/users/218819/scratch/projects/HantaVirus/PhaME/results/Hantaan_virus_cl_1_norepeats.fna /users/218819/scratch/projects/HantaVirus/PhaME/results/Hantaan_virus_JS12_norepeats.fna
NUCMER

[S1]	[E1]	[S2]	[E2]	[LEN 1]	[LEN 2]	[% IDY]	[LEN R]	[LEN Q]	[COV R]	[COV Q]	[TAGS]
1	11845	1	11840	11845	11840	99.72	11845	11843	100.00	99.97	Hantaan_virus_cl_1_1_11845	Hantaan_virus_JS12_1_11843