.82	Hantaan_virus_JS12_1_11843	Hantaan_virus_HV004_1_11847