/users/252891/scratch/edge/database/yersinia/results/Ypestis_CO92_norepeats.fna /users/252891/scratch/edge/database/yersinia/results/Ypestis_KIM_10_norepeats.fna NUCMER [S1] [E1] [S2] [E2] [LEN 1] [LEN 2] [% IDY] [LEN R] [LEN Q] [COV R] [COV Q] [TAGS] 1 6451 1 6451 6451 6451 100.00 6451 6451 100.00 100.00 Ypestis_CO92_1003117_1009567 Ypestis_KIM_10_3633125_3639575 1 3744 1 3744 3744 3744 100.00 3766 3744 99.42 100.00 Ypestis_CO92_1009744_1013509 Ypestis_KIM_10_3639752_3643495 1 3431 1 3452 3431 3452 99.36 3431 3452 100.00 100.00 Ypestis_CO92_1016182_1019612 Ypestis_KIM_10_3644230_3647681 1 44122 1 44131 44122 44131 99.98 44122 44131 100.00 100.00 Ypestis_CO92_1019783_1063904 Ypestis_KIM_10_3647852_3691982 1 1493 1 1507 1493 1507 99.00 1493 21010 100.00 7.17 Ypestis_CO92_104085_105577 Ypestis_KIM_10_305690_326699 1 618 1 618 618 618 100.00 618 618 100.00 100.00 Ypestis_CO92_1064006_1064623 Ypestis_KIM_10_3692084_3692701 1 723 1 723 723 723 100.00 723 723 100.00 100.00 Ypestis_CO92_1065232_1065954 Ypestis_KIM_10_3693310_3694032 1 1622 1 1622 1622 1622 100.00 1622 1622 100.00 100.00 Ypestis_CO92_1066587_1068208 Ypestis_KIM_10_3694665_3696286 1 615 1 615 615 615 100.00 615 615 100.00 100.00 Ypestis_CO92_1070335_1070949 Ypestis_KIM_10_3698413_3699027 1 8391 1 8420 8391 8420 99.66 8391 8420 100.00 100.00 Ypestis_CO92_1071581_1079971 Ypestis_KIM_10_3699659_3708078 1 19541 1506 21010 19541 19505 99.82 19541 21010 100.00 92.84 Ypestis_CO92_107536_127076 Ypestis_KIM_10_305690_326699 1 20607 1 20602 20607 20602 99.97 20607 20602 100.00 100.00 Ypestis_CO92_1086850_1107456 Ypestis_KIM_10_3714957_3735558 40 20092 28 20064 20053 20037 99.92 36984 36957 54.22 54.22 Ypestis_CO92_1108940_1145923 Ypestis_KIM_10_3737042_3773998 92 36984 80 36957 36893 36878 99.95 36984 36957 99.75 99.79 Ypestis_CO92_1108940_1145923 Ypestis_KIM_10_3737042_3773998 1 16921 16921 1 16921 16921 99.99 16922 25117 99.99 67.37 Ypestis_CO92_1147889_1164810 Ypestis_KIM_10_3471943_3497059 1 120 120 1 120 120 100.00 121 121 99.17 99.17 Ypestis_CO92_1164890_1165010 Ypestis_KIM_10_3471743_3471863 1 7453 7453 1 7453 7453 100.00 7454 7454 99.99 99.99 Ypestis_CO92_1165091_1172544 Ypestis_KIM_10_3464209_3471662 1 929 929 1 929 929 100.00 4628 930 20.07 99.89 Ypestis_CO92_1172722_1177349 Ypestis_KIM_10_3463102_3464031 936 4627 3692 1 3692 3692 100.00 4628 3692 79.78 100.00 Ypestis_CO92_1172722_1177349 Ypestis_KIM_10_3457445_3461136 1 30029 39101 9088 30029 30014 99.94 39117 39102 76.77 76.76 Ypestis_CO92_1178077_1217193 Ypestis_KIM_10_3417616_3456717 10009 39116 29093 1 29108 29093 99.95 39117 39102 74.41 74.40 Ypestis_CO92_1178077_1217193 Ypestis_KIM_10_3417616_3456717 1 9455 9441 5 9455 9437 99.81 9455 9442 100.00 99.95 Ypestis_CO92_1222819_1232273 Ypestis_KIM_10_3402549_3411990 1 198 198 1 198 198 100.00 199 199 99.50 99.50 Ypestis_CO92_1234244_1234442 Ypestis_KIM_10_3400385_3400583 1 10267 10267 1 10267 10267 99.97 10268 10268 99.99 99.99 Ypestis_CO92_1234525_1244792 Ypestis_KIM_10_3390035_3400302 1 27455 27455 1 27455 27455 99.99 27456 27456 100.00 100.00 Ypestis_CO92_1245590_1273045 Ypestis_KIM_10_3361782_3389237 1 4833 34827 29995 4833 4833 100.00 4833 34828 100.00 13.88 Ypestis_CO92_1273227_1278059 Ypestis_KIM_10_3326773_3361600 1 30005 29983 1 30005 29983 99.84 30006 34828 100.00 86.09 Ypestis_CO92_1280030_1310035 Ypestis_KIM_10_3326773_3361600 1 61407 1 61390 61407 61390 99.87 61407 62112 100.00 98.84 Ypestis_CO92_128641_190047 Ypestis_KIM_10_4351721_4413832 1 13439 61610 48172 13439 13439 100.00 61471 61611 21.86 21.81 Ypestis_CO92_1321848_1383318 Ypestis_KIM_10_3264424_3326034 13405 61470 48080 1 48066 48080 99.97 61471 61611 78.19 78.04 Ypestis_CO92_1321848_1383318 Ypestis_KIM_10_3264424_3326034 1 409 409 1 409 409 100.00 410 410 99.76 99.76 Ypestis_CO92_1384056_1384465 Ypestis_KIM_10_3263277_3263686 1 19278 19313 1 19278 19313 99.81 19279 19314 99.99 99.99 Ypestis_CO92_1384539_1403817 Ypestis_KIM_10_3243890_3263203 1 9768 9768 1 9768 9768 99.99 9769 9769 99.99 99.99 Ypestis_CO92_1403989_1413757 Ypestis_KIM_10_3233950_3243718 1 1476 1476 1 1476 1476 100.00 1477 1477 99.93 99.93 Ypestis_CO92_1413876_1415352 Ypestis_KIM_10_3232355_3233831 56 4177 4121 1 4122 4121 99.98 4178 4121 98.66 100.00 Ypestis_CO92_1415847_1420024 Ypestis_KIM_10_3227684_3231804 1 41553 98934 57406 41553 41529 99.94 81972 98935 50.69 41.98 Ypestis_CO92_1420759_1502730 Ypestis_KIM_10_3128015_3226949 21528 81972 77423 16987 60445 60437 99.99 81972 98935 73.74 61.09 Ypestis_CO92_1420759_1502730 Ypestis_KIM_10_3128015_3226949 1 16975 16975 1 16975 16975 99.99 16976 98935 99.99 17.16 Ypestis_CO92_1504701_1521676 Ypestis_KIM_10_3128015_3226949 1 16001 16001 1 16001 16001 100.00 16002 16002 99.99 99.99 Ypestis_CO92_1521771_1537772 Ypestis_KIM_10_3111919_3127920 1 16283 16275 1 16283 16275 99.95 54538 16276 29.86 99.99 Ypestis_CO92_1538501_1593038 Ypestis_KIM_10_3094915_3111190 16286 54537 38261 1 38252 38261 99.97 54538 38261 70.14 100.00 Ypestis_CO92_1538501_1593038 Ypestis_KIM_10_3054693_3092953 1 3699 3699 1 3699 3699 100.00 3700 3700 99.97 99.97 Ypestis_CO92_1593772_1597471 Ypestis_KIM_10_3050260_3053959 1 9447 21086 11640 9447 9447 100.00 21051 21087 44.88 44.80 Ypestis_CO92_1597647_1618697 Ypestis_KIM_10_3028998_3050084 9413 21050 11638 1 11638 11638 100.00 21051 21087 55.28 55.19 Ypestis_CO92_1597647_1618697 Ypestis_KIM_10_3028998_3050084 1 973 973 1 973 973 100.00 974 974 99.90 99.90 Ypestis_CO92_1619435_1620408 Ypestis_KIM_10_3027287_3028260 1 4054 4054 1 4054 4054 100.00 4055 4057 99.98 99.93 Ypestis_CO92_1622378_1626432 Ypestis_KIM_10_3021263_3025319 1 6687 28847 22161 6687 6687 99.97 28780 28856 23.23 23.17 Ypestis_CO92_1627177_1655956 Ypestis_KIM_10_2991671_3020526 6675 28779 22104 1 22105 22104 99.99 28780 28856 76.81 76.60 Ypestis_CO92_1627177_1655956 Ypestis_KIM_10_2991671_3020526 1 4660 4657 1 4660 4657 99.89 4661 4658 99.98 99.98 Ypestis_CO92_1662841_1667501 Ypestis_KIM_10_2980135_2984792 1 24292 24293 1 24292 24293 99.99 24293 24294 100.00 100.00 Ypestis_CO92_1669628_1693920 Ypestis_KIM_10_2953715_2978008 1 26105 31177 5088 26105 26090 99.94 31193 31178 83.69 83.68 Ypestis_CO92_1695250_1726442 Ypestis_KIM_10_2921208_2952385 6103 31192 25075 1 25090 25075 99.94 31193 31178 80.43 80.43 Ypestis_CO92_1695250_1726442 Ypestis_KIM_10_2921208_2952385 1 37939 37965 1 37939 37965 99.92 37940 37966 100.00 100.00 Ypestis_CO92_1729129_1767068 Ypestis_KIM_10_2882515_2920480 169 347 179 1 179 179 100.00 348 179 51.44 100.00 Ypestis_CO92_17486_17833 Ypestis_KIM_10_4240991_4241169 1 10623 10622 1 10623 10622 99.99 10624 10623 99.99 99.99 Ypestis_CO92_1767156_1777779 Ypestis_KIM_10_2871805_2882427 1 18473 18454 1 18473 18454 99.90 18474 18456 99.99 99.99 Ypestis_CO92_1779098_1797571 Ypestis_KIM_10_2852032_2870487 1 9316 9289 1 9316 9289 99.71 9317 9290 99.99 99.99 Ypestis_CO92_1797676_1806992 Ypestis_KIM_10_2842638_2851927 1 3091 3091 1 3091 3091 99.94 3092 3092 99.97 99.97 Ypestis_CO92_1808313_1811404 Ypestis_KIM_10_1926312_1929403 1 5285 1 5270 5285 5270 99.72 5285 12278 100.00 42.92 Ypestis_CO92_1812731_1818015 Ypestis_KIM_10_1930724_1943001 1 6986 5293 12278 6986 6986 100.00 6986 12278 100.00 56.90 Ypestis_CO92_1818748_1825733 Ypestis_KIM_10_1930724_1943001 6 1145 1 1140 1140 1140 100.00 1145 1140 99.56 100.00 Ypestis_CO92_1826462_1827606 Ypestis_KIM_10_1943735_1944874 1 5354 1 5355 5354 5355 99.98 5354 5355 100.00 100.00 Ypestis_CO92_1827777_1833130 Ypestis_KIM_10_1945045_1950399 1 8565 1 8565 8565 8565 100.00 8565 8565 100.00 100.00 Ypestis_CO92_1833861_1842425 Ypestis_KIM_10_1951130_1959694 1 278 1 278 278 278 100.00 279 58781 99.64 0.47 Ypestis_CO92_1843745_1844023 Ypestis_KIM_10_1961014_2019794 1 41743 279 42036 41743 41758 99.96 58495 58781 71.36 71.04 Ypestis_CO92_1845983_1904477 Ypestis_KIM_10_1961014_2019794 21746 58495 22024 58781 36750 36758 99.92 58495 58781 62.83 62.53 Ypestis_CO92_1845983_1904477 Ypestis_KIM_10_1961014_2019794 1 22264 1 22288 22264 22288 99.76 22265 22288 100.00 100.00 Ypestis_CO92_1906606_1928870 Ypestis_KIM_10_2021923_2044210 1 6820 6831 1 6820 6831 99.84 6822 6832 99.97 99.99 Ypestis_CO92_19154_25975 Ypestis_KIM_10_4232839_4239670 1 716 61397 62112 716 716 100.00 716 62112 100.00 1.15 Ypestis_CO92_192013_192728 Ypestis_KIM_10_4351721_4413832 1 26768 1 26768 26768 26768 99.99 26768 26768 100.00 100.00 Ypestis_CO92_192907_219674 Ypestis_KIM_10_4414011_4440778 1 25949 1 25913 25949 25913 99.84 41281 41245 62.86 62.83 Ypestis_CO92_1930830_1972110 Ypestis_KIM_10_2046171_2087415 5943 41281 5926 41245 35339 35320 99.93 41281 41245 85.61 85.63 Ypestis_CO92_1930830_1972110 Ypestis_KIM_10_2046171_2087415 1 1244 1244 1 1244 1244 100.00 1245 1245 99.92 99.92 Ypestis_CO92_1973434_1974678 Ypestis_KIM_10_2840067_2841311 1 15915 60969 45068 15915 15902 99.86 15915 60970 100.00 26.08 Ypestis_CO92_1976639_1992553 Ypestis_KIM_10_2777137_2838106 1 45052 45063 12 45052 45052 99.98 45052 60970 100.00 73.89 Ypestis_CO92_1994517_2039568 Ypestis_KIM_10_2777137_2838106 1 250 24319 24567 250 249 98.80 11817 24567 2.12 1.01 Ypestis_CO92_1_11817 Ypestis_KIM_10_4576189_4600756 251 11817 1 11567 11567 11567 100.00 11817 11567 97.88 100.00 Ypestis_CO92_1_11817 Ypestis_KIM_10_1_11567 1 11324 11324 1 11324 11324 100.00 11325 11325 99.99 99.99 Ypestis_CO92_2040309_2051633 Ypestis_KIM_10_2765084_2776408 1 40864 40896 1 40864 40896 99.92 40865 40897 100.00 100.00 Ypestis_CO92_2052326_2093190 Ypestis_KIM_10_2723638_2764534 1 21670 21669 1 21670 21669 99.99 21671 21670 100.00 100.00 Ypestis_CO92_2093362_2115032 Ypestis_KIM_10_2701797_2723466 1 12765 20374 7574 12765 12801 99.71 20345 20375 62.74 62.83 Ypestis_CO92_2115110_2135454 Ypestis_KIM_10_2681345_2701719 2772 20344 17567 1 17573 17567 99.97 20345 20375 86.38 86.22 Ypestis_CO92_2115110_2135454 Ypestis_KIM_10_2681345_2701719 1 33871 33871 1 33871 33871 99.99 33872 33872 100.00 100.00 Ypestis_CO92_2137416_2171287 Ypestis_KIM_10_2645512_2679383 1 30028 30028 1 30028 30028 99.99 30029 30029 100.00 100.00 Ypestis_CO92_2171392_2201420 Ypestis_KIM_10_2615379_2645407 1 34671 34663 1 34671 34663 99.97 34672 34664 100.00 100.00 Ypestis_CO92_2201591_2236262 Ypestis_KIM_10_2580545_2615208 1 25297 1 25297 25297 25297 100.00 25302 25297 99.98 100.00 Ypestis_CO92_220424_245725 Ypestis_KIM_10_4441528_4466824 1 19016 18968 1 19016 18968 99.74 19017 18970 99.99 99.99 Ypestis_CO92_2238218_2257234 Ypestis_KIM_10_2559618_2578587 1 34948 34948 1 34948 34948 99.99 34949 34949 100.00 100.00 Ypestis_CO92_2258554_2293502 Ypestis_KIM_10_2523350_2558298 1 439 2542 2104 439 439 99.77 439 2576 100.00 17.04 Ypestis_CO92_2294422_2294860 Ypestis_KIM_10_2520598_2523173 1 2099 2100 1 2099 2100 99.95 2100 2576 99.95 81.52 Ypestis_CO92_2296823_2298922 Ypestis_KIM_10_2520598_2523173 1 4866 4866 1 4866 4866 99.98 4867 4867 99.98 99.98 Ypestis_CO92_2299015_2303881 Ypestis_KIM_10_2515639_2520505 1 2728 2727 1 2728 2727 99.96 2729 2728 99.96 99.96 Ypestis_CO92_2304604_2307332 Ypestis_KIM_10_2512189_2514916 1 1676 1676 1 1676 1676 100.00 23146 1677 7.24 99.94 Ypestis_CO92_2307425_2330570 Ypestis_KIM_10_2510420_2512096 2006 23145 21176 1 21140 21176 99.83 23146 21176 91.33 100.00 Ypestis_CO92_2307425_2330570 Ypestis_KIM_10_2488915_2510090 1 11735 11735 1 11735 11735 100.00 11736 11736 99.99 99.99 Ypestis_CO92_2331034_2342769 Ypestis_KIM_10_2476716_2488451 1 10944 10944 1 10944 10944 99.99 10945 10945 99.99 99.99 Ypestis_CO92_2342939_2353883 Ypestis_KIM_10_2465602_2476546 1 10235 10236 1 10235 10236 99.98 10235 10237 100.00 99.99 Ypestis_CO92_2354001_2364235 Ypestis_KIM_10_2455248_2465484 1 9459 9459 1 9459 9459 100.00 9460 9461 99.99 99.98 Ypestis_CO92_2366197_2375656 Ypestis_KIM_10_2443828_2453288 1 13295 25561 12267 13295 13295 99.99 13295 25562 100.00 52.01 Ypestis_CO92_2376974_2390268 Ypestis_KIM_10_2416949_2442510 1 12247 12247 1 12247 12247 100.00 12248 25562 99.99 47.91 Ypestis_CO92_2390998_2403245 Ypestis_KIM_10_2416949_2442510 1 35753 35739 1 35753 35739 99.95 35754 35740 100.00 100.00 Ypestis_CO92_2404569_2440322 Ypestis_KIM_10_2379886_2415625 1 208 208 1 208 208 100.00 209 209 99.52 99.52 Ypestis_CO92_2440851_2441059 Ypestis_KIM_10_2379149_2379357 1 7818 7829 1 7818 7829 99.85 7818 7830 100.00 99.99 Ypestis_CO92_2442377_2450194 Ypestis_KIM_10_2370002_2377831 1 14148 4 14151 14148 14148 99.99 14148 14151 100.00 99.98 Ypestis_CO92_2452160_2466307 Ypestis_KIM_10_2228392_2242542 1 3692 1 3699 3692 3699 99.81 3692 3699 100.00 100.00 Ypestis_CO92_2466482_2470173 Ypestis_KIM_10_2242717_2246415 1 48969 1 48998 48969 48998 99.92 116867 109058 41.90 44.93 Ypestis_CO92_2471492_2588358 Ypestis_KIM_10_2247734_2356791 48801 82679 48947 82799 33879 33853 99.91 116867 109058 28.99 31.04 Ypestis_CO92_2471492_2588358 Ypestis_KIM_10_2247734_2356791 91391 96684 82769 88062 5294 5294 99.89 116867 109058 4.53 4.85 Ypestis_CO92_2471492_2588358 Ypestis_KIM_10_2247734_2356791 96676 116867 88866 109058 20192 20193 99.96 116867 109058 17.28 18.52 Ypestis_CO92_2471492_2588358 Ypestis_KIM_10_2247734_2356791 1 25895 1 25893 25895 25893 99.98 25895 25893 100.00 100.00 Ypestis_CO92_247683_273577 Ypestis_KIM_10_574516_600408 1 10575 1 10575 10575 10575 99.98 10575 10575 100.00 100.00 Ypestis_CO92_2588531_2599105 Ypestis_KIM_10_2356964_2367538 1 4324 36304 31981 4324 4324 100.00 4420 36307 97.83 11.91 Ypestis_CO92_2599826_2604245 Ypestis_KIM_10_2189910_2226216 727 32666 31982 1 31940 31982 99.87 32667 36307 97.77 88.09 Ypestis_CO92_2604424_2637090 Ypestis_KIM_10_2189910_2226216 1 8417 8418 1 8417 8418 99.99 8418 8419 99.99 99.99 Ypestis_CO92_2637821_2646238 Ypestis_KIM_10_2180761_2189179 1 11056 23412 12357 11056 11056 100.00 11056 23413 100.00 47.22 Ypestis_CO92_2646967_2658022 Ypestis_KIM_10_2156620_2180032 1 7645 12354 4710 7645 7645 100.00 17657 23413 43.30 32.65 Ypestis_CO92_2659984_2677640 Ypestis_KIM_10_2156620_2180032 9372 12677 4715 1410 3306 3306 100.00 17657 23413 18.72 14.12 Ypestis_CO92_2659984_2677640 Ypestis_KIM_10_2156620_2180032 16247 17656 1410 1 1410 1410 100.00 17657 23413 7.99 6.02 Ypestis_CO92_2659984_2677640 Ypestis_KIM_10_2156620_2180032 1 12565 12567 3 12565 12565 100.00 12565 12570 100.00 99.96 Ypestis_CO92_26702_39266 Ypestis_KIM_10_4219544_4232113 1 10960 10960 1 10960 10960 99.99 10961 10961 99.99 99.99 Ypestis_CO92_2677816_2688776 Ypestis_KIM_10_2145484_2156444 1 2564 2564 1 2564 2564 100.00 2565 2565 99.96 99.96 Ypestis_CO92_2688988_2691552 Ypestis_KIM_10_2142708_2145272 1 373 51266 50894 373 373 100.00 373 51267 100.00 0.73 Ypestis_CO92_2692300_2692672 Ypestis_KIM_10_2088734_2140000 1 50888 50888 1 50888 50888 99.99 50889 51267 100.00 99.26 Ypestis_CO92_2694637_2745525 Ypestis_KIM_10_2088734_2140000 1 26642 1 26642 26642 26642 99.99 26642 37269 100.00 71.49 Ypestis_CO92_273751_300392 Ypestis_KIM_10_600582_637850 1 22660 37794 15134 22660 22661 99.99 38065 37795 59.53 59.96 Ypestis_CO92_2746842_2784906 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